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RNA Interference Leads To Nobel Prize

gollum123 writes "The Nobel Prize for medicine has been awarded to two US scientists who discovered a phenomenon called RNA interference, which regulates the expression of genes. From the article: 'The breakthrough has also given scientists the ability to systematically test the functions of all human genes. [...] The Nobel citation, issued by Sweden's Karolinska Institute, said: "This year's Nobel Laureates have discovered a fundamental mechanism for controlling the flow of genetic information."'"

29 of 105 comments (clear)

  1. in other news... by macadamia_harold · · Score: 3, Funny

    The Nobel Prize for medicine has been awarded to two US scientists who discovered a phenomenon called RNA interference, which regulates the expression of genes.

    In other news, President Bush has awarded the Congressional Medal of Honor to two US scientists who discovered the gene which regulates the expression of opinion.

    1. Re:In other news... by eebra82 · · Score: 3, Informative

      This news was announced October 2. I checked the Swedish news papers who are very accurate when it comes to Noble prize awards (it's a Swedish prize after all).

      On October 3, they will announce the winner(s) in physics, followed by chemistry the day after. Prize in economy, October 9.

  2. Paper tape by BadAnalogyGuy · · Score: 2

    It seems that DNA is the 'paper tape' component of the genetic Turing machine. mRNA seems to be the data bus and RNA interference is the ALU.

    If the basic building blocks of life (genes) can be reduced to algorithms, how much longer until we can reduce the rest of our bodies to computer-replicable algorithms?

    1. Re:Paper tape by Corynorhinus · · Score: 2, Informative

      Unfortunately its not that simple. The "central dogma" of DNA --> RNA --> Protein has been steadily added to over the past 20 years. Mechanisms such as RNAi have been added to a growing list of different regulatory levels, from transcription to translation, alternative splicing, to protein modifications, to chromatin density...etc. Discoveries like RNAi continually show us that our "programming language" is much more complex than feeding instructions on a paper tape.

    2. Re:Paper tape by BadAnalogyGuy · · Score: 4, Interesting

      Displaying a comment on a weblog in a browser in a windowing user environment on an OS running on a slew of hardware components each handling its own logic and interfacing with each other is also a very complex task. Yet it is still reduceable to instructions on a paper tape.

    3. Re:Paper tape by Corynorhinus · · Score: 5, Informative

      DNA doesn't tell you the whole story. A developing zygote doesn't respond only to its own genetic makeup, but also to prepackaged mRNA signals from the parents, whose DNA differs from that of the zygote. The zygote's environment and packaging determines its phenotype as much as its own DNA does in the early stages of development. Viruses that convert RNA to DNA show that the messaging isn't one-way and that DNA can be reprogrammed on the fly. It is this adaptability that makes living things so adaptable and diverse. If DNA was merely a static instruction set, the diversity and complexity of life we see today wouldn't be possible.

    4. Re:Paper tape by BadAnalogyGuy · · Score: 2, Insightful

      So you're saying that in addition to the program data on the tape, that additional environmental factors such as mRNA and RNAi (aka the HW platform) are just as much part of the total machine as the data is.

    5. Re:Paper tape by Corynorhinus · · Score: 3, Funny

      Yes, but due to a few billion years of evolution, the interactions between the genome, the protein interaction networks, and RNA signalling make the prospect of writing code for life forms almost as bad as writing Windows Vista in BASIC, Java, and Lisp combined... I wish it was easier (I work in the computational biology field) but evolution doesn't comment its code very well.

    6. Re:Paper tape by BadAnalogyGuy · · Score: 2, Funny

      Sounds like a Linux distro, to be honest.

    7. Re:Paper tape by glwtta · · Score: 4, Informative

      It seems that DNA is the 'paper tape' component of the genetic Turing machine. mRNA seems to be the data bus and RNA interference is the ALU.

      In the "Genetic Turing Machine" the 'tape' is comprised of DNA, RNA (in various forms), and proteins; the 'head' is mostly protein and RNA; and the FSM involves DNA, RNA, and protein. Oh, with some other crap, like metals, sprinkled throughout. Information is encoded in DNA and various other epigenetic systems (about which we know very little at this point). Reading and writing from/to this 'tape' is accomplished with mechanisms built from proteins and RNA, proteins whose production is regulated by other proteins and various forms of RNA.

      There is no similarity in the fundamental workings of biological systems and computers, except perhaps (depending how you feel about the Church-Turing thesis) their computability power.

      Computer metaphors are generally useless, whether you are trying to explain computers using cars, or humans using computers.

      Oh, but reducing our bodies to algorithms is simple - all you have to do is model the physicals properties of all the atoms that comprise the body. It's simply a matter of processing power.

      --
      sic transit gloria mundi
    8. Re:Paper tape by Agripa · · Score: 2, Informative

      Do you mean to say that viruses could be introduced into an organism to change DNA? If so would it be possible for there to be something like inheritance where genetic characteristics propogate directly between organisms rather than through reproduction?

      I am not entirely clear what you are asking but there are cases where children express phenotypes controlled by the mother's DNA. In some species of snail, the direction of the child's shell rotation is controlled by the mother's genes.

    9. Re:Paper tape by Roxton · · Score: 3, Informative

      It's called horizontal gene transfer, and it's more common than you think.

  3. Re:And all of you athiests have been so smug... by CosmeticLobotamy · · Score: 4, Funny

    I'm not sure about a cross, but it sure does look like a Maxipad with wings. I think the "God's a woman" crowd may have something, there.

  4. schedule for Nobel Prize announcements by stuartrobinson · · Score: 4, Informative

    Here's the schedule for future announcements: http://nobelprize.org/prize_announcements/

  5. I call shenanigans by letsgolightning · · Score: 5, Funny

    The Nobel citation, issued by Sweden's Karolinska Institute, said: "This year's Nobel Laureates have discovered a fundamental mechanism for controlling the flow of genetic information."

    I'm pretty sure condoms have been around for a while.

    --
    2^4 * 3 * 20929
  6. Unexpected discovery by DebateG · · Score: 5, Interesting
    The discovery of RNAi is one of science's best stories.

    In the 1980's, Dr. Rich Jorgensen was a botanist interesting in making prettier petunias. He identified chalcone synthase, an enzyme needed to manufacture the purple pigment in the flowers. He reasoned that the more chalcone synthase there was, the purpler the flowers would become.

    Normally, the cell DNA for an enzyme is copied into RNA, which is made into protein. It seemed logical that increasing the RNA would lead to more protein.

    In fact, the statement
    DNA -> RNA -> Protein
    is often called the Central Dogma of Molecular Biology.

    Because single stranded RNA was so hard to synthesize, Jorgensen injected massive amounts of double stranded RNA for chalcone synthase into the petunias. Much to his surprise, the petunias didn't become more purple: they became white. Somehow, increasing the enzyme RNA number actually suppressed the protein.

    This Nobel Prize is well-deserved. By elucidating the mechanism of this paradoxical response, they challenged the Central Dogma. Moreover, by allowing scientists to "knock-down" genes, RNAi can be used to study the loss a single gene quickly and cheaply. It is very difficult to find a published biology paper today that doesn't use this technique.

    1. Re:Unexpected discovery by Anonymous Coward · · Score: 3, Informative

      This isn't quite correct... The phenomenon identified by Jorgenson et al. was cosupression... What they actually did was transfer an extra copy of the gene (DNA) for chalcone synthase into the petunia. What wasn't known until some years later is that this actually is based on the same mechanism as what happens in RNA interference. Essentially, the overproduction of the chalcone synthase is recognized by the plant, and a second strand of RNA is made, this then leads to the chalcone synthase mRNA being chopped up. For quite some time cosupression was a mystery and it wasn't immediately clear that it was the same thing as RNAi.

    2. Re:Unexpected discovery by Hrshgn · · Score: 2, Interesting

      I have to agree completely. RNAi is an amazing tool. We are using it every day in our lab. Before you had to generate knock-out animals to suppress the action of a gene. A very expensive and slow method.
      Now you can just add either RNAi directly to cells (a bit expensive), transfect cells with DNA which expresses RNAi (cheap) or even integrate a gene expressing RNAi into the genome of cells (laborious but very handy).

      Hrshgn

    3. Re:Unexpected discovery by srblackbird · · Score: 2, Informative

      RNAi explained in a very clear way.
      http://www.pbs.org/wgbh/nova/sciencenow/3210/02.ht ml
      Left-under is the video

      --
      "The test of the morality of a society is what it does for it's children." -Dietrich Bonhoeffer
  7. Re:And all of you athiests have been so smug... by reverseengineer · · Score: 2, Informative

    The "cloverleaf," or cross shape which is indicative of tRNA is only its secondary structure- the 3D form it assumes in vivo looks more like an "L" shape, as seen here.

    --
    "FDA staff reviewers expressed concern about the number of patients who were left out of the study because they died."
  8. my impression of Mello and Fire by myc · · Score: 5, Interesting

    IAACES (I am a C. elegans scientist) and have had the opportunity to interact with both Craig Mello and Andy Fire (albeit briefly) during and after seminars. An interesting study in contrast.

    Craig looks more like a rock star than a Nobel Prize winning scientist in person; he's got the faded blue jeans/shirt hanging out look down pat. He's also ~6'5 and has great hair. Looks aside, Craig is one of the most intelligent people I have ever met. Some of the science he has done is simply mind-blowing (not necesarily the RNAi stuff). Back in the late 90's when Craig was just beginning to work on RNAi I remember going to a seminar of his and thinking "wow, this stuff will win the Nobel Prize one day."

    Andy on the other hand looks exactly like the egghead stereotype of an absent-minded professor. Balding, wears thick round glasses, sweater and khakis. While not as physically imposing as Craig, Andy has this incredibly modest demeanor that really demonstrates what it means to be a *top notch* academic. No pretenciousness at all. As a "worm person", I will be eternally grateful for Andy for providing a vector kit for the C. elegans research community essentially free of charge. Even without the RNAi and other research accomplishments the worm community has much to thank Andy for.

    --
    NO CARRIER
    1. Re:my impression of Mello and Fire by kestasjk · · Score: 2, Funny

      Thanks, I was pulling my hair out wondering what they looked like. :-P

      --
      // MD_Update(&m,buf,j);
  9. RNAi 101 by DebateG · · Score: 5, Informative
    From the comments here, it's pretty clear that very few people on Slashdot have any clue what RNAi is.

    Ever since the 1920's, scientists knew that DNA was the inheritable component that held the genes. They also knew that protein was the actual workhorse, the microscopic machines that accomplished cellular processes. Eventually, they elucidated that DNA copies itself into RNA, which is then converted into protein. Watson and Crick determined the structure of DNA, and proposed the mechanism for conversion of DNA to RNA.

    Since Watson and Crick's time, we have been using the Central Dogma of Molecular Biology:

    DNA -> RNA -> protein

    Increase the amount of DNA? That means more protein. Increase the amount of RNA? That means more protein.

    The big question in biology is now: given that there is usually just one gene for each protein, why do you have drastically different amounts of protein?

    What these guys show is that the Dogma really isn't entirely true. Sometimes you can add certain RNAs and make *less* protein. Moreover, they showed that this mechanism was conserved in organisms ranging from yeast to microscopic worms, to humans. In other words, small RNA molecules not only directed the synthesis of protein, they actually could be used to suppress it. An entirely new level of cellular regulation was elucidated.

    But to be quite honest, that wasn't the reason they won the Nobel Prize. It is for the experimental implications. Back before RNAi, if I were studying My Favorite Gene, the classical way to do it would be either to find a small molecule inhibitor (very difficult and expensive to find one) or to genetically modify cells to stop making it (also very time consuming and difficult). Now, with RNAi, I have a third, very fast method. Simply construct RNAi using a pretty standardized cookbook, order it online for around $100, and stick it in the cells. See what happens. Experiments that used to take months to years and cost thousands of dollars could now be done in a few days for a few hundred dollars.

    I'll put it in terms you guys can probably understand. Research without RNAi is like debugging without a debugger. Yeah, you can do it, but it's often time-consuming and confusing.

    1. Re:RNAi 101 by recordMyRides · · Score: 2, Informative

      Just to nitpick - it wasn't until 1944 that Oswald Theodore Avery, Colin MacLeod and Maclyn McCarty established that DNA was the "transforming principle". Read about it here: http://www.genome.gov/Pages/Education/Kit/main.cfm ?pageid=28.

  10. Re:oh-oh... genetics by ccmay · · Score: 2, Interesting
    for all you Americans read that as "lalalalalalalalalalalalalalala genetics lalalalalalalalalalalalaa"

    Sometimes I wonder if Eurotrash sneering at the supposed lack of scientific sophistication here is related to insecurity over the "brain drain" from Europe to America that has helped give us more Nobel prizes than any other nation by far.

    -ccm

    --
    Too much Law; not enough Order.
  11. Re:oh-oh... genetics by someone1234 · · Score: 2, Funny

    I read somewhere that this so called 'brain drain' has been reversed for genetics. Asia is now leading in this kind of research.
    I think the GP post meant this too.

    Playing with the gene knobs is surely not what we, humble creations of the Intelligent Designer, are allowed to do.
    That's what the guvner said, hmm?

    --
    Patents Drive Free Software as Hurricanes Drive Construction Industry
  12. Of course, this is only one theory by Rogerborg · · Score: 2, Funny

    According to top White House Scienticians, we also have to give equal credence to the ISGB3 hypothesis, in which personal characteristics are regulated by an Invisible Sky Giant shouting "BOOGLY BOOGLY BOOGLY".

    --
    If you were blocking sigs, you wouldn't have to read this.
  13. Nature article by nucal · · Score: 2, Interesting

    Right here . Although I must beg to differ, with you - the mechanism wasn't obvious to anyone until this study. For what it's worth, it was in the "Letters" section of nature - it wasn't even a full article:

    Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

    ANDREW FIRE, SIQUN XU, MARY K. MONTGOMERY, STEVEN A. KOSTAS, SAMUEL E. DRIVER & CRAIG C. MELLO

    Experimental introduction of RNA into cells can be used in certain biological systems to interfere with the function of an endogenous gene,. Such effects have been proposed to result from a simple antisense mechanism that depends on hybridization between the injected RNA and endogenous messenger RNA transcripts. RNA interference has been used in the nematode Caenorhabditis elegans to manipulate gene expression,. Here we investigate the requirements for structure and delivery of the interfering RNA. To our surprise, we found that double-stranded RNA was substantially more effective at producing interference than was either strand individually. After injection into adult animals, purified single strands had at most a modest effect, whereas double-stranded mixtures caused potent and specific interference. The effects of this interference were evident in both the injected animals and their progeny. Only a few molecules of injected double-stranded RNA were required per affected cell, arguing against stochiometric interference with endogenous mRNA and suggesting that there could be a catalytic or amplification component in the interference process.

  14. Re:And all of you athiests have been so smug... by Zaatxe · · Score: 2

    Remember, kids... "Intelligent Design" doesn't imply "Designed Intelligent".

    --
    So say we all