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Why the Cloud Cannot Obscure the Scientific Method

aproposofwhat noted Ars Technica's rebuttal to yesterday's story about "The End of Theory: The Data Deluge Makes the Scientific Method Obsolete." The response is titled "Why the cloud cannot obscure the Scientific Method," and is a good follow up to the discussion.

36 of 137 comments (clear)

  1. datasource != process by Bandman · · Score: 5, Insightful


    Because a datasource isn't a process?

  2. missing link by lhorn · · Score: 4, Insightful

    http://arstechnica.com/news.ars/post/20080625-why-the-cloud-cannot-obscure-the-scientific-method.html
    I like the fact that the web and search/aggregate engines may combine vast amounts of data in ways we now
    cannot imagine - it expands the field for new scientific research enormously. Replace science? No.

    --
    accept no limits but time
    1. Re:missing link by kalirion · · Score: 3, Funny

      What, you mean I can't just google for "unified field theory" and get the right answer? Why does the universe have to be so hard?????

  3. Re:FYI by Sethus · · Score: 2, Funny

    The author's head is completely up in the clouds...

    --
    Posting with out proof reading since 2001.
  4. Bullshit bingo by Anonymous Coward · · Score: 5, Funny

    Latest addition to bullshit bingo cards:

    CLOUD

  5. It's a good rebuttal by Hoplite3 · · Score: 5, Insightful

    I'd say that the models are the science. They're how you explain your data. They provide evidence that the experiments make sense, and they guide you by making predictions you can test.

    Moreover, SIMPLIFIED MODELS are good science. Understanding which details can be omitted without impacting the predictive ability of your model shows you know which effects are important and which aren't.

    --
    Use the Firehose to mod down Second Life stories!
  6. Correlation is not causation by tist · · Score: 4, Informative

    A large source of data that has a correlation does not somehow imply causation. Even if it works under some conditions (or even all conditions). The science happens when the causation is determined and then applied.

    1. Re:Correlation is not causation by damburger · · Score: 3, Informative

      Wrong - imply has a very specific meaning to mathematicians and scientists. 'A implies B' means that if A is true, B MUST be true also.

      --
      If we can put a man on the moon, why can't we shoot people for Apollo-related non-sequiturs?
    2. Re:Correlation is not causation by NewbieProgrammerMan · · Score: 2, Informative

      Hey, don't try to pin all that stuff on mathematicians: the original cloud-gushing author, Chris Anderson, says, "background is in science, starting with studying physics and doing research at Los Alamos."

      --
      [b.belong('us') for b in bases if b.owner() == 'you']
    3. Re:Correlation is not causation by maxume · · Score: 2, Interesting

      Fine. I'll try to restate my point using more specific language.

      The fact that correlation does not imply causation isn't nearly as troublesome as the volume of "Remember folks correlation!=causation" would have us believe; lacking other evidence, it is a reasonable assumption to start with.

      --
      Nerd rage is the funniest rage.
    4. Re:Correlation is not causation by damburger · · Score: 2, Interesting

      But nobody said that here, so your whole point is a strawman. I think its safe to assume that nobody on /. thinks correlation!=causation because that would make all science impossible.

      --
      If we can put a man on the moon, why can't we shoot people for Apollo-related non-sequiturs?
    5. Re:Correlation is not causation by eli+pabst · · Score: 3, Interesting

      You're exactly right. In fact if anything, science has started moving *away* from the kind of purely computational and statistical correlations that you get through data mining. Granted they are extremely important for generating hypotheses, but journals are much less likely to accept a paper without some kind of experimental validation.

      The large scale genetic association studies are a great example. There was a day that you could publish a paper solely describing a correlation between a variant in gene X and its association with disease Y. However, because of the way we do statistics in science, sooner or later you'll find a statistically significant correlation simply due to chance alone. In fact the epidemiologist John ioannidis wrote an article about this (that I believe appeared on Slashdot as well). Now you're often required to show some kind of experimental validation that there is a biological basis that verifies the statistical correlation. The scientific method is not going away anytime soon.

    6. Re:Correlation is not causation by 99BottlesOfBeerInMyF · · Score: 2, Insightful

      In science, the phrase usually used is "correlation does not imply a specific causation." It does, of course, imply some correlation and most of modern science is noticing correlations and testing for causation.

    7. Re:Correlation is not causation by mckorr · · Score: 2, Interesting
      I'm a mathematician, and I have never heard a colleague make the claim that science is obsolete.

      Mathematics is the language of science, and there has never been an advancement in either one without an accompanying advance in the other.

      A mathematician might "gush" about clouds of data, and work on the mathematics of it, but if he insisted it made science obsolete he'd be tossed out on his ear.

      Oh, and string theory? That was the physicists. The mathematicians were pissed off that someone found a use for topology, which we considered pure mathematics for its own sake and unconnected to the real world. Damned physicists ruined our fun.

  7. All models are wrong, but .... by gopla · · Score: 4, Insightful

    All models are wrong, but some are useful.

    We still need scientific methods to develop useful models and understand and refine the existing models. When Newton defined his mechanics that was the state of the art in his era, and now we have progressed to quantum mechanics which might be refined tomorrow.

    But mere observation of some phenomena is not sufficient to postulate the behaviour in a changed condition. A scientific model and its rigorous application is required for this. Correlations drawn from the cloud cannot substitute it.

    gopla

    1. Re:All models are wrong, but .... by 99BottlesOfBeerInMyF · · Score: 4, Insightful

      All models are wrong, but some are useful.

      All models are wrong, to some degree. A better way to put it is all models are imprecise, but some are precise enough to be useful. 'Wrong' is a very flexible word and can easily lead to a misunderstanding in this context.

  8. Don't blame the author's incompetence by ruin20 · · Score: 2, Interesting

    The point of the last story was horribly miscommunicated. There were two main points. The first is that data is expanding in such scope that hierarchal organization systems don't work and that the second is we're approaching a time where the method or analysis of data to show causation will come from correlation, because you can determine all the variances due to the fact that all the variables have been accounted for. Look at the human genome project or folding at home. I don't think this is completely true, but lets not bash the idea or miss the point just cause the original author's a complete bumbling moron.

    --
    Oh honey look... How cute... an angry slashdotter!
    1. Re:Don't blame the author's incompetence by phobos13013 · · Score: 3, Insightful

      You seem to be missing a fundamental flaw in the argument. No matter how many parameters you account for a) you can never account for ALL parameters of this system we call life (if for no other reason, there may well be some we dont know about yet!), and b) most importantly, even if you DO have all the parameters and the results show a correlation, there is no logical jump one can make that says it is the cause of the observed behavior.

      Truly what yesterday's article was saying is that causation or correlation is meaningless if you have a mimic of the real world in the form of a collection of data. You don't need a model that is accurate or valid or anything. You just need to run the data in the exact replica of reality. This is the simulacrum. The first problem is that data does not just run itself. At the least it needs an algorithm to be processed to a result. Thats the model, without its just useless data, which has been mentioned already yesterday in comments. But second, the problem with even ATTEMPTING such an idea is that you lead yourself into a situation where you "predict" the future and then operate to become that future thus destroying the creative nature of humanity and become the self-fulling prophecy of machine code!

      Keep in mind i speak mostly of social sciences that try to pattern human behavior. For hard sciences, etc., all you have done is created a simulation of reality, but it tells you nothing about the reality. It merely mimics it. There is no insight into creating a map the size of the United States, at best it is a work of art.

      --
      ...and it should be known by now
  9. Nice rebuttal, bad example. by Angostura · · Score: 4, Informative

    In general I'm right behind the rebuttal. However John Timmer chooses a very bad real-life example as his rebuttal champion.

    He asks: ...would Anderson be willing to help test a drug that was based on a poorly understood correlation pulled out of a datamine? These days, we like our drugs to have known targets and mechanisms of action and, to get there, we need standard science.

    These days we may like our drugs to have these attributes, but very often they don't. There are still quite a few medicines around that clearly work and are prescribed on that basis, but for which there is only the haziest evidence as to how exactly they work.

    The good thing about the scientific method, however is it gives us a framework to investigate these drug's actions - even if the explanation is still currently beyond us.

  10. Marketing is not a Science by phobos13013 · · Score: 4, Insightful

    Truly, the whole reason someone like Mr. Anderson could claim the end of science because of data is that he is a writer, a thinker, and large part businessman. Businessmen do not think about Science and how to use it to come with a method that produces a conclusion. He uses information to come up with ways to illicit a reaction in people. So to him data is more important than science because he uses it for his purposes. That is marketing, and the "science" of marketing has almost always been that way.

    Mr. Anderson was not prescient in any way, he was just speaking his perspective. The only thing is we must be careful to even consider his proposition as a valid reality worth pursuing. Not for true scientists, but from a social perspective, or it will truly be the end of science. There are some in power as it is already attempting to make this happen.

    That said, I almost consider responding to yesterday's article as falling for the argument. But, since it hit the /. this article is as cogent a rebuttal as one can make.

    --
    ...and it should be known by now
  11. I'm moonlighting in bioinformatics by damburger · · Score: 5, Interesting

    And can back up this rebuttal with a practical example. I am a physicist, I know sod all about blood samples, or proteins, or cancer. I get a pile of mass spec data (about a billion data points or so on some days) and through binning, background subtraction, and a string of other statistical witchcraft I produce a set of peaks labeled according to intensity and significance.

    This does not make me a cancer researcher. This data has to go back to the cancer guys and they have to pick out the Biomarkers and thus develop new diagnostic tests, based on principles that I don't understand. I am master of the information but entirely blind as far as the science is concerned. Same goes for google.

    --
    If we can put a man on the moon, why can't we shoot people for Apollo-related non-sequiturs?
  12. Duh! by es330td · · Score: 5, Insightful

    When I read the original article my thought was that someone was just trying to write something to get noticed. The Scientific method, IMHO, is all about a person or group of persons using a logical process to determine the vailidity of an idea. Observing massive amounts of data can reveal relationships that may not have been noticed in other ways, but at the end of the day the process of "I think X, I wonder if it is true", the heart of the scientific method, can no sooner become obsolete than we can stop being human. The questions of What, Why and How are so fundamental to humans as humans that nothing short of total omniscience will ever replace the logical process represented by the scientific method.

  13. I agree, but... by wfolta · · Score: 3, Insightful

    What you say is true, Hoplite3. The big issue I see is how people define "model". My guess is that quite a few unfortunately define it as "I got 3 asterisks in the significance test", whether the "model" (say, linear regression) makes sense or not.

    I forget where I read it, but I've been studying linear regression, and there was a fascinating example were if they'd have used linear regression techniques on the early "drop the canonball and time it's fall" data, they would have come up with a nice, highly-significant linear regression for gravity.

    Then there is the whole issue of explanation versus prediction. Something can be predictive while providing no explanation, and perhaps that's where the petabyte idea is going: who cares about explanation if prediction is accurate enough? (Not my philosophy, BTW.)

    1. Re:I agree, but... by Hoplite3 · · Score: 4, Interesting

      Yes, I think that prediction without explanation is fascinating, but I don't know if it's what I like about science :) Have you ever heard Lenard Smith speak? I saw him at SAMSI, but his MSRI talk is online and is roughly the same. He's a statistician who works in exactly this.

      Some fancy-pants technique he has is better at predicting the future behavior of chaotic systems (like van der Pol circuits or the weather) than physical models. But he also points out that these predictions don't tell you what type of data to collect to make better predictions, and that they don't generalize. One nice "model" he has can predict the weather at Heathrow better than physical weather models (from the same inputs: wind speed, temperature, pressure, etc), but it's useless for predicting the weather in Kinshasa until the model is re-trained.

      I think these types of data analysis tools will be very important in the future, but they won't replace the explanatory power of models. Just like how scientific computing is useful, but never replaced actual experiments.

      --
      Use the Firehose to mod down Second Life stories!
    2. Re:I agree, but... by aurispector · · Score: 4, Insightful

      Thank you. Sure, there's a ton of data out there, but how was it collected? What statistical methods were used to analyze the data? How did you select the data set you're analyzing? Nothing I understand about science really applies to data mining a so-called "cloud". Prediction without explanation is just observation. Observation in and of itself is not science. You might have data, but is it the right data?

      I see all this petabyte stuff as interesting and even as a valuable adjunct to real science, but a basic requirement of science is reproducibility and you can't reproduce the data collection.

      --
      I have mod points. The reign of terror begins now.
  14. Rise of Engineering over Science? by starfire-1 · · Score: 5, Interesting

    I have always viewed this debate in the context of scientist vs. engineer. That is one who views data as "good and true" vs. "good enough". That's not a slam on engineers (I am one), but a reflection of the balance between the two. A scientist that never applies theory sits in an empty room. An engineer who build things with out science, sits in a cluttered room surrounded by useless objects.

    I do find interesting though that the advent of "google data" may indicate a flip in order of the two disciplines. Historically (IMHO) science has led engineering. A theoretical breakthrough, provable by the scientific method, may take years to give birth to a practical application. Now, with enormous piles of data and the knowledge that "good enough" is often good enough, we may be creating useful objects that will take science many years to explain and model.

    The biggest issue and omission in both of these pieces is that this "cloud" of data does not represent "truth" (as the scientist may seek), but rather a summation or averaging of the "perception of truth" as seen by the individual authors. The cloud, therefore, is only as useful as human's ability to divine truth without the scientific method.

    My two cents. :)

    1. Re:Rise of Engineering over Science? by maxume · · Score: 3, Insightful

      I have a theory that some of the best engineers are scientists, and some of the best scientists are engineers.

      Scientists often need to build crazy stuff to figure things out, and engineers often need to figure things out to build crazy stuff. Because they are each result oriented, they don't get hung up on the things that someone in field would.

      --
      Nerd rage is the funniest rage.
  15. knowledge != understanding by mlwmohawk · · Score: 3, Insightful

    I have a problem with the google generation, sure, they can parrot facts and find things in an instant, as can any slashdotter I'm sure, but knowing something is not the same thing as understanding something.

    I coworker asked me yesterday "how do you call a C++ class member function from C [or java]?" The question is an example of pure ignorance.

    If they "understood" computer science, as a profession, this would be a trivial question, like how do I or can I declare a C function in C++. The second question is what google can help you with while having to ask the first question means you are screwed and need to ask someone who understands what you do not. Not understanding what you do for a living is a problem.

    How programs get linked, how environments function, virtual machines vs pure binaries, etc. These are important parts of computer science, just as much as algorithms and structures. You have to have a WORKING knowledge of things, i.e. an understanding.

    Google's ease of discovery eliminates a lot of the understanding learned from research. Now we can get the information we want, easily, without actually understanding it. IMHO this is a very dangerous thing.

  16. Number one pet peeve with my doctor by bamwham · · Score: 2, Interesting

    He makes statements about treatments, causes, and outcomes as if they were God given truths proven to the world beyond all doubt. In truth medicine seems to this mathematician as a field governed sooley by statistical correlation with next to no concern over (a) what is the actual cause is, (b) testing the hypothesized cause in any meaningful way. I've read study after study that goes through a wonderful presented statistical analysis to conclude that such and such drug works well at treating such and such symptom; they then close with a couple of paragraphs as to why (they think) the drug is working often not using an qualifiers such as "we don't know but our guess is..." or "it would be nice to find out if it is ...."

    To the vast majority of practicing physicians I've met "cause" just doesn't seem to be the important question. Which I think is why things happen like my pharmacist declaring that two drugs prescribed by my doctor are going to cancel each others effects or why I take a drug to treat a painful toenail and end up with bleeding in my stomach.

    1. Re:Number one pet peeve with my doctor by ColdWetDog · · Score: 2, Interesting

      In truth medicine seems to this mathematician as a field governed sooley [sic] by statistical correlation with next to no concern over (a) what is the actual cause is, (b) testing the hypothesized cause in any meaningful way. I've read study after study that goes through a wonderful presented statistical analysis to conclude that such and such drug works well at treating such and such symptom; they then close with a couple of paragraphs as to why (they think) the drug is working often not using an qualifiers such as "we don't know but our guess is..." or "it would be nice to find out if it is ...."

      You are unfortunately quite correct and it's very frustrating. I speak as a physician with a strong background in experimental biology. MOST medical research is complete and utter garbage. Statistically correct garbage, but crap none the less. However, in defense of my current field - it's awfully hard to do "experiments" in human research. Hell, it was hard enough to do on eurkaryotic culture cells. Which is why much of the underpinning on modern biological sciences was done on "simple" organisms like bacteria and phages.

      Another, more empiric way of looking at what most of what medical science is doing comes from the realization that if you "cure" or "improve" a disease process, at some levels it makes no difference whether you understood what you're doing or just managed to get a valid correlation between treatment and effect. To use a previous example, when you taken a statin to reduce cholesterol, you (as the patient) don't do this to "lower your cholesterol" - you do it so you live longer / healthier / disease free. The statin -> reduce cholesterol correlation may have led researchers to the treatment regimen in the first place, but the end point is staying alive longer. Thus, if the actual mechanism for that is channeling his noodliness, the treatment still works.

      Of course, that's not science (or at least not very good science). But it IS the state of medical therapy.

      Biology is fiendishly complex and we, as usual, make lots of baby steps and stutters. However, anybody that thinks a doctor in the latter part of this century is going to look like back at 2010 medical practice and decide it's "butchery" is smoking some good stuff.

      --
      Faster! Faster! Faster would be better!
  17. science-open , clouds-? by GodWasAnAlien · · Score: 2, Insightful

    Science and openness go together.
    Without openness, we all are reinventing private wheels, which we destroy the plans to when there is no profit.
    If you work in software, consider for a moment how scientific your work is, considering the work of other companies doing similar work.

    This Clouds thing is the "billion monkeys/humans typing on keyboards" model.
    Yes, it really can work (with humans).
    But, as with science, the chaos development model only works with openness.

    Of course, organized science along with a little chaotic development work work even better.

    There are forces in our society that do not like any open model. The Microsoft's, the MPAA, the RIAA. These type of organization thrive from closed models. More copyright controls, more DRM, longer copyright and patent terms.
    These forces would prefer to own,control and close science and clouds of data. They are unaware of the inevitable impact of such actions.

    In a free capitalist society, we are naturally driven my contrary forces.
    A desire to hide discoveries, to maximize profits, even at the expense of innovation.
    A desire to share discoveries, to contribute to society and for credit.

    While it is possible to profit when ideas are shared,
    It is more difficult to contribute to society by hiding information indefinitely.

  18. Actually, He seems to support a weak version... by hjsolbrig · · Score: 2, Insightful

    While he does a good job showing that science itself isn't going away, he actually lends credence to the position that cloud computing implies a lot of useful information will be generated outside of science. Moreover, he also might be supporting the position that science isn't necessarily going to catch-up and explain this data any time soon. So, the "strong" position, that Google makes science irrelevant, is naturally false. But the "weak" position, that Google represents a new kind of inquiry that is going to be increasingly used and relevant, seems intact and supported. So cheers to Google and science, HJS

  19. Using big words to explain something simple by relguj9 · · Score: 2, Insightful

    I think the consensus is that the original article is a bit presumptuous and flawed. He says that science will be replaced, which implies that there is a hardened definition for how science is to be performed currently, which there isn't. There is no ONE definition of science or the scientific method.

    From a junior high school site about the scientific method:

    "Six steps of the S. M.
    State the problem: Why is that doing that? Or Why is this not working?
    Gather information: Research problem and get background info
    Form a hypothesis: a possible explanation for the problem using what you know and what you observe.
    Test the hypothesis: Make observations, build a model and relate to real-life or experiment.
    Experiment: testing the effects of one thing on another using controlled conditions.
    Variable: a quantity that can have more than a single value. (Dependent vs independent)
    Constant: a factor that does not change when other variables change.
    Control: the standard by which the test results can be compared
    Analyze data: recording data and organizing it into tables and graphs.
    Draw conclusions: based on your analysis of your data, you decide whether or not your hypothesis is supported."

    This "cloud" is just a buzz-word for massive amounts of data collected for no good reason other than to collect it, IE before you perform a hypothesis. Using this junior high model, a hypothesis is created from observation (seeing a correlation in the data), then you go back to the data or collect more data to prove or disprove that hypothesis.

    Massive amounts of data and algorithms that sift through it are TOOLS in the box for performing the scientific method. They don't replace it.

    I think his argument would be better if he stated that these tools, in certain cases, allow you to reasonably prove and create a hypothesis in a single step.

  20. Links need thought by FlyingBishop · · Score: 3, Interesting

    I had a nice example of the complete inadequacy of google's thought-agnostic approach to links browsing around looking for information on samba and fuse under linux. Google's ad bars, completely misinterpreting the context, offered links to fuse boxes, as in wiring, and Samba lessons, as in dancing. But then, maybe I'm not giving Google enough credit. It might have actually recognized the pointlessness of trying to market software to a Linux user, and took the obvious step of throwing in some complete non sequiturs in the hopes of catching something of value.

  21. It was an easy job, really. by Saint_Waldo · · Score: 2, Insightful

    "Because it came from WIRED," should have been enough reason to discard this bullshit from day one. Why not ask some REAL scientists in a REAL peer reviewed scientific journal about what the "cloud" is doing instead of letting a bunch of insular technophiles indulge in masturbatory fantasies about how their "culture jamming" is "shifting paradigms" all while convincing themselves the same shit wasn't going on in the 60's, 70's, 80's and fucking 90's, and is indeed the sort of thing that led to WIRED's kind in the first fucking place. If science and its titular method could both create and survive the atomic bomb, radar, TANG and LSD, it can certainly handle a fucking "cloud" of bits.

  22. Francis Galton and the Ox ... by frogzilla · · Score: 3, Informative

    Wasn't this all demonstrated 100 years ago by Francis Galton and an Ox? What's new is that there are more data points and better techniques to identify interesting correlations. Probably this is what we do internally anyway. All of our sensory input is correlated and the interesting bits are filtered out by specific algorithms trained by evolution. What is fascinating to many are the times when these algorithms are spectacularly wrong.