Maybe I'm overlooking something, but to me it looks like they're doing the reduction to a polynomial-time problem already at the very beginning of the paper (I guess if there is a fault, there it hides). As soon as they go to "compact triplet" structure, the instance of 3-SAT is polynomial-time solvable using a trellis algorithm. Yes, very similar to the algorithm that is employed to decode convolutional codes.
In fact they're decomposing the initial 3-SAT problem into multiple "compact triplet" 3-SAT problems intersected using an AND operation. But as these intersected 3-SAT formulas use the same variables, without any interleaving (permutation) applied, the trellis algorithm still applies (just like solving for a convolutional encoder with > 1 check bits per bit).
Thinking once more about that: the compact triplet structure is clearly not general enough to express generic 3-SAT problems. This is like attempting to transform a quadratic optimization problem x^T*H*x involving a symmetric matrix H into a corresponding problem with a tri-diagonal matrix H.
The only way I see they could do the transform is by introducing exponentially many helper variables, thus moving the problem back into NP again. But it does not look like they're attempting something like that.
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Maybe I'm overlooking something, but to me it looks like they're doing the reduction to a polynomial-time problem already at the very beginning of the paper (I guess if there is a fault, there it hides). As soon as they go to "compact triplet" structure, the instance of 3-SAT is polynomial-time solvable using a trellis algorithm. Yes, very similar to the algorithm that is employed to decode convolutional codes.
In fact they're decomposing the initial 3-SAT problem into multiple "compact triplet" 3-SAT problems intersected using an AND operation. But as these intersected 3-SAT formulas use the same variables, without any interleaving (permutation) applied, the trellis algorithm still applies (just like solving for a convolutional encoder with > 1 check bits per bit).
Thinking once more about that: the compact triplet structure is clearly not general enough to express generic 3-SAT problems. This is like attempting to transform a quadratic optimization problem x^T*H*x involving a symmetric matrix H into a corresponding problem with a tri-diagonal matrix H.
The only way I see they could do the transform is by introducing exponentially many helper variables, thus moving the problem back into NP again. But it does not look like they're attempting something like that.