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War Over Arsenic Based Life

Antipater writes "Slashdot readers may remember the announcement and ensuing controversy six months ago over the NASA discovery of microbes that can supposedly incorporate arsenic into their DNA. Now, The Washington Post reports that Science has published a collection of eight scathing critiques of astrobiologist Felisa Wolfe-Simon, her methods, and her conclusions. Wolfe-Simon is starting to fire back and gather her own allies — one wonders if we're in for another cold-fusion style science war."

155 comments

  1. Can't we all just get allele? by AlienIntelligence · · Score: 1

    Fighting? Sigh... bruised egos? What?

    -AI

    --
    For me, it is far better to grasp the Universe as it really is than to persist in delusion
    1. Re:Can't we all just get allele? by statusbar · · Score: 1

      How does the "scientific method" apply here? Are all the scientists involved using the "Scientific Method?"

      --jeffk++

      --
      ipv6 is my vpn
    2. Re:Can't we all just get allele? by Black+Parrot · · Score: 1

      How does the "scientific method" apply here? Are all the scientists involved using the "Scientific Method?"

      That's the Short Form Scientific Method; it leaves out the part about lawyering up and trying to beat the other side to the first press release.

      --
      Sheesh, evil *and* a jerk. -- Jade
    3. Re:Can't we all just get allele? by flyneye · · Score: 1

      In this age of low scholastic standards who could even tell how equipped modern researchers are, after degreeing up in institutions where research dollars are given in ratio to the bias presented by the benefactors agenda?

      I wouldn't be surprised if they found a 3 headed purple fish in Mono Lake that eats Repubmocrats and pisses gasoline. This is California we are talking about.

      Does anyone expect anything but "scathing" reviews to appear in the press. Closed minded dipshits quotes make waaaaay better copy than in-depth, hard work coverage of some other scientist that may have some light of his own to shed on the situation.

      Either way, critics, are not "doers". Has a single one of the assholes tried to recreate the experiment? No, I'm just hearing speculation and regurgitation of crap they learned in school. You know, school, where this experiment was definitley not conducted and the science ethic is SOOOOOO high.

      If any actual science is advanced in the world it will come by accident or by lone wolf individuals who could give a crap less about their supposed peers lack of vision.

      --
      *Repent!Quit Your Job!Slack Off!The World Ends Tomorrow and You May Die!
  2. Scientific Method by NFN_NLN · · Score: 4, Insightful

    One of the basic principles of the scientific method is the ability for peers to independently reproduce results. If this is not the case, then this is not science.

    1. Re:Scientific Method by Spy+Handler · · Score: 0, Troll

      if that's the case then global warming is not a science.

    2. Re:Scientific Method by Anonymous Coward · · Score: 0

      That, or you are too ignorant of the science of global warming to know that you don't really have a point.

    3. Re:Scientific Method by Anonymous Coward · · Score: 1

      If that's the case, neither is String Theory.

    4. Re:Scientific Method by MightyMartian · · Score: 4, Informative

      Multiple teams have confirmed global warming. What are you talking about?

      --
      The world's burning. Moped Jesus spotted on I50. Details at 11.
    5. Re:Scientific Method by sumdumass · · Score: 2, Interesting

      It's easier to shoot the messenger then the message. But it's even easier to shoot the message then carry it on if you don't like change. Peer review has seemed to of went form, "Yes, we did it too", or "no, it didn't work for us", or even a "we saw something a bit different when we tried it", to an "I agree or disagree, let's take a vote on it". At least in some things anyways.

      While you are right, that's how science works and if it isn't working that way, it isn't science, but this non-science is happening within the science arena by people claiming to be scientists doing doing science. For a vast majority of people, what is real science or not will be subject to who has the loudest opinion similar to how history is always written by the victor.

      In other words, the vast majority of people will end up reading it in a text books somewhere based on who gave up for whatever reason last.

    6. Re:Scientific Method by Anonymous Coward · · Score: 2, Informative

      From the Washington Post article:

      "Further, Wolfe-Simon has provided samples of the supposedly arsenic-loving microbes to “four or five” independent scientists, she said, who are now trying to prove her wrong — or maybe just show that she was right."

      This looks to me the scientist is giving out samples of the said bacteria to other scientists to try reproducing the findings.

    7. Re:Scientific Method by Anonymous Coward · · Score: 0

      Climatology is field of science, global warming is a theory.

      duuuuhrrrr.

    8. Re:Scientific Method by Ruke · · Score: 4, Insightful

      In this case, it looks like Wolf-Simon published her results, and some peers fired off some immediate critiques of her methods, while others raised questions based off of what is already known of molecular biology. Wolf-Simon is responding to 8 of these criticisms in the latest publication of Science. As far as I can tell, no one has attempted (and succeeded or failed) to reproduce Wolf-Simon's results. There hasn't been a whole lot of time to do the necessary studies.

      As far as I can tell, this is science, as she is performed. You publish controversial/novel results, people immediately try to pick your results apart, and you respond to them. In an ideal world, everything would be done with the same level of rigor as these results are being handled, not just the "hard sciences".

    9. Re:Scientific Method by BadPirate · · Score: 1

      Oh really? http://www.ipcc.ch/pdf/IAC_report/IAC%20Report.pdf "Independent Judgment. When requested to provide advice on a particular issue, the IAC assembles an international panel of experts. Serving on a voluntary basis, panel members meet and review current, cutting-edge knowledge on the topic; and prepare a draft report on its findings, conclusions, and recommendations. All IAC draft reports undergo an intensive process of peer-review by other international experts. Only when the IAC Board is satisfied that feedback from the peer review has been thoughtfully considered and incorporated is a final report released to the requesting organization and the public. Every effort is made to ensure that IAC reports are free from any national or regional bias", But then again, THAT report was only signed by 2500 scientists...

      --
      - Holy crap, I've got MOD points! Who thought that was a good idea.
    10. Re:Scientific Method by DRJlaw · · Score: 5, Insightful

      One of the basic principles of the scientific method is the ability for peers to independently reproduce results. If this is not the case, then this is not science.

      You presume that the critics have attempted to independently reproduce the results. They have not. They are merely identifying potential sources of false positives. While the original team would be wise to explain how these potential sources of error were already addressed, and if necessary to run additional experiments addressing lapses or unconsidered factors, hypothetical arguments as to why an experiment cannot have worked do not prove that the results cannot be reproduced and/or are actually caused by other mechanisms.

      "The exchange does not put forth new data on the matter, but centers on the original experiments in which Wolfe-Simon isolated bacteria from arsenic-laden Mono Lake, California, and then tried to grow them in cultures with large amounts of arsenic and no phosphorus, which is typically required for growth."

      Nobody has tried to reproduce the result.

      "University of British Columbia microbiologist Rosie Redfield, the blogger most critical of Wolfe-Simon both personally and professionally, asserts in one of the Technical Comments that Wolfe-Simon did not go far enough in purifying DNA from GFAJ-1 before testing it for its arsenic components."

      Valid criticism, but not proof of irreproducability or alternate mechanism.

      Extraordinary claims require extraordinary proof. On the other hand, scientists claiming that things are impossible have routinely been proven wrong. Unless something is shown to violate well established laws, hypothetical criticism is usually far less valuable than actual experimentation and reproducible alternate explanation.

    11. Re:Scientific Method by Coldmoon · · Score: 1

      Get the wax out of your ears and listen to the music...oh the lovely music of the spheres...

      --
      Coldmoon over Dark water...
    12. Re:Scientific Method by Obfuscant · · Score: 1, Interesting
      Running the same code to get the same model results is not "duplicating scientific results". It's running the same program and getting the same output. Ditto for plotting the estimated average temperatures for the last 200 years. Running gnuplot or matlab on someone else's data and getting the same plot isn't science.

      Duplicating a scientific result would mean that you take the same starting conditions, do the same process, gather your own data, and get the same result -- with different objects. And it includes a control so that you know the result is due to what you change, not something you haven't taken into account. For cold fusion, it means taking the palladium (or was it Pt?) metal and making the electrodes and putting them into a different beaker and getting the same unexplained temperature rise. If you see that result, then you need to start eliminating alternative causes.

      For global warming, it means taking two different planet Earths, adding CO2 to one and not the other, and then measuring the temperatures. Can you show me the referreed journal article that describes that experiment being done even once, much less in a reproducable manner as required by the scientific method?

      But no, just observing a correlation in one set of data isn't a scientific experiment. Having two scientists look at one set of data and say "there is a correlation" doesn't mean there have been two experiments. It can lead to hypotheses that can be tested using experiments, but until then you haven't completed the scientific method.

    13. Re:Scientific Method by MightyMartian · · Score: 1

      Fortunately multiple groups using different methods have confirmed this. You're objection probably made sense fifteen years ago. Now, it's just anti-science FUD.

      --
      The world's burning. Moped Jesus spotted on I50. Details at 11.
    14. Re:Scientific Method by dmiller · · Score: 1

      It's a good thing we did that before banning ozone-depleting freons.

    15. Re:Scientific Method by empiricistrob · · Score: 3, Informative

      I'm so tired of people saying this -- if you can't replicate an experiment with the same starting conditions then it's not science -- that it total and complete bullshit.

      Science works like this:
      Step 1. Formulate a hypothesis.
      Step 2. Test the hypothesis.
      Step 3.
      If hypothesis checks out, repeat step 2. After sufficient iterations call it a theory.
      If hypothesis doesn't check out, throw it out and formulate a new hypothesis.

      *no where* in the above does it require you to have the same starting conditions. In the case of global warming the hypotheses are of the form "Higher levels of CO2 in the atmosphere will lead to higher temperatures". There are *many* ways you can test these hypotheses -- you don't need to have a model earth to play with.

    16. Re:Scientific Method by Mindcontrolled · · Score: 5, Informative

      Nice way of showing that you didn't remotely follow the science there. Protip: Watts is not part of it. There are multiple data sets, multiple models, a strong, controversial discussion about the building of said models - and still, a consensus on the basic facts, because they are bloody obvious by now. If you think reproducibility means "taking two different earths", you don't have the slightest grasp about what science actually is. This is actually so exceedingly dumb that i fail to grasp how someone can come up with that argument.

      --
      Ubi solitudinem faciunt, pacem appellant.
    17. Re:Scientific Method by geminidomino · · Score: 1

      *no where* in the above does it require you to have the same starting conditions.

      Not defending GP's erroneous claim (while I think there are legitimate criticisms of AGW as it's being fed to us, not having a "Control Earth" isn't one of them), but the point could be argued that, in many cases, step 2 would imply "under similar conditions" (since "exact same conditions" is nearly impossible even in a controlled experimental environment.)

    18. Re:Scientific Method by Mindcontrolled · · Score: 2

      Well, the fact that we never get identical conditions is covered by the theory of errors. Don't see how similar conditions are not present in climate science. The basic point is, after all, to make a prediction and see if it comes true. That's what is happening.

      --
      Ubi solitudinem faciunt, pacem appellant.
    19. Re:Scientific Method by empiricistrob · · Score: 2

      But what do you mean "under similar conditions"? Over interpreting "under similar conditions" is equivalent to throwing away induction.

      And if you're willing to throw away induction then we need to say goodbye to all of science. Past experiments show that apple's fall to the ground, but none of these experiments have been conducted in the year 2012. Therefore saying that apples will continue to fall to the ground in 2012 is an unscientific statement.

      I'm sorry, but I prefer all of the knowledge that science has gotten us, and that includes empiricism *and* inductive reasoning.

    20. Re:Scientific Method by NeutronCowboy · · Score: 3, Insightful

      blah blah scientific theory blah blah taking two different planet Earths blah blah reproducable manner blah blah scientific method blah blah

      You don't have a clue. You don't need a different planet to figure out that increasing CO2 concentrations in an air sample increases its absorption of IR wavelengths. Plenty of tests that can verify that.

      Your standard of what constitutes science is so ridiculously far out there that it would be impossible to figure anything out about anything that is bigger than a science lab. Thankfully, most scientists have figured out that lab experiments provide a nice basis with which to predict larger phenomena.

      And if you really think that that's the only way that discoveries can be made about planet-wide phenomena, please ignore weather reports, tsunami warnings, volcano warnings, earthquake reports, oil discovered through seismic evidence.... yeah, scientists who don't have a second earth to work with have really not contributed anything to society.

      --
      Those who can, do. Those who can't, sue.
    21. Re:Scientific Method by Anonymous Coward · · Score: 0

      Or that you're completely ignoring the entire basis (data) for questioning much of the "science" surrounding global warming.

    22. Re:Scientific Method by Mindcontrolled · · Score: 1

      Pretty much sums it up. I gotta ask, though - did you make your username just in the hope to get that post in one of these days? ;)

      --
      Ubi solitudinem faciunt, pacem appellant.
    23. Re:Scientific Method by Krokus · · Score: 0

      This conduct on the part of the science community is pretty non-scientific, IMHO. If you have doubts, attempt to reproduce the original results. In doing so, you will either reproduce them and if not, you may stumble upon scientific proof of precisely why the original experiment is flawed. If the original research stands to overturn a century of accepted theory, then you had *better* bloody well attempt to verify or contradict the original research using the *scientific method* instead of using 100 years of possibly flawed theory as a shield against new knowledge and insight. Personal attacks? Are you kidding me? Are these people children?

      Carl Sagan is turning in his grave.

    24. Re:Scientific Method by Mindcontrolled · · Score: 1

      Pretty much how it works. At this point, you do methodological criticism. Everyone gets hit with that - in most cases it doesn't get that public, though. That's the price you pay for doing press releases in that scope. I personally just got my publications ripped apart in pretty much closed conferences. Reproducing it comes later - establishing a system to work with weird extremophiles takes time. The tests for reproducibility will take a couple of months more and burn up some PhD candidates, as usual... Then we'll see.

      --
      Ubi solitudinem faciunt, pacem appellant.
    25. Re:Scientific Method by Mindcontrolled · · Score: 1

      You can be sure that they are trying to reproduce it - it just takes time. Establishing a completely new system takes not weeks but months or years and leaves some PhD candidates along the road. We'll see more definitive data next year or so.

      --
      Ubi solitudinem faciunt, pacem appellant.
    26. Re:Scientific Method by JayBean · · Score: 1

      Oh really? http://www.ipcc.ch/pdf/IAC_report/IAC%20Report.pdf

      "Independent Judgment. When requested to provide advice on a particular issue, the IAC assembles an
      international panel of experts. Serving on a voluntary basis, panel members meet and review current,
      cutting-edge knowledge on the topic; and prepare a draft report on its findings, conclusions, and
      recommendations. All IAC draft reports undergo an intensive process of peer-review by other
      international experts. Only when the IAC Board is satisfied that feedback from the peer review has been
      thoughtfully considered and incorporated is a final report released to the requesting organization and the
      public. Every effort is made to ensure that IAC reports are free from any national or regional bias",

      But then again, THAT report was only signed by 2500 scientists...

      Right, nothing ever gets past the IPCC...

      http://www.timesonline.co.uk/tol/news/environment/article6991177.ece

    27. Re:Scientific Method by i.am.delf · · Score: 1

      This whole affair is an example of peer review gone wrong. It is clear that Science in their haste to publish this article probably didn't do the best job of picking reviewers of this paper. Had they sent this article to even one critical reviewer, none of this would have happened. The paper would have been delayed for publication for a few months while the authors did some more rigorous experiments.

    28. Re:Scientific Method by GrumpySteen · · Score: 2

      Global warming isn't a science. Climatology is a science.

    29. Re:Scientific Method by i.am.delf · · Score: 2

      It is not even a matter of reproducible results. This whole affair is a logic exercise, the experiments performed cannot rule out other trivial explanations for the results. Science does not only require an experiment showing the plausibility of one explanation, but also the implausibility of alternative reasonable explanations.

    30. Re:Scientific Method by Mindcontrolled · · Score: 3, Interesting

      At this point, I would not conclude that anything is wrong with the original research - only that more experiments are needed. Pretty standard. No peer reviewer tries to reproduce experiments, usually. They just offer methodological criticism. And the criticism offered so far could pretty much be overcome by some discussion with the reviewer. The original research is not the strongest, but neither is the criticism. It is interesting enough stuff to publish it, if only to get the discussion going and more people interested in picking up the subject. I see no failure there. Business as usual.

      --
      Ubi solitudinem faciunt, pacem appellant.
    31. Re:Scientific Method by Black+Parrot · · Score: 1

      Running the same code to get the same model results is not "duplicating scientific results".

      I guess your code tells you that the world's glaciers aren't really melting.

      Maybe you weren't aware that we've got more evidence for global warming than someone's plot of historical temperatures.

      For global warming, it means taking two different planet Earths, adding CO2 to one and not the other, and then measuring the temperatures.

      You sound like a creationist: regular science is OK (and works), right up until it concludes something you don't like, and then you start demanding the impossible so you can convince yourself that regular science isn't really science, and your beliefs trump the evidence.

      --
      Sheesh, evil *and* a jerk. -- Jade
    32. Re:Scientific Method by Black+Parrot · · Score: 1

      You don't have a clue. You don't need a different planet to figure out that increasing CO2 concentrations in an air sample increases its absorption of IR wavelengths. Plenty of tests that can verify that.

      Data point: Arrhenius figured out the physics of greenhouse gasses a hundred years ago.

      But GWDs don't want to discuss mechanisms that are long established facts; they want to identify some model that they think they can cast doubts on.

      Very like creationist rhetoric, actually: Avoid the core issues, offer arguments where you think you can cause a few to doubt.

      --
      Sheesh, evil *and* a jerk. -- Jade
    33. Re:Scientific Method by Black+Parrot · · Score: 3, Interesting

      This conduct on the part of the science community is pretty non-scientific, IMHO. If you have doubts, attempt to reproduce the original results. In doing so, you will either reproduce them and if not, you may stumble upon scientific proof of precisely why the original experiment is flawed. If the original research stands to overturn a century of accepted theory, then you had *better* bloody well attempt to verify or contradict the original research using the *scientific method* instead of using 100 years of possibly flawed theory as a shield against new knowledge and insight. Personal attacks? Are you kidding me? Are these people children?

      Carl Sagan is turning in his grave.

      Peer review does not normally involve attempting to replicate someone's results. It involves reading carefully to see whether they did their homework, whether the (purported) observations support the claims, whether they forgot to take something important into account, etc.

      If you do publish something that is new or surprising, other researchers will jump all over it. But everyone has more to do than they can finish in one lifetime, so no one is going to run out and try to replicate results until some case has been made that they are plausible.

      You could waste lifetimes trying to reproduce results you have doubts about.

      --
      Sheesh, evil *and* a jerk. -- Jade
    34. Re:Scientific Method by Obfuscant · · Score: 1

      Well, the fact that we never get identical conditions is covered by the theory of errors. Don't see how similar conditions are not present in climate science. The basic point is, after all, to make a prediction and see if it comes true. That's what is happening.

      While the basic point may be "to make a prediction and see if it comes true", part of that prediction has to be the null hypothesis if you are going to do real science. That's the part that is NOT happening.

      It's really easy to predict that "if Mindcontrolled is alive on this planet the temperatures will go up" and gosh, look it came true! Using current global climate change science, I've just proven that YOU are the cause of global warming, and all we need to do is get rid of you to solve the problem.

      The real scientist has to be able to predict "if Mindcontrolled IS NOT alive on this planet the temperatures will not go up" and see if THAT comes true. Now, if you want to donate yourself to science, that would be great. I've done my part by predicting that you are the cause of global warming, please do your part by disproving that hypothesis. In fact, either way, you die -- either because we all get rid of you as a result of my proof of your involvement, or you get rid of yourself to prove you aren't the cause. It's a no win situation for you, but not so bad for the rest of us. Kind of like the problem we face trying to get rid of CO2. Pretty bad for those who produce CO2, not so bad for the people and countries that don't have large outputs.

      If you want an automobile analogy, try this. A remote tribesman is introduced to an automobile. He gets in, turns the key, and the radio starts playing. He puts it in gear and it goes. His hypothesis: the radio has to be on for the car to go. That's trivial to disprove. Simply turn the radio off. Car still goes. (Not an unrealistic hypothesis. I once had a car that ran great only when the headlights were on. It had been miswired so that some engine controls were connected to the lights. ) Now, show me the experiment where we remove all the CO2 from the atmosphere and the temperature doesn't go up. That's a critical part of "testing the hypothesis" that is not possible.

      Yes, the small differences in initial conditions for real scientific experiments can often be dealt with by treating them as errors. But to try to pretend that you can go from a sealed three foot box sitting on your lab bench all the way up to an unenclosed 8000 mile diameter sphere and treat it under the "theory of errors" is just ludicrous.

    35. Re:Scientific Method by Mindcontrolled · · Score: 1

      You are aware that there is not only a statistical connection between CO2 concentration and temperature, but also a physical mechanism that you can test in the laboratory? In your analogy - the tribesman actually took a look at the wiring of the car and found that the radio is not wired into the starter circuit? I can measure the IR spectrum of CO2, actually, I, personally DID measure it. Physical chemistry lab II, back then, before the war. We also know the mechanism of radiation equilibria. As to the Mindcontrolled causes global warming hypothesis - first, you cannot propose any mechanism. Second, you cannot deliver any correlation - global warming started before I was born. So, you have no grounds to propose this hypothesis on at all. Dismissed. Try harder.

      --
      Ubi solitudinem faciunt, pacem appellant.
    36. Re:Scientific Method by Obfuscant · · Score: 1

      You don't have a clue. You don't need a different planet to figure out that increasing CO2 concentrations in an air sample increases its absorption of IR wavelengths. Plenty of tests that can verify that.

      If all the entire earth/atmosphere/ocean/sun system is to you is "an air sample with some CO2 in it", then you've missed the point entirely and there is nothing I can say that will make any difference to you.

      People who oversimplify a complicated system so they can understand a small part of it often get it wrong on the larger scale.

      yeah, scientists who don't have a second earth to work with have really not contributed anything to society.

      The people who blather such ridiculously twisted interpretations of what someone else has said are the ones who fail to contribute. You'll find nothing like what you said in anything I've ever written.

    37. Re:Scientific Method by TapeCutter · · Score: 3, Interesting

      For global warming, it means taking two different planet Earths, adding CO2 to one and not the other, and then measuring the temperatures. Can you show me the referreed journal article that describes that experiment being done even once, much less in a reproducable manner as required by the scientific method?

      So according to your logic, Newton was just bullshitting when he said the Moon causes the tides because he did not have a control version of the Earth, not only that but every scientist since the 1600's has unquestioningly swallowed Newton's unscientific theory about tides.

      But even if your "logic" made sense, it is moot since there are many independent data sets, and there is a physical explaination that you can test yourself with some cheap lab equipment. If the physical explaination is wrong then it means spectroscopy is wrong, which in turn means much of quantum mechanics is wrong, astronomy is wrong, ect. And if you really want to look at other planets (as climate scientists such as Hannsen already have), then please explain to us why the surface of Venus, (AKA our sister planet), is hot enough to melt lead.

      The other major faw in your post, is that you don't seem to realise the physics came first (Fourier 1824), then the prediction of AGW based on the physics came in the 1890's, then strong evidence of increased CO2 forcing was found in the temprature records in the late 50's. Then computer models started making many other predictions about the effect of increased CO2 such as polar amplification and stratospheric cooling that have since been confirmed by observations.

      I put it to you that you are acting no differently to a creationist when you choose to denigrate an entire branch of science based on ill informed assumptions and your own personal definition of the scientific method, or perhaps your just further evidence of the Dunning-Kruger effect.

      --
      And did you exchange a walk on part in the war for a lead role in a cage? - Pink Floyd.
    38. Re:Scientific Method by Obfuscant · · Score: 1

      You sound like a creationist: regular science is OK (and works), right up until it concludes something you don't like,

      I'll point this out just once and then let you ramble on. I neither like nor dislike the conclusions coming out of "global climate science", I merely accept them as hypotheses that are not truly tested to the degree science demands. I have no problem with a scientist who says "I think" or "we believe". What I dislike are the "scientists" who claim "it is proven, there is no further debate necessary."

      Now please proceed with your rants about things I didn't say. Knock yourself out. Keep throwing in a personal insult to two when it makes you feel better about yourself.

    39. Re:Scientific Method by Anonymous Coward · · Score: 0

      Extraordinary claims require extraordinary proof. On the other hand, scientists claiming that things are impossible have routinely been proven wrong. Unless something is shown to violate well established laws, hypothetical criticism is usually far less valuable than actual experimentation and reproducible alternate explanation.

      Except that many of the criticisms are perfectly valid and, to use a phrase often applied to a different debate, the burden of proof is on the believer.

      It doesn't matter whether criticisms are hypothetical if they are reasonable. The scientific method dictates that you have a hypothesis and a null hypothesis, and that you do experiments which, all being well, allow you to reject the null hypotheses until only the hypothesis seems reasonable. The null hypothesis here is that the bacteria don't use arsenic/still use phosphorus. Their own supplementary information shows their "phosphorus-free" culture medium could have as much as 3.7 uM phosphate present. I don't work with arsenic, but I do work with marine bacteria in phosphorus-starvation conditions, and I have bacteria which show comparable amounts of growth at corresponding time points with around 8 uM phosphate in the medium. Who is to say that the "arsenic bacterium" hasn't just developed a super-efficient P scavenging technique? Well, there is other data in their paper which supports their hypothesis, but that also seems to have been called into question by other researchers.

      True, hypothetical criticisms aren't as valid as conflicting experimental evidence, but that doesn't mean you can ignore them. The point in science is that you collect experimental evidence up to the point where only the hypothesis seems to be a reasonable explanation of the observations, and I don't think they've quite hit that point yet.

    40. Re:Scientific Method by Anonymous Coward · · Score: 0

      "University of British Columbia microbiologist Rosie Redfield, the blogger most critical of [fellow female scientist, Felisa] Wolfe-Simon both personally and professionally...

      Everything is always personal when women are involved. This is evident in all areas of life, not just science.

    41. Re:Scientific Method by icebraining · · Score: 1

      So what you're saying is that we need to do what defenders of AGW are saying we should do - cut back significantly on CO2 production - in order to test for the validity of the hypothesis?

    42. Re:Scientific Method by geminidomino · · Score: 1

      I think you're the one over-interpreting it. :)

      By "Under Similar Conditions" I mean, for example, two sealed test chambers, one for the "control" and one for the "experimental." Even if designed, engineered, and built to identical specifications, the "universal human imperfection law[0]" says that there is going to be *some* difference between the two chambers, no matter how small.

      [0] Metaphorical and not a real law, though it totally should be. :)

    43. Re:Scientific Method by Anonymous Coward · · Score: 0

      Plus, a mechanism that can be seen/measured on a "Control Earth": Venus, which is much hotter than Mercury, even though Mercury is much closer to the source of heat for both worlds. Or would Earth be the "Control Venus"? : |

    44. Re:Scientific Method by Obfuscant · · Score: 2, Interesting

      You are aware that there is not only a statistical connection between CO2 concentration and temperature, but also a physical mechanism that you can test in the laboratory?

      I'll take it from this question that you disagree with my proven hypothesis that you are the cause?

      Yes, I am well aware that in the laboratory you can prove quite a lot of things. What you cannot do in the laboratory is test all of the competing and counteracting systems involved in something as large as the earth. A three foot sealed box in the lab does not map well into an experimental domain as large as the planet.

      In your analogy - the tribesman actually took a look at the wiring of the car and found that the radio is not wired into the starter circuit?

      He didn't have to. It was trivial to fully test the hypothesis that the radio had to be on for the car to run. Simply turn it off. Being able to do that is a critical part of proving or disproving the hypothesis that "radio must be on for car to run", just as being able to measure any potential temperature rise is a critical part of proving that CO2 is the cause of global warming. Simply saying that "I see no possible connection between the radio and the other operations of the car" isn't proof, and could easily be overlooking any of a number of things, some of which you have no idea exist. E.g., if you have no idea what a CAN bus is and that the radio may be connected to one that communicates with the car's computer, and that there may be a computer bug that includes "radio on" as part of the starting sequence, you'd spend a year looking at the wiring and not see what was wrong. The only way to truly test your hypothesis is to perform the control experiment. Does the car start with the radio off?

      I can measure the IR spectrum of CO2, actually, I, personally DID measure it. Physical chemistry lab II, back then, before the war.

      I've run IR spectrometers a few times, myself. Very nice rotational and vibrational lines from CO2. But that does not prove a hypothesis that "increased CO2 concentration in the upper atmosphere will cause increased temperatures". That's only one tiny part of an immense system.

      If you think we know everything there is to know about the earth/air/ocean/sun system, then we're wasting our time doing further research, right? If you want to claim that there is no other possible mechanism for any observed global warming than CO2 trapping IR, then you must know what all possible mechanisms are, and all possible counteracting mechanisms that would balance that effect.

      As to the Mindcontrolled causes global warming hypothesis - first, you cannot propose any mechanism.

      Of course I can. You gave me the mechanism. You emit CO2. You also emit infrared radiation. There has to be something special about your CO2 emissions, just like there is something special about anthropogenic CO2 that makes it the cause and not any of the other CO2 sources on the planet.

      Second, you cannot deliver any correlation - global warming started before I was born.

      1. So your parents are also to blame.

      2. It has gotten worse since you were born. We're in the upward part of the "tricky" hockey-stick, you know.

      3. I predict it will go critical if you live another year. Are you really telling me you'd risk the entire planet just so you can keep reading /.?

      Please step into the disintigrator chamber, it is the only way to protect the planet and all of the life (other than yours) thereon. If you don't, the other side will start sending real bombs and all kinds of bad things will happen. The needs of the many outweigh the needs of the one, don'tcha know? Please don't make me come up with even more ST references.

    45. Re:Scientific Method by BergZ · · Score: 1

      Scientists have never, in a laboratory, observed a strain of single cellular organisms gradually mutating into a complex multi-cellular animal.
      Does that mean you consider Evolution to be "not truly tested to the degree science demands" too?

      --
      Warning: This sig is not thread safe. For more information see Slashdot's sig policy.
    46. Re:Scientific Method by Anonymous Coward · · Score: 0

      As far as we know, the existence of the universe is a single, once ever event.
      As such, peers can not independently reproduce the result.
      Scientifically the universe does not exist.
      And of course, science itself can't exist then.
      You can't exist, either.

    47. Re:Scientific Method by rrohbeck · · Score: 1

      Peer review has seemed to of went form

      Syntax error: Doesn't parse.

    48. Re:Scientific Method by nobodie · · Score: 1

      Hmmm, Yes, but. I worked as a translator/ editor/ friend of a Chinese researcher who was studying a particular heart defect. In order to even begin the research he first had to engineer/ hybridize/ create/ breed a race of mice that had the heart defect. He was in a race with (as I recall, this was 15 years ago) 4 other research groups in different universities to create the mice and begin the actual research.

      He succeeded before the other and created the mice, but no one else in the lab was able to recreate the work, even under his supervision. He could repeat it, but they couldn't and other research groups finally bought the mice from our university.

      It was not reproducible, he got a PhD based on his work creating the mice breed. From what I have heard since then, there are other, similar situations in modern science. It is not that it is not reproducible, it is incontrovertible, the mice exist, there is no other way to create them except to succeed at creating them, even if no one else can. The scientific method was basic to the entire process, but...

      --
      Subversion of spatial scale luxury decoration ideas.
    49. Re:Scientific Method by Black+Parrot · · Score: 1

      I'll point this out just once

      Smart decision. Smarter yet would have been to just point it out zero times.

      If you were half as interested in learning how science really works as you are in having an excuse for rejecting aspects of reality that you don't like, you could make a long, long, long list of things that scientists study rigorously, despite not being able to reproduce them in the laboratory.

      By your rules, plate tectonics, earthquakes, volcanoes, glaciers, ice ages, meteor impacts, planets, moons, stars, galaxies, the big bang, black holes, etc. are just conjectures, because nobody produces them via repeatable experiments in the laboratory.

      --
      Sheesh, evil *and* a jerk. -- Jade
    50. Re:Scientific Method by interkin3tic · · Score: 1

      One of the basic principles of the scientific method is the ability for peers to independently reproduce results. If this is not the case, then this is not science.

      if that's the case then global warming is not a science.

      Global warming is a science and can, in fact, be tested and proven independently. The issue is that most of us would rather we not prove it a first time here on Earth, let alone create another Earth and test it twice.

    51. Re:Scientific Method by interkin3tic · · Score: 0

      This conduct on the part of the science community is pretty non-scientific, IMHO. If you have doubts, attempt to reproduce the original results.

      Problem: money. The people who control the purse strings are loath to fund basic research in the first place. Come up with a marketable treatment for impotence and they'll shower you with money, but if you want to look for exotic life forms in harsh environments, and you'll get a lot of rejections and little money

      Funding purely to -repeat- basic research experiments that have already been done does not exist. Even if you come up with a valid NEW reason to repeat the experiments, the people reviewing your grant are likely to give it lower importance than experiments which are equally scientifically sound and HAVEN'T already been done.

      If basic research were funded as well as we fund the military, then you'd probably see more results independently verified faster, but as such, it's not a high priority funding wise, so it does not happen very fast.

    52. Re:Scientific Method by Mindcontrolled · · Score: 1

      There is a point where you should realize that the hole you dug yourself into is deep enough by now. Strawmen over strawmen. Where do I say we know everything? That's right. Nowhere. And if you seriously deny CO2 trapping IR as the main mechanism of the greenhouse effect, then please explain to me why the radiation equilibrium between incoming sunlight and outgoing blackbody radiation puts the global average temperature at about 20K less than observed when you do not take CO2 into account. As for your "hypothesis" - come on. I don't really need to answer there. There is nothing special about anthropogenic CO2. You just made up another strawman. Other sources are taken into account.

      --
      Ubi solitudinem faciunt, pacem appellant.
    53. Re:Scientific Method by owski · · Score: 1

      Data point: Arrhenius figured out the physics of greenhouse gasses a hundred years ago.

      That's not in dispute. Only a few crackpots deny that extra CO2 won't lead to any more heat capture.

      What is in dispute is that ~1 degree of warming from doubled CO2 leads to as much as 6 degrees of warming from feedbacks. What's also in dispute is the nature and magnitude of the effects from that warming.

      There's a lot of good science in there, but it's far from "settled".

    54. Re:Scientific Method by Zorpheus · · Score: 1

      Yes but as someone working in physics I also have my doubt in their modelling of the whole planet Earth. In physics we develop theoretical models trying to reproduce experimental results. Often these models re wrong, and have to be adapted to better fit the experimental results. And these are much more primitive models than one describing the whole Earth. I can't imagine how long it would take to prove that such a model really resembles reality. And I don't know, did they ever go through this, by simulating real states of the planet and comparing the development in the model to that in reality? How could you do that in a satisfying manner?
      The earth seems way too complex to me to really model it. It is an unstable chaotic system, with lots of processes emphasizing and others counteracting changes. This can easily be simulated wrong.
      But of course the absorption of CO2 is a simple measurable fact. It is obvious that this will cause changes to the climate, and that we should be wary about this. I just say that I don't believe that we can predict the resulting changes.

    55. Re:Scientific Method by angel'o'sphere · · Score: 1

      one wonders if we're in for another cold-fusion style science war."

      Unlike cold fusion, in this case Felisa Wolfe-Simon only needs to show the bacteria to others. Then you extract the DNA and examine it in a mass spectrometer ... super simple, nothing to argue about.

      angel'o'sphere

      --
      Cost free eBook I read (by iBook/Kobo/Amazon/ObookO/Gutenberg etc.): "The Green Odyssey" by Philip Jose Farmer.
    56. Re:Scientific Method by angel'o'sphere · · Score: 1

      For global warming, it means taking two different planet Earths, adding CO2 to one and not the other, and then measuring the temperatures. Can you show me the referreed journal article that describes that experiment being done even once, much less in a reproducable manner as required by the scientific method?

      I dissagree:
      first of all, we know that CO2 is a greenhouse gas. So it should be completely logical that an increase of CO2 concentration leads to an increase of the overall temperature. Nevertheless you are free to test that.
      Second, you can as well make such test in a more controlled environment instead of needing a second earth ;D E.g. a large air tight terrarium might be sufficient. OTOH the atmosphere and the hight of the CO2 molecules might do a difference, so perhaps you need various terrariums in various hights over sea level.

      Having two scientists look at one set of data and say "there is a correlation" doesn't mean there have been two experiments.

      True. However if the second one looking over it says: the first one made a mistake here pointing to the error then such an approach might still be helpful.

      angel'o'sphere

      --
      Cost free eBook I read (by iBook/Kobo/Amazon/ObookO/Gutenberg etc.): "The Green Odyssey" by Philip Jose Farmer.
    57. Re:Scientific Method by mapkinase · · Score: 1

      I find it interesting that both email addresses given on that response are on gmail domain.

      http://www.sciencemag.org/content/early/2011/05/26/science.1202098.full.pdf

      I she afraid she will be fired?

      --
      I do not believe in karma. "Funny"=-6. Do good and forbid evil. Yours, Oft-Offtopic Flamebaiting Troll.
    58. Re:Scientific Method by mapkinase · · Score: 2

      "so no one is going to run out and try to replicate results "

      I would. That's why I am no longer doing science: nobody will pay you to replicate somebody else's result.

      --
      I do not believe in karma. "Funny"=-6. Do good and forbid evil. Yours, Oft-Offtopic Flamebaiting Troll.
    59. Re:Scientific Method by angel'o'sphere · · Score: 1

      I've run IR spectrometers a few times, myself. Very nice rotational and vibrational lines from CO2. But that does not prove a hypothesis that "increased CO2 concentration in the upper atmosphere will cause increased temperatures". That's only one tiny part of an immense system.

      Of course it does! What else would you conclude from it? An increase of gravity causes a stone to accelerate faster (to fall faster). For that you don't need experiments. If you had physics in school, you KNOW that.

      If you think we know everything there is to know about the earth/air/ocean/sun system, then we're wasting our time doing further research, right? If you want to claim that there is no other possible mechanism for any observed global warming than CO2 trapping IR, then you must know what all possible mechanisms are, and all possible counteracting mechanisms that would balance that effect.

      No, you don't need to know all possible things about the earth/air/ocean/sun system as this only affects the amount of temperature increase and not the fact that it is happening.

      So, how does it basically work?
      Sun beams on earth, this warms the earth.
      Earth radiates heat into space, this cools the earth.
      There is nothing more involved in the earth temperature. Claiming there would be, is idiotic.

      How can this basic model be parameterized and "manipulated"?

      1) increase or decrease sun radiation hitting the earth
      2) increase or decrease the heat radiation of the earth

      About 1) we have no influence, we can only observe. We observe that the last -60 to -10 years the sun did nothing special, it just cycled to its various solar cycles. However the last 10 years the sun seems to be stuck in a low energy point of their cycles. In other words: earth should be cooling since a few years if we only take into account the sun.

      About 2) we can make a list of things that lead to an increase temperature (decreased heat radiation or higher absorption) and a list of things that lead to a decrease (increased heat radiation, or less absorption).
      Increase: less ice, less reflections of sun, more absorption; less clouds, less reflections of sun, more absorption; less woods, more absorption in "desert / savana like" areas ... as you see there are no direct effects that directly increase the temperature. There are only ways to increase the warming effect of the sun.
      Vulcano eruption can indirectly lead to an increase as it can emit CO2.

      decrease: there is no direct effect to decrease the temperature, just like increase we can only help: increase ice caps, more reflection, less absorption; increase cloud amount, more reflection, less absorption; increase size/amount of woods or decrease deserts/savanas size, less absorption; volcano eruptions with large aerosol exhaust (but again they don't effect temperature directly, it goes either via cloud creation or reflection/absorption of sun light or via change of IR trapping abilities).

      Anyway, your argumentation is like sitting in a bath tube in warm water. You have 4 taps to get water into the tube. One with cold water, and three with various sizes and various temperatures of hot water. And now you ask: we have to test all combinations of hot water tabs to be sure every combination causes a temperature increase of the water in the tube. Sorry, if you are so "stupid" to think that, then go ahead and test it. Everyone with a clear mind knows it does not matter which tab is openend, how many tabs are opened and how far they are opened, there will always be a temperature increase. (Just like with CO2 ... it does not matter what you think what should be tested ... the only question is: where does it come from (only humans? also vulcanos?) and where does it go to (can we find [natural] mechanisms that could lower it? Will it go away by itself if we stop producing it right now?).
      The big questions

      --
      Cost free eBook I read (by iBook/Kobo/Amazon/ObookO/Gutenberg etc.): "The Green Odyssey" by Philip Jose Farmer.
    60. Re:Scientific Method by RockDoctor · · Score: 1

      if that's the case then global warming is not a science.

      Which planet did you carry out your experiments on?

      (There are some experiments that can't be carried out because we don't have the tools ; there are some that can't be done because we don't have the environments (like this one) ; and there are some that we don't have the materials for (e.g. determining which would have won in a Tyrannosaurus vs Giganotosaurus contest). At which point, you have to use modelling. Unless you've got a spare planet in your back pocket.)

      --
      Birds are not dinosaur descendants;birds are dinosaurs, for all useful meanings of "birds", "are" and "dinosaurs"
    61. Re:Scientific Method by budgenator · · Score: 1

      I'm so tired of people saying this -- if you can't replicate an experiment with the same starting conditions then it's not science -- that it total and complete bullshit.
      Science works like this:
      Step 1. Formulate a hypothesis.
      Step 2. Test the hypothesis.
      Step 3.
      If hypothesis checks out, repeat step 2. After sufficient iterations call it a theory.
      If hypothesis doesn't check out, throw it out and formulate a new hypothesis.

      Isn't the repeat step 2, replicating the experiment? The real technique in the climate models testing is actually called backcasting, they set the models to the initial conditions of lets say 1980 run through 30 years of model run then the results should be about what we have today, that's why paleoclimatetology is so hotly debated, and especially why how the thermometer records are adjusted is almost enough to start a shooting war.

      --
      Apocalypse Cancelled, Sorry, No Ticket Refunds
    62. Re:Scientific Method by radtea · · Score: 1

      For global warming, it means taking two different planet Earths...

      Err, no. What you are describing is some kind of rationalist/skeptic myth of science, not science as it has been done for the past three hundred years. Not the science that has explained the motion of the wandering stars and the tides, built flying machines and novel power plants, taken us to the Moon and back.

      Universal gravitation does not meet your criteria. "Sorry, Mr Newton. You have to take two masses, one with inertia, one without, and compare their gravitational attraction. Otherwise you aren't testing your hypothesis that resistance to motion and the force of attraction are strictly proportional, as your theory requires."

      All of astrophysics, most of geology and geophysics and vast tracts of biology are not science according to you. It is remarkably difficult to get a star, a planet or a species into the average sized laboratory, given university budgets these days.

      Science is the discipline of testing ideas--and their rigorously (often mathematically) worked out logical consequences--by systematic observation and controlled experiment.

      Climate science is definitely science, albeit of a highly politicized kind, and has less rigor than one might ideally want, which is a necessary consequence of letting people who are not computational or experimental physicists work on problems of computational and experimental physics.

      --
      Blasphemy is a human right. Blasphemophobia kills.
    63. Re:Scientific Method by budgenator · · Score: 1

      Even the most rabid AGW modeler supplicated at the alter of Gaia the CO2 is a minor player that only causes minor warming a some humidity increase and it's the amplification the cause by the increased water vapor that does the heavy lifting in AGW models.

      --
      Apocalypse Cancelled, Sorry, No Ticket Refunds
    64. Re:Scientific Method by jbengt · · Score: 1

      Science works like this:
      Step 1. Formulate a hypothesis.
      Step 2. Test the hypothesis.
      Step 3.
      If hypothesis checks out, repeat step 2. After sufficient iterations call it a theory.
      If hypothesis doesn't check out, throw it out and formulate a new hypothesis.

      Isn't it more accurate to say

      Science works like this:
      Step 1. Develop a theory based on what you know so far.
      Step 2. Formulate a hypothesis that would be true of the theory is valid and/or would be false if the theory is not valid (or vice-versa).
      Step 3. Test the hypothesis.
      Step 4a. If hypothesis checks out, repeat step 2.
      After sufficient successful iterations call it an established theory.
      Step 4b. If hypothesis doesn't check out, modify the theory and go back to step 2.
      If that doesn't pan out after sufficient attempts, throw out the theory.

    65. Re:Scientific Method by sycodon · · Score: 1

      Quote by Ottmar Edenhoffer, high level UN-IPCC official: "We redistribute de facto the world's wealth by climate policy...Basically it's a big mistake to discuss climate policy separately from the major themes of globalization...One has to free oneself from the illusion that international climate policy is environmental policy. This has almost nothing to do with environmental policy anymore."

      Quote by Club of Rome: "In searching for a new enemy to unite us, we came up with the idea that pollution, the threat of global warming, water shortages, famine and the like would fit the bill....All these dangers are caused by human intervention....and thus the “real enemy, then, is humanity itself....believe humanity requires a common motivation, namely a common adversary in order to realize world government. It does not matter if this common enemy is “a real one or.one invented for the purpose."

      Quote by emeritus professor Daniel Botkin: "The only way to get our society to truly change is to frighten people with the possibility of a catastrophe."

      --
      When Fascism comes to America, it will call itself Anti-Fascism, and tell you to give up your guns.
    66. Re:Scientific Method by sycodon · · Score: 2

      The problem is that the defenders of AGW are saying we should cut back on CO2 emissions through a complex scheme of geo-political government control of people's activities. In effect, creating a world government:

      Quote by Ottmar Edenhoffer, high level UN-IPCC official: "We redistribute de facto the world's wealth by climate policy...Basically it's a big mistake to discuss climate policy separately from the major themes of globalization...One has to free oneself from the illusion that international climate policy is environmental policy. This has almost nothing to do with environmental policy anymore."

      Quote by Club of Rome: "In searching for a new enemy to unite us, we came up with the idea that pollution, the threat of global warming, water shortages, famine and the like would fit the bill....All these dangers are caused by human intervention....and thus the “real enemy, then, is humanity itself....believe humanity requires a common motivation, namely a common adversary in order to realize world government. It does not matter if this common enemy is “a real one or.one invented for the purpose."

      Quote by emeritus professor Daniel Botkin: "The only way to get our society to truly change is to frighten people with the possibility of a catastrophe."

      --
      When Fascism comes to America, it will call itself Anti-Fascism, and tell you to give up your guns.
    67. Re:Scientific Method by Khyber · · Score: 1

      "Multiple teams have confirmed global warming."

      Ice core data has been found to be wildly inaccurate because of new fluid dynamics uncovered. That throws out a HUGE amount of 'history' and forces everyone back to the drawing board.

      So no, there's no confirmation at all.

      --
      Still waiting on Serviscope_minor to wake up to fucking reality and realize that Jessica Price isn't going to fuck him.
    68. Re:Scientific Method by Khyber · · Score: 1

      Ice core data got ruled out just recently.

      What's the next thing we're going to claim to understand and find out that we're entirely wrong?

      --
      Still waiting on Serviscope_minor to wake up to fucking reality and realize that Jessica Price isn't going to fuck him.
    69. Re:Scientific Method by dougmc · · Score: 1

      Isn't it more accurate to say

      Yes, that is more accurate. And an even longer, more accurate description could be come up with as well.

      But scientists don't sit around figuring out ways to apply the scientific method -- it's a general guideline, not a flowchart, but their work (at least good science, that is) tends to fall into the same general flow.

      Bad science, that's another matter entirely. There, people seem to start with a proposal -- "I want to show that X is true" and then cherry pick their data to do so. Unfortunately, this seems to be the method used by governments and corporations ... "I want to show that global warming isn't happening" or "I want to show that my new drug is effective with no side effects".

    70. Re:Scientific Method by Patch86 · · Score: 1

      On the contrary, this is peer review in action.

      First someone publishes.
      Then their peers (other scientists) read the study and critique it. Some criticism will be sent direct to the authors, others will be published.
      The author reads the criticisms and responds, hoping to address the critics' concerns and shore up support for their article.
      IF they can't address the criticisms, the study is abandoned.
      IF they do manage to keep their study in good repute, it becomes a valid part of the scientific canon- and other researchers will try to replicate, disprove, or build on it experimentally (as is scientific BAU).

      Personal attacks are obviously out of order, but alas, trolls and jerks exist in every walk of life. If you work in a place where there's not a single mouthy, tiresome arsehole then you're a very lucky person.

    71. Re:Scientific Method by Burnhard · · Score: 1

      I don't know how many times I have to say this; perhaps people like you will one day get the message: running a model is not the same as performing an experiment. If all models have the same bias, then you cannot claim they are correct just because they come to a consensus.

    72. Re:Scientific Method by Burnhard · · Score: 1

      Yes, and as you know the doubling of CO2 should produce approximately 1C of warming. All of the rest, including your stupid link to "realclimate" (a marketing site for discredited activist scientists like Michael Mann), is conjecture based on no evidence whatsoever.

    73. Re:Scientific Method by Mindcontrolled · · Score: 0

      Ah, Burnhard, my favourite climate troll is still around. How's the brain, mate? Grown a second neuron by now?

      --
      Ubi solitudinem faciunt, pacem appellant.
    74. Re:Scientific Method by Anonymous Coward · · Score: 0

      The timing was all wrong for this 'discovery' as it followed comments critical of NASA to bring about any scientific discovery at all for the money.. Does anyone remember those criticisms?

    75. Re:Scientific Method by Rich0 · · Score: 1

      The other thing is that nobody gets a PhD for confirming somebody else's work. You could get one for refuting it and learning something new, or by extending work.

      So, I doubt a lot of effort is going into merely reproducing the experiments unless it is just a precursor to more.

    76. Re:Scientific Method by Anonymous Coward · · Score: 0

      That's a huge, blanket statement. I see information about the outer portions of an ice core being unreliable (something I'd always just assumed), but nothing about them being an unusable tool in general. Is there a source on this?

    77. Re:Scientific Method by TapeCutter · · Score: 1

      Thanks Burnhard, I know I have made a salient point when you turn up to troll me. Any success with your stated desire for the anti-AGW propogandists to pay you for your efforts?

      --
      And did you exchange a walk on part in the war for a lead role in a cage? - Pink Floyd.
    78. Re:Scientific Method by Khyber · · Score: 1

      This was covered in a /. story within the past two weeks. new fluid dynamics showed that the core data we were using was unreliable because the lower layer was still in motion during the freeze.

      The source is in this site, I don't bookmark everything.

      --
      Still waiting on Serviscope_minor to wake up to fucking reality and realize that Jessica Price isn't going to fuck him.
    79. Re:Scientific Method by Patch86 · · Score: 1

      That's what students are for, surely?

    80. Re:Scientific Method by lennier · · Score: 1

      One of the basic principles of the scientific method is the ability for peers to independently reproduce results.

      And that's why the plural of 'scientist' is 'army of mantis-men'.

      --
      You are not a brain: http://books.google.com/books?id=2oV61CeDx-YC
    81. Re:Scientific Method by Anonymous Coward · · Score: 0

      In this case, it looks like Wolf-Simon

      Sorry, who?

      Wolf-Simon

      Never heard of him.

      Wolf-Simon's

      You lost me.

    82. Re:Scientific Method by Layzej · · Score: 1

      Duplicating a scientific result would mean that you take the same starting conditions, do the same process, gather your own data, and get the same result...

      For global warming, it means taking two different planet Earths, adding CO2 to one and not the other, and then measuring the temperatures. Can you show me the referreed journal article that describes that experiment being done even once, much less in a reproducable manner as required by the scientific method?

      Don't listen to your detractors. You are absolutely right. This is exactly why we can't be certain that the seasons are caused by a tilt in the Earth's axis relative to its orbit. Sure, there is a correlation, but we all know correlation does not prove causation. And sure, there is a physical basis for the correlation, but you can't prove anything with theory and models. And sure, lab experiments confirm the physics, but as you say, no lab can simulate an entire planet. And sure, there is a scientific consensus, but we all know that the scientists are just interested in grant money.

      You are right on the money. Don't let anyone tell you that we can understand anything as complex as seasons.

  3. A better article on what happened by lucian1900 · · Score: 3, Interesting
  4. Where are the scathing critiques of climatology? by Anonymous Coward · · Score: 0, Troll

    Any healthy science has this type of debate going on. It weeds out the incorrect conclusions while strengthening the correct ones.

    Yet, when it comes to climate science there is almost none of it at all. It is as though nobody is interested in challenging the conclusions of anyone else. I never understood this.

  5. Re:Where are the scathing critiques of climatology by Mindcontrolled · · Score: 3, Insightful

    You might want to try to read the literature?

    --
    Ubi solitudinem faciunt, pacem appellant.
  6. It could be worse... by Anonymous Coward · · Score: 0

    It could be a war WITH arsenic-based life!

  7. Invasion by Anonymous Coward · · Score: 0

    Imagine an arsenic-based microbe invasion. How would a 'host' native to Earth fare?

    This could get interesting.

    1. Re:Invasion by eleuthero · · Score: 1

      I think that I would fair fairly well, as the microbe in question would have only a small amount of resources to colonize me. Arsenic based life requires a substantial amount of arsenic to exist--same with sulfur based life or anything else (though there is much more free sulfur available than arsenic in the earth's general environment). This reference may be helpful: http://en.wikipedia.org/wiki/Abundance_of_elements_on_Earth#Abundance_of_elements_in_the_Earth (there's also a section on the human body on this page).

      I am happy to live on a planet where carbon is one of the most abundant elements--it means I have to put up with carbon-based bugs, but then, I am used to most of those I am ever around.

    2. Re:Invasion by Mindcontrolled · · Score: 1

      True. Small nitpick, though - they wouldn't compete against carbon, but against phosphorus. They are still carbon based, but supposedly work with As instead of P in their DNA and in their energy metabolism.

      --
      Ubi solitudinem faciunt, pacem appellant.
  8. Just a hunch by EmagGeek · · Score: 0

    But I would venture a guess that the scientists who are so vocal about her findings are the very same scientists that rationalize silly things like God and Creationism in their own minds. After all, the existence and viability of arsenic-based life would be an affront to their own distorted views on the origins of life as we know it today.

    1. Re:Just a hunch by NEDHead · · Score: 2

      Actually, my son the recent PhD in Biophysics, and an atheist, believes the research is flawed in detail and in conclusion. He has no agenda other than truthiness.

    2. Re:Just a hunch by Anonymous Coward · · Score: 3, Insightful

      They are just doing their job as scientists. Science is supposed to embrace new ideas slowly. Otherwise we'd be running around believing in N rays and whatnot. Granted, this is a cruel environment to come up with new ideas in, but it's still very much a necessity.

    3. Re:Just a hunch by Anonymous Coward · · Score: 0

      I really, really, doubt that. I'm a Ph.D. biologist who concentrates on molecular biology. She did some interesting work, and if it turns out arsenic can be viable in DNA, I think it would be great. It would open up a lot of new doors for exploration. New findings are cool and exciting. That said, I'm very critical of her.

      My problem with her is her overreaching declaration of what she found. She concluded things you just can't conclude from the experiments she did. There are further experiments that could be done to prove it. She hasn't done them yet. Her experiments point towards arsenic based life being a possibility. They give good reason to do further research exploring the theory. The do not prove the theory by any means. Not by a long shot. There are numerous examples given by others of possible explanations of what she found using standard current biology, Claiming she proved it when she hasn't is why people are jumping on her.

    4. Re:Just a hunch by Mindcontrolled · · Score: 1

      It's a normal part of the scientific process. Holding a PhD in Biochemistry myself, with focus on Biophysical Chemistry, and I kinda agree with your son there. Interesting data, but needs some more rigor. But, well, that is not unusual - works like this all the time. We'll see more papers on this soon, then we'll learn more.

      --
      Ubi solitudinem faciunt, pacem appellant.
    5. Re:Just a hunch by Spykk · · Score: 1

      Which book of the bible was it that stated that no life form could subsist of elements outside of Carbon, Hydrogen, Nitrogen, Oxygen, Phosphorus, and Sulfur? I must have glossed over that part...

    6. Re:Just a hunch by pnot · · Score: 3, Interesting

      Thank you; I was about to point this out. Mod Parent Up, as the saying goes.

      This is how science works, and how it has always worked. You hang your theory out and the rest of the scientific community goes for it with machetes and chainsaws, which either kills it or makes it stronger. That's how we sift the truth from the wishful thinking (and, more rarely, deliberate fraud). That's also why the idea of a "vast conspiracy of scientists" occasionally mooted by (cough) certain persons is so hilarious. It's about as feasible as throwing a dozen pissed-off cats into a large sack and finding that they all decided to enter into a conspiracy.

      And thanks for reminding me about the N-rays; I read the famous Nature paper the other week, and (being a scientist) had great fun watching the poor bastards' theories being shredded in deceptively bland scientific prose.

    7. Re:Just a hunch by Savantissimo · · Score: 1

      That's how it should work, but sometimes there is a premature hardening of consensus and the whole scientific community may believing nonsense for decades on end. Commonly believed theories need to be tested and challenged, too - but funding and social/ peer review concerns often make thatt difficult, particularly in the softer sciences.

      --
      "Is life so dear, or peace so sweet, as to be purchased at the price of chains and slavery?" - Patrick Henry
  9. Blah blah by MightyMartian · · Score: 1

    We're not, because the organisms are just a variant on the same theme as other life. It was an over-the-top unsustainable claim, a bunch of molecular biologists who actually are experts in the field caught it, and that's that.

    --
    The world's burning. Moped Jesus spotted on I50. Details at 11.
  10. Boo by Anonymous Coward · · Score: 0

    Care too elaborate...? If not, then I take it this is a troll?

  11. Re:Where are the scathing critiques of climatology by Anonymous Coward · · Score: 1

    Because challenging them is very dangerous to the challenger.

  12. There's your problem; man making rules about life. by Stumbles · · Score: 1

    The original article presented an exception to one of the fundamental rules of life on Earth. To survive, microbes, plants, and animals all require six essential elements: oxygen, carbon, nitrogen, hydrogen, sulfur, and phosphorus.

    So please answer this questions:

    How many of those elements are used by the life forms found at the hydrothermal vents at the bottom of the ocean?

    What is the make up of their DNA?

    Oh and I must say; life does not give a shit about man made rules and how we think it should be.

    --
    My karma is not a Chameleon.
  13. Really? by smbell · · Score: 1

    Scathing critiques, building of allies and preparation for WAR!!!11!1!!

    Because 'Scientists question results of experiment, suggest other possible conclusions and additional tests' doesn't pull enough eyeballs? And we all know there's nothing we need more than over the top sensationalism in the news.

    1. Re:Really? by blair1q · · Score: 5, Funny

      What is best in science?

      To crush your colleagues, see them refuted before you, and to hear the lamentation of their post-docs.

    2. Re:Really? by Stumbles · · Score: 1

      Besides... remember the smart ass that got lynched for creating the Heart of Gold when all other scientists failed.

      --
      My karma is not a Chameleon.
    3. Re:Really? by Mindcontrolled · · Score: 1

      You do win the internets, good Sir. I salute you. I need to have this made into a t-shirt.

      --
      Ubi solitudinem faciunt, pacem appellant.
    4. Re:Really? by gandhi_2 · · Score: 1

      Jesus Christ, Where the FUCK are my mod points!!!!

    5. Re:Really? by Black+Parrot · · Score: 1

      What is best in science?

      To crush your colleagues, see them refuted before you, and to hear the lamentation of their post-docs.

      LoL.

      But you forgot the part about bonking their women.

      --
      Sheesh, evil *and* a jerk. -- Jade
    6. Re:Really? by RockDoctor · · Score: 1

      But you forgot the part about bonking their women.

      You would want to bonk Farnsworth's woman? Not Leela or Amy (either of whom are worth a poke) but Mom of Momcorp?

      Bleargh. Cheese grater!

      --
      Birds are not dinosaur descendants;birds are dinosaurs, for all useful meanings of "birds", "are" and "dinosaurs"
  14. Arsenic and the lace of life by ackthpt · · Score: 1

    Come on! Spock had copper-based blood and his vulcan father and earthan mother were able to combine DNA and produce him.

    Better Science Through TOS

    --

    A feeling of having made the same mistake before: Deja Foobar
    1. Re:Arsenic and the lace of life by eleuthero · · Score: 1

      This has bugged me for a while--creatures on earth with copper blood don't bleed green (you end up with a blue tint--think certain kinds of seafood). ...

    2. Re:Arsenic and the lace of life by r0b!n · · Score: 1

      Oh yeah! I watched that "Star Trek" documentary too.

    3. Re:Arsenic and the lace of life by Anonymous Coward · · Score: 0

      Well, there is a condition in humans that can turn blood green (http://en.wikipedia.org/wiki/Sulfhemoglobinemia)...

    4. Re:Arsenic and the lace of life by angel'o'sphere · · Score: 1

      And octopus' as well as some other sea creatures have copper based blood as well.
      See: http://en.wikipedia.org/wiki/Hemocyanin they list some animal families with coper based oxygen transfer.

      --
      Cost free eBook I read (by iBook/Kobo/Amazon/ObookO/Gutenberg etc.): "The Green Odyssey" by Philip Jose Farmer.
    5. Re:Arsenic and the lace of life by Anonymous Coward · · Score: 0

      This has bugged me for a while--creatures on earth with copper blood don't bleed green (you end up with a blue tint--think certain kinds of seafood). ...

      There is obviously more than copper in blood, so something of all those other substances must account for the color difference. I am not a chemist though.

  15. Sagan Standard by Anonymous Coward · · Score: 0

    "Extraordinary claims require extraordinary evidence" -Sagan
    The claim of arsenic based life form is fairly extraordinary, it is normal to expect critique.
    Although arsenic based life form isn't "that" extraordinary (compared to string theory). I think NASA/media blew it up out of proportion.
    Only time will tell if the claim will withstand the test.

  16. Moot point by Anonymous Coward · · Score: 0

    Because It's judgement time!!!!! Everyone here ( including me ) will have VIP tickets to hell:) So why pander over important topics anyhow.?

  17. Replicate it or shut up. by blair1q · · Score: 1

    If anyone else can replicate it, she's vindicated. If nobody else can, it never happened.

    1. Re:Replicate it or shut up. by Fred+Ferrigno · · Score: 1

      They're claiming there are flaws in the methodology. If they're right and someone else follows the same flawed methodology, then that result is no more valid than the original result. You want the original authors and anyone attempting to replicate their results to eliminate the potential for any flaws, so somebody's got to raise the possibility. That's the stage they're at now: raising possibilities.

    2. Re:Replicate it or shut up. by RockDoctor · · Score: 1

      If anyone else can replicate it, she's vindicated. If nobody else can, it never happened.

      And if (say) 20% of the replication attempts succeed and the rest fail ... there's some interesting science going on. Particularly if the reason is not immediately obvious.

      --
      Birds are not dinosaur descendants;birds are dinosaurs, for all useful meanings of "birds", "are" and "dinosaurs"
  18. Re:Where are the scathing critiques of climatology by Mindcontrolled · · Score: 1, Offtopic

    Your wit is scalding. Now how about learing some facts, so you can use it to some useful end? Starting point: The scientific community does not give a rats arse about Al Gore or the left. Don't burn yourself on those strawmen.

    --
    Ubi solitudinem faciunt, pacem appellant.
  19. Re:Where are the scathing critiques of climatology by Anonymous Coward · · Score: 1

    They're over there with the scathing critiques of Relativity and Evolution.

  20. Exactly, not science by SuperKendall · · Score: 1

    Since the models based on hypothesis cannot predict the future, nor the past without a lot of tweaking, they are not therefore valid.

    Yet they are being claimed valid and final - hence current GW studies are mostly not science, but political PACs.

    --
    "There is more worth loving than we have strength to love." - Brian Jay Stanley
    1. Re:Exactly, not science by Anonymous Coward · · Score: 1

      I guess some people are just stupid...

      CO2 has been shown to be a greenhouse gas... by John Tyndall in a laboratory... in 1859.

      http://www.aip.org/history/climate/co2.htm

      I guess, it's all propaganda to you... facts, if you don't like them, you will will them away! Sadly, reality cannot be willed away.

    2. Re:Exactly, not science by TapeCutter · · Score: 2, Interesting

      Since the models based on hypothesis cannot predict the future

      Get out of your armchair and actually look at examples of the models predicting unknown phenomena, I'll give you a head start, polar amplification, stratospheric warming.

      current GW studies are mostly not science, but political PACs.

      Give me one example of a political PAC actually creating a model, I would be especially interested in seeing an anti-AGW PAC's computer model since AFAIK no such beast exists. Hint: The IPCC is not a PAC nor does it do any reasearch beyond assesing the published litrature.

      --
      And did you exchange a walk on part in the war for a lead role in a cage? - Pink Floyd.
    3. Re:Exactly, not science by angel'o'sphere · · Score: 1

      Yet they are being claimed valid and final - hence current GW studies are mostly not science, but political PACs.

      It is the oposite around. The anti global warming propagande spread by the Bushs legislatives is not science. Every sane scientist knows since 45 years or longer about GW. Just the USA government ignored it constantly and even started to argue against it and funded pseudo science Anti-GW movements and publications.

      Why don't you read something from those guys: http://en.wikipedia.org/wiki/Club_of_Rome

      The USA have like 280 million inhabitants, most of them seem not to believe in GW. World population is 6 billion, so roughly 5 billion "believe" in it. However I don't like the word believe as it is so religious ... I would prefer "accept it" or "know about it" or even "are concerned about it".

      angel'o'sphere

      --
      Cost free eBook I read (by iBook/Kobo/Amazon/ObookO/Gutenberg etc.): "The Green Odyssey" by Philip Jose Farmer.
  21. Not arsenic based by SteveW928 · · Score: 1

    Arsenic adaptable

  22. Replication not the problem by Anonymous Coward · · Score: 0

    All the comments about reproducing the results are classic misdirection. The problem is not that the results are miraculous, it is that the conclusions drawn from them are excessive. I read this paper when it came out, and the issue can be reduced to this: If you are going to make an extraordinary claim, you better give extraordinary evidence. X-ray crystal structure or GTFO!

  23. Re:There's your problem; man making rules about li by Anonymous Coward · · Score: 0

    You are correct, we are the ones who are searching so we should be chary of making any rules about what we should find.

  24. Re:Just a troll by Black+Parrot · · Score: 1

    But I would venture a guess that the scientists who are so vocal about her findings are the very same scientists that rationalize silly things like God and Creationism in their own minds. After all, the existence and viability of arsenic-based life would be an affront to their own distorted views on the origins of life as we know it today.

    I fixed the subject line for you.

    --
    Sheesh, evil *and* a jerk. -- Jade
  25. Re:Evolution is false by Anonymous Coward · · Score: 1

    Ah, Proof by First Post. Clever move, but not clever enough. I rebut with Proof by Downmod.

  26. Head and Shoulders by Nidi62 · · Score: 1

    Don't worry, if we did have a war with arsenic-based lifeforms, we could just kill them with head and Shoulders shampoo. It's their cyanide, afterall.

    --
    The only thing necessary for evil to triumph is for it to be pitted against a slightly greater evil
  27. Re:There's your problem; man making rules about li by VortexCortex · · Score: 1

    Not to mention the iron breathing bacteria in blood falls.

  28. To paraphrase: by dev_sda · · Score: 1

    Extraordinary results require extraordinary evidence. Disregard personal attacks on Wolfe-Simon, consider comments and considerations on the methods, etc of the work itself, and allow a few years for additional research to support or refute. Most of all keep calm, it's not war, it's just science.

  29. Replication is not the problem by Anonymous Coward · · Score: 0

    I actually read the paper. There was no evidence whatsoever that the bacterium in question was metabolizing arsenic, just that it had a high tolerance to arsenic in its environment. The experiments were all things that I wouldn't doubt the reproducibility of, they just didn't show any evidence for the conclusion.

    However, papers in Nature, Science, and Cell, which in the field we refer to as "vanity journals", are more often like this than not.

  30. Re:There's your problem; man making rules about li by Rutulian · · Score: 1

    Uh, you do realize those "man made rules" are based on observation. Extensive and thorough observation. Basically, the need for oxygen, carbon, nitrogen, hydrogen, sulfur, and phosphorus to sustain life has been demonstrated not just at the organismal level, but also at the molecular level, with predictable and repeating patterns in every life form ever studied. That is the definition of a "Law" in science. Something that is assumed to be a fact because exceptions have never been observed. It, of course, doesn't mean there is no possibility of a life form that "breaks the Law", but the probability is low and such claims are rightfully met with a healthy dose of skepticism. As long as the right controls are done, though, and alternative explanations ruled out, it will eventually be accepted by the scientific community, most likely with a lot of enthusiasm. Findings such as these typically raise more questions than they answer, and a lot of scientists will surely be interested in the underlying enzymology and such, if it holds up to the current scrutiny.

  31. Biology by happinessme · · Score: 1

    Biology is a branch of natural science. Study of biological structure, function, occurrence and development of the law. And biological relationship with the surrounding environment of the science. Biology from the natural history, has experienced experimental biology, molecular biology and systems biology into the period. http://www.cheaptoryburchshop.com/ http://www.sexytoyslove.com/ http://www.edhardygo.com/

  32. Arsenic by ah_kanta · · Score: 1

    allow a few years for additional research to support or refute. it's not war, it's just science. http://www.ruposhibangla.net/

  33. Where are the samples? by UBfusion · · Score: 1

    How is anybody going to attempt reproducing the results when the samples are so scarce they are handed only to "4-5 colleagues"?

    Any lab in the world could refute the existence of bacteria on Moon or Mars rocks/meteorites if they could lay their hands on any. Since they can't, all we can do is ponder on the (hidden or not hidden) agendas that cause such scarcity.

    Same story since the dawn of shamanism and the dark arts: a vicious circle of secrecy, scarcity, knowledge, money and power which are necessary but not sufficient for locating any traces of truth. And to link to a previous /. article today, such truths are most probably related to national security so I'd better discipline myself and shut up.

  34. Where is Step 4. Profit ? by UBfusion · · Score: 1

    Although you are an empiricist, you missed the most important step. If there's no money/power incentive, the experiment is not going to take place. This means that Step 1 has to be amended:

    Step 1. Formulate a hypothesis that has a potential for money/profit and find business partners

  35. Science as usual by Anonymous Coward · · Score: 0

    "Wolfe-Simon is starting to fire back and gather her own allies — one wonders if we're in for another cold-fusion style science war."

    Well, no. I read the second article and to me it looks like it's proper science happening. "We need to get back there and get more evidence", and then there's talk of new experiments and other researchers working with her original strain of bacteria.

  36. Problem with Global Warming simulations by Zorpheus · · Score: 1

    I would not deny that CO2 has an effect on climate. But something is really wrong with the way the result of these models are communicated.
    In the public media we read that the model predicts an increase of the average global temperature by 1 dot something degrees. But what these people don't say is that there is an uncertainty in these values. Stating a range of uncertainty might be unscientific because there are too many known systematic errors and most likely other unknown systematic errors in the model. But without stating such a range people are taking these predictions as absolutely certain values. Climatologists should state clearly that, while it is obvious that there is an effect, their preditions are not certain, and that we do not really know what the earth will be like in the future.

  37. On general skepticism about mainstream science... by Paul+Fernhout · · Score: 1

    http://www.pdfernhout.net/to-james-randi-on-skepticism-about-mainstream-science.html#Some_quotes_on_social_problems_in_science
    "From an article about a sociologist and anthropologist who studies science and technology, Bruno Latour:
            http://en.wikipedia.org/wiki/Bruno_Latour
            "In the laboratory, Latour and Woolgar observed that a typical experiment produces only inconclusive data that is attributed to failure of the apparatus or experimental method, and that a large part of scientific training involves learning how to make the subjective decision of what data to keep and what data to throw out. To an untrained outsider, Latour and Woolgar argued the entire process resembles not an unbiased search for truth and accuracy but a mechanism for ignoring data that contradicts scientific orthodoxy." "

    --
    A 21st century issue: the irony of technologies of abundance in the hands of those still thinking in terms of scarcity.
  38. Interesting ... by applematt84 · · Score: 1

    This will be interesting to watch as events unfold.

  39. War, eh? by Anonymous Coward · · Score: 0

    Ah, humanity. We may not be able to agree on what it is, but you can always depend on us to fight about it. Or, if we're journalists, give it an exciting belligerent name. Perhaps this war will see battles as great as the Huxley-Wilberforce debate.

    "Was it through your lack of rigor or your poor lab conditions that this DNA acquired arsenic?"

    "I would not be ashamed to have DNA incorporating arsenic, but I would be ashamed of a scientist who used his phosphorus-containing genes to obscure sound research."

  40. Remove WAR from the title by Anonymous Coward · · Score: 0

    when these academics start killing each other, then you can call it war