Slashdot Mirror


Microbes for Bioremediation

The San Francisco Chronicle has a piece discussing current efforts to clean up nuclear waste sites with microbes. Current treatment procedures generally involve pumping out the contaminated groundwater, filtering it, and pumping it back, which is rather expensive.

26 of 189 comments (clear)

  1. The old solution is retarded. by Dr+Reducto · · Score: 1, Informative

    "Current treatment procedures generally involve pumping out the contaminated groundwater, filtering it, and pumping it back, which is rather expensive."

    Wouldn't that solution just make lots more radiation contaminated water and parephenalia?

    1. Re:The old solution is retarded. by KnightNavro · · Score: 5, Informative
      Yes, a filtration scheme does result in a contaminated filter, but a bad filter is a lot better than bad water. Uranium in water is mobile, but U in a filter is easy to control. You'll never be rid of the uranium, but you can contain it.

      I'd be a little surprised if the concern with the uranium concentration is really the radiation; perhaps at the Oak Ridge, but almost certainly not at the mine tailings. If the concentration of non-refined U is so high radiation becomes a concern, you're more likely to die due to the fact uranium is poisonous in the same sense mercury and arsenic are poisonous. In any case, U isn't a good thing to have in the water supply.

    2. Re:The old solution is retarded. by qqtortqq · · Score: 2, Informative

      Right. You get a radioactive filter, and clean water. You can then box and bury the filter. Its difficult to box and bury a lake.

    3. Re:The old solution is retarded. by 1u3hr · · Score: 2, Informative
      Wouldn't that solution just make lots more radiation contaminated water and parephenalia?

      The idea was that microbes consume the dissolved uranium (and other nasty elements) and excrete them as insoluble compounds. So the water is clean and you have a pile of solid waste much much smaller than the original volume. You could recycle that or dispose of it (at least more safely than the original method of pouring it into a hole in the ground and forgetting it).

  2. Already done with sewage, right? by indros13 · · Score: 4, Informative
    My understanding is that microbes (read: bacteria) are already extensively used in the treatment of wastewater. For example, here is a portable toilet with microbial treatment. I salute the folks who have thought to look at the natural world for solutions to other man-made problems.

    --
    Under capitalism man exploits man. Under communism it's the other way around.
  3. The probably won't happen for awhile by The+Analog+Kid · · Score: 4, Informative

    They have GE Bacteria that will eat oil, to be used in oil spills. These however are not being used outside of labs, because of the consern of "What will happen when the the oil is gone? What are they going to do? Die, or find something else?" So I would think the same with will happen.

    1. Re:The probably won't happen for awhile by BrainInAJar · · Score: 4, Informative

      "What will happen when the the oil is gone? What are they going to do? Die, or find something else?"

      I'd assume they'd start to eat the natural oils that birds, fish, etc produce. "But they're only engineered to digest petroleum oils" That's the beauty of biology, it mutates into what you want it to exactly not do. Doesn't take that long either. Chernobyl 4 melted down in '86, and life is already thriving there (bacterial life, but life nonetheless)

    2. Re:The probably won't happen for awhile by drmaxx · · Score: 2, Informative

      In most cases the microbes are not the problem. There are hanging around everywhere and if they get enough food then they grow very fast. There many smaller oil spills that get cleaned just by natural microbes in the groundwater. The main limiting factor is in most cases oxygen. Yes, there are also microbes that can use nitrate, sulfate, iron-ores, ... for degrading oil; however, most spills contain much more oil then these second nutrient they feed on. Many remediation techniques actually don't add microbes but put oxygen, nitrate or iron (dumping your old car down a hole is not good enough!) into the ground.

  4. Re:Cure for Hiroshima/Nagasaki? by sn00ker · · Score: 5, Informative
    I'm not sure about Nagasaki, but Hiroshima has a background radioactivity count that is only very slightly higher than normal. Even at ground zero.
    So, as it currently stands, there's not much that microbes could do to "cure" Hiroshima. It's already highly populated after having to recover from near-total population loss, and I seem to recall reading somewhere that it has a birth defect rate that's the same as other Japanese cities. So much for the nuclear waste zone.

    --
    "God, root, what is difference?" - Pitr, userfriendly
  5. Interesting, but is it pratical? by toxic666 · · Score: 5, Informative

    OK, enough of the silly "Microbes will take over" and Frankenfood-inspired comments.

    Having read the article, it seems like a good way to precipitate soluble U ions as U oxides, or complex uranyl compounds. It appears to offer a way to mitigate impacts upon human health and the environment by precipitating U ions traveling in ground water so they do not discharge to surface water or pumped by potable wells.

    Bioremediation is nothing new. It works well with chlorinated solvents (PCE and TCE), especially in reduced, iron-rich ground water. The caveat for those compounds is, however, that they break down only so far, often leaving vinyl chloride -- a demonstrated carcinogen -- as the final step before there is not enough energy for them to survive by reductive dehalogenation. Basically, the microbes die becuase they do not have a source of "food."

    The same goes for aerobic microbes, like these appear to be; they combine dissolved metals with oxygen to precipitate them. That gets even more expensive, because you have to maintain the proper redox level by introducing O2 with hydrogen peroxide or ozone. It's expensive and prone to mechanical failure or the vagaries of the subsurface.

    These microbes may die out once their source of "food" depletes. However, the by-products should be assessed before they try to use this in a live environment, because sometimes the cure can be worse than the problem. There is also no economic analysis for this research, but it is likely way to early to determine how much it would cost to implement. It may be more reliable and cheaper to precipitate dissolved U by simply pumping a lot of oxygen into the ground water.

    1. Re:Interesting, but is it pratical? by toxic666 · · Score: 2, Informative

      Actually, I used to do environmental geological engineering and they did use bio in the ground. Tough and expensive, but sometimes feasible. I do like the bioreactor idea, but you're right, U extraction and refining are complex processes that result in a withes brew. This may have promise as a polishing process should dissolved U remain.

      Bugs in the ground are amazing. I once did an auto shop that had gray- and black-water leach fields side-by-side. Well, they did detailing and ended up dropping TCE and PCE into ground water. We defined the plume and during remedial design noticed the concentrations of those two chemicals were declining.

      Then it occurred to me, they used to have these little bottles of liquid you poured down the toilet to keep your septic tank from clogging. It's primary ingredient was TCE. Seems the black water provided bugs and those that like chlorinated solvents thrived. Strangely enough, they kept munching away and we had very little residual vinyl chloride. End result, there was no need to pump and treat.

      Saw the same things happen where dissolved gasoline constituents were exposed to black water; the benzene, toluene, ethylbenzene and toluene broke down over a period of time and we had to do no pumpimg and treating.

  6. Mining microbes are very common (copper mining) by jjh37997 · · Score: 5, Informative

    The story sounds like its using a method that the copper industry has been using for years, expect in this case with microbes that crave uranium instead if copper. They don't eat or destroy the uranium, just chemically transform it into insoluble forms that can be easily filtered out of groundwater.

    Biological heap leaching is an inexpensive way to extract the metal from low-grade ores where copper is bound in a sulfide matrix. As the microbes chew up the ore, which has been treated with sulfuric acid to encourage them, the copper is released and concentrated in a solution that flows into a catch basin. The metal is extracted, and the acid solution is recycled.

  7. Re:Cure for Hiroshima/Nagasaki? by toxic666 · · Score: 2, Informative

    Did you read and understand the article? A couple good rain storms washed the SURFICIAL contaminants in those cities into the sea.

    This process is being proposed for ground watter in which U is dissolved. It is, thus, mobile and can impact surface water and drinking water wells. The idea is to immobilize what is currently migrating downgradient.

    RTFA

  8. The point you're missing.... by spineboy · · Score: 3, Informative

    I believe the gist of the article is that the bacteria are able to turn a SOLUABLE form of uranium into a NON_SOLUABLE form. Therefor it is less ilkely to be dissolved (or far much less of it) into the groundwater and migrate to potable (drinkable) water suplies. Or You could "wash" the soil and introduce the bacteria into the water and have them "filter it out" , thereby purifying the water. It's been done with petroleum eating bacteria on oil spills, so why not nuke wastes. I even remember way back when I was taking some bacterial engineering classes, that some bacteria were selective enough to distinguish different ISOTOPES of elements - not 100% selective and therefore probably not good enough for nuke purification schemes..

    --
    ..........FULL STOP.
  9. Re:Screw the expense by toxic666 · · Score: 4, Informative

    That is a glib and reactionary set of comments. By your rationale, we should spare no expense because it is radioactive. Hey, I'll take a radioactive hazard that may kill me 30 years from now over gasoline leaking from a pipeline into my basement and exploding.

    And who gets to pay for it? The taxpayers and society. So, in managing hazards to the environment and people, we do this silly thing called engineering. It is not easy, but goes something like this:

    1) Define the problem. Not easy when dealing with contaminants in ground water that don't announce their presence.

    2) Define a goal that reduces the hazard to an acceptable risk, often an increase in health impact to humans by no more than 1 in 1 million.

    3) Assess the alternatives to achieve the goal. These microbes may be a new alternative.

    4) Design the most cost-effective system to achieve the goal.

    5) Maintain documentation and rationale for the decision-making process.

    6) Implement and assess the design. Since the problem and conditions are often not 100% defined due to economic considerations, you need to determine if the solution is working and adjust as necessary.

  10. Re:Ionizing radiation by wagnerer · · Score: 4, Informative

    I think you're thinking of alpha energies. Gammas pretty much max out around 3 MeV for radioactive decay and energy lines above 1.5 MeV are not very common. One way to look at it is the higher the energy the more unstable the radioactive atom is giving it a shorter half-life. Short half-life atoms don't stay around long so all you get are a few rare isotopes emitting energies above 1.5 MeV seen outside reactors and accelerators.

    For gamma-rays carbon based life is pretty transparent. The gamma ray will rarely deposit all its energy in one spot instead it knocks an electron off an atom and gives it a few 100 kev to work with and then proceeds on its merry way. Anything in the path of that electron is hammered but for the most part that's just inter/intra-cellular fluid which produces some free radicals that are quickly scavanged. Its only a problem when the DNA helix is hit or possibly the cell membrane, both fairly low in volume compared to the whole cell. Internal alpha particles are another matter entirely. They have energies around the 5 MeV range and an alpha is like a cannon ball shot in a fab shop. Anything it hits is a goner since all that energy is deposited in a very small volume.

    As for microbes surviving high radiation levels you should look at some articles concerning high microbe levels in reactor core coolant streams. They appear to have highly redundant DNA with very good repair mechanisms. Unfortunately the processes they use seem to only work for for ring DNA strands found in bacterias. So don't look for a human drug soon to make you rad proof. D. radiodurans is one species that was found in the shielding water of high activity sources.

  11. Re:Interesting but crappy test subject (uranium) by BrokenHalo · · Score: 2, Informative

    There are many bacteria (e.g. some species of Pseudomonad) which can feed on hydrocarbons and/or aromatics. That's why they filter aviation fuel before pumping it into aircraft. As for, err, human detritus, again that's quite do-able. That's how composting toilets work; you don't even have to breed up special bugs to do that.

  12. Re:Nuclear energy is clean by shepd · · Score: 3, Informative

    >If Oak Ridge has taught us anything, it's that even the best laid plans can end up destroying the ecology of an area.

    Extending this logic, sitting in a parked car on your driveway for your entire lifetime will mean that you will have at least 2 or 3 car accidents.

    Perhaps you should read something about the world's safest nuclear reactors; reactors so safe there are no deaths as a direct cause of it being a nuclear reactor? Even the Sierra Club doesn't seem to have any serious dirt on this reactor, apart from weapons sales blunders. Search for it yourself!

    Hmmmm, zero deaths vs. many. Hard to decide. Perhaps if I were anti-people it'd be easier. You aren't anti-people, are you?

    --
    If you could be told what you can see or read, then it follows that you could be told what to say or think - BoC
  13. Here's a site. by Population · · Score: 4, Informative

    http://www.dtra.mil/news/fact/nw_hnforce.html

    They were "airburst" nukes. That means that there isn't as much contaminated material as there would be if the fireball contacted the earth.

    With an airburst, the contamination can be washed away. Even though this only moves the residual contamination to another area.

    If this had been a groundburst, there would have been a lot more radiation contamination to clean up.

  14. Re:Cure for Hiroshima/Nagasaki? by Anonymous Coward · · Score: 1, Informative

    "just how *did* they clean up these cities? "

    They did absolutely nothing. They even rebuilt the building using the same cement leftover from the blast.

    The bikini atoll test(1954) was a much more powerful bomb(hydrogen) and those people have already returned home(1999). It doesn't take the earth long to erase the evidence of any human activity, including radiation.

  15. Groundwater Bioremediation of Hydrocarbons by npendleton · · Score: 5, Informative

    Groundwater is poluted by engine oil, petrol, and jp5 jet fuel leaking from storage tanks in all 50 states and every country on the globe.

    Hydrocarbon groundwater pollution is a much more widespread problem than soluable uranium. People with water wells 10 miles from Miami International Airport (MIA) can smell JP5 jet fuel in their well water. This is clear cut opportunity for bioremediation. People store and therefore leak hydrocarbons where they can and do use them.

    As population and water needs rise, and supply dwindles, the US Federal Government has been forced to act. In the 1990's, to reduce the hydrocarbon pollution of groundwater, the US Government forced every gas station (petrol filling station) to dig up every storage tank and the soils surrounding the tank, and leave the dirt in piles to "off gas" the hydro carbons for months. And after off gassing, station owners had to replace the tanks with less leaky modern tanks.

    Because water is essential for life, yet difficult to move economically, there will be increased border wars and politcal fights to control rivers and aquafers. We are watching a war for control of the oil rich country of Iraq. We will see similar fights and politcal disputes for control of rivers and dams on many international rivers. We will also see a marked rise in the trade of grain, one of the few water intensive commodities that can be traded economically.

    All of this spells a golden opportunity for bioremediation of hydrocarbons, to help cities, farms, and countries to improve supply of potable water.

    Mac refugee, paper MCSE, Linux wanna be
    and first person to mention knoppix on /.

  16. Re:Reactor Varieties by jericho4.0 · · Score: 2, Informative
    Chernobyl did not explode, it had a partial meltdown. No reactor can explode, in the sense that a nuclear weapon explodes.

    Canadian reactors (Candus) do not use weapon grade plutonium and uranium, but they do produce (concentrate) it, like most reactors in most countries.

    Other than the factual errors, youre post is correct :-). Differences in design of reactors can have a big impact of saftey. Any reactor being built today is probably incapable of a full meltdown.

    --
    "A language that doesn't affect the way you think about programming, is not worth knowing" - Alan Perlis
  17. Re:Reactor Varieties by canajin56 · · Score: 3, Informative

    Canadian reactors can be used to burn weapons grade plutonium and uranium, if mixed in with their regular fuel (That is a simplification) During the Clinton administration, they wanted to do this to dispose of a bunch of US nukes, but as you say, nobody wanted it shipped anywhere near THEM. There is also the issue of security: A terrorist would LOVE to get his hands on some disassembled nuclear weapons.

    But generally, plutonium is not burnt in Candu reactors. They usually run on unenriched uranium. This saves the environment because the enrichment process is very polluting, but it also means more plutonium in the waste. Less waste, but longer lasting.

    Another environmentally friendly feature of a Candu reactor is that, rather than having carbon rods to absorb the neutrons and control the chain reacton, the reacton relies on a medium of heavy water, and is controlled that way. To shut down an American reactor, all of the control rods must be fully inserted. But if the reaction has progressed to far, this may not be enough. In a Candu reactor, it can be shut down by draining the heavy water from between the fuel rods. Without the medium to slow the neutrons, the reactron cannot progress. In the event of a catastrophic safety failure, where the system does NOT drain the reactor, the very act of overheating and rupturing the housing would drain the medium away (In theory, it hasn't happened yet, that I know of) thus stopping the reacton.

    They are, however, water cooled, so you end up with thermal pollution of the lake you are on. But not radioactive pollution, since the water used to turn the turbines is a closed system, and the external water is only used to cool the steam, which is not sufficantly radioactive to contaminate the coolant water in any appreciable way, AFAIK.

    --
    ASCII stupid question, get a stupid ANSI
  18. Re:Reactor Varieties by Aglassis · · Score: 5, Informative

    You said: "Canadian reactors use weapons grade plutonium and uranium, rather than whatever it is that other reactors use (which is how India and Pakistan got their hands on nuclear material -- from nuclear reactors bought from Canada). I remember there was a big fuss during the Clinton administration, because the plutonium and uranamium from a number of decomissioned nuclear weapons was going to be shipped to Canada, and people on both sides of the border weren't too keen on that."

    Canadian reactors are not initially fueled with plutonium. They are just not highly enriched (where the fraction of the isotope U-235, which occurs 0.7% naturally, is increased). The consequence of this is that in order to have a self-sustaining chain reaction (criticality), the neutron flux must be higher. This is because the Candu reactor uses slow-fission which utilizes U-235 as a fuel and not U-238. In order for the core to remain critical (where on average one neutron from a fission event goes on to cause another fission vice being absorbed by another nucleus or escaping the boundary of the core) it has to be very large size and have a very high neutron flux (as compared to a more enriched core which could be smaller and have a lower neutron flux and stay critical).

    One consequence of a core with a very high neutron flux is that U-238 can absorb a neutron (which is helped because the core utilizes slow fission unlike a nuclear bomb), become U-239, undergo 2 beta decays and form Pu-239. Pu-239 can also undergo fission like U-235 and be used as a fuel (odd numbered atomic mass numbers of very heavy elements will undergo slow fission but even numbers will not). This is one of the reasons why natural uranium and thorium (which would produce U-233) could potentially create more fuel over time in the reactor (as the U-235 is depleted). Since it is much easier to make a nuclear bomb from plutonium than the brute force method of seperating U-235 from natural uranium this is obviously a potential threat for nuclear weapons poliferation around the world if these reactors are sold.

    You asked: "So -- as far as environmentally friendliness is concerned, how do the different types of reactors stack up?"

    When you think about environmental friendliness there is short term safety (immediate event of casuality) and long term (groundwater and storage of waste) concerns.

    In the short term the major concerns are preventing the reactor from breaking and spilling its fission fragments (which is the VERY highly radioactive waste in a reactor compared to everything else which is relatively lowly radioactive), and if it does break, by containing it. Preventing the reactor from breaking is pretty much controlled by good engineering practice of operating it and by competent design. If we've learned anything from the Chernobyl accident, the least of which is that *only* the people who are trained to operate and know the most about the reactor should be allowed to do any test (or any operation for that matter). Once management steps in and decides that they know how to operate the reactor better than the operators themselves, there is a serious problem. Containment is much simpler. You put up several barriers to prevent radioactive fission gasses from escaping. The final one, the most obvious one, is the cement dome that covers nuclear power plants. But other methods of containment are also useful, such as the pebble bed design where each fuel particle is encased in a ceramic sphere that can contain all fission product gases ever produced by that particle. In the worst case accident the particle will not melt or lose any of its ability to hold the gasses. Future reactors will be much safer due to designs like this (in fact the NRC has rated some as requiring "no evacuations under any accident condition", meaning that they don't think a meltdown can occur).

    For long term concerns, continuous sampling and monitoring as well as storage of radioactive waste are the concerns. As long as there is

    --
    Suddenly, the hairy finger of a familiar monkey tapped me on the shoulder. It was time.--G. T.
  19. I live in Oak Ridge, I work at the National Labs. by nicodemus05 · · Score: 5, Informative
    I agree completely with the people who are saying that there is a thriving ecosystem around the lab. I'm looking out my window right now, and I see geese, swans, ducks, a groundhog, wild turkeys, and a bunch of starlings. There are deer corpses along Bethel Valley Road (a 10 mile or so stretch from downtown Oak Ridge, if it can be described as such, through the lab campus) nearly every morning, a tribute to the growth potential of a population shielded by armed guards from predators and rednecks with rifles.

    What those who speak in praise of the city haven't mentioned is that the swan pond that I'm looking at is surrounded by a fence, that you can't fish anywhere downstream of the labs for miles and miles, and that there are still barrels of STUFF that we don't even know exist buried around the countryside. Sure, on the surface things are fine, but that's because the heavy metals have long since sunken into the earth.

    It's not like the situation hasn't gotten infinitely better since the initial mismanagement of the lab (alluded to by a previous poster and by Richard Feynmann's 'The Pleasure of Finding Things Out'). We built an onsite waste management facility, as part of the cleanup led by Bechtel Jacobs. It was a step in the right direction for the lab, as it allows us not only to repair damage already done, but to prevent causing further harm to the environment as research on radioactive materials continues. (side note: we prefer the term 'rare isotope'... It doesn't scare the populace). The cleanup process was not painless, as this proposal by Bechtel Jacobs (the company leading the multi-billion dollar effort) and article from the Knoxville News-Sentinel indicate. We're nearly done, though. Occasionally something surprises us, but the situation's better than it was.

    So, on to the article at last... These microbes don't have a huge utility value here, but they have great potential. Chernobyl, anyone? If there's another uncontained meltdown, these little buggers can be deployed almost immediately (via aerosol spray delivered in an overfly by crop dusters) to begin to counteract the fatal seep of irradiated cadmium and contaminated nickel. It's not of use now, but it's a valuable tool to have in our box.

    --
    while (!sleep){

    sheep++;

    }

  20. Hooray for transmutation of elements by delmoi · · Score: 2, Informative

    Well, I think this Slashdot headline is a little misleading, it makes it sound like these microbes are somehow removing radioactive material, which is obviously impossible. You can't change one elemental isotope into another one with any chemical reaction (which means no biological reaction either)

    What they're doing is changing one molecule involving uranium (which is water soluble) into another molecule involving uranium (which isn't). Everything stays just as radioactive, but not dissolved in water.

    --

    ReadThe ReflectionEngine, a cyberpunk style n