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Half-Life of DNA is 521 Years, Jurassic Park Impossible After All

another random user writes with this quote from Nature News: "Few researchers have given credence to claims that samples of dinosaur DNA have survived to the present day, but no one knew just how long it would take for genetic material to fall apart. Now, a study of fossils found in New Zealand is laying the matter to rest — and putting paid to hopes of cloning a Tyrannosaurus rex (abstract). After cell death, enzymes start to break down the bonds between the nucleotides that form the backbone of DNA, and micro-organisms speed the decay. In the long run, however, reactions with water are thought to be responsible for most bond degradation. Groundwater is almost ubiquitous, so DNA in buried bone samples should, in theory, degrade at a set rate. Determining that rate has been difficult because it is rare to find large sets of DNA-containing fossils with which to make meaningful comparisons. To make matters worse, variable environmental conditions such as temperature, degree of microbial attack and oxygenation alter the speed of the decay process. By comparing the specimens' ages and degrees of DNA degradation, the researchers calculated that DNA has a half-life of 521 years. That means that after 521 years, half of the bonds between nucleotides in the backbone of a sample would have broken; after another 521 years half of the remaining bonds would have gone; and so on."

39 of 315 comments (clear)

  1. Someone forgot to tell these guys by pkbarbiedoll · · Score: 3, Funny
    1. Re:Someone forgot to tell these guys by dpilot · · Score: 4, Insightful

      That just says that they're going to inject the DNA - it doesn't say that they're going to get viable embryos out of it.

      --
      The living have better things to do than to continue hating the dead.
    2. Re:Someone forgot to tell these guys by sed+quid+in+infernos · · Score: 3, Informative

      Why do they need to know? 10,000 years is roughly 20 half-life periods, so they should expect roughly 1-millionth of the DNA to remain.

    3. Re:Someone forgot to tell these guys by busyqth · · Score: 5, Insightful

      Why do they need to know? 10,000 years is roughly 20 half-life periods, so they should expect roughly 1-millionth of the DNA to remain.

      Since the wooly mammoth genome is approximately 4.7 billion in 58 chromosomes, for an average of 81 million base pairs per chromosome, the DNA fragments would be, on average 81 base pairs long, which should be enough to figure out the original sequence after duplicating and matching. So a full reconstructed mammoth genome should be possible.

    4. Re:Someone forgot to tell these guys by Groo+Wanderer · · Score: 5, Interesting

      Heck, 81 base pairs would save you a lot of time chopping strands for PCR, you would already have the pieces. :)

      Seriously though, given those numbers are for a single cell, how many do you have with a mammoth carcass? More than 1, in fact more than 1 million. If you can find a lab blender big enough to stuff a mammoth carcass in to, the rest should be trivial. I would also venture that after a while, the fact that a dinosaur bone didn't degrade to dust means that it is better preserved than your average thing stuffed in to the ground so the half life would, after a point, extend.

      Given a few dinosaur samples, you could probably get enough to reassemble most of the genome. With some not all that complex math, you can compare it to a few key reptile sequences and likely get some strong hints or even direct sequences that are missing. Some things change a lot over time, others do not or can not.

      And yes, I did do this in college. No, not on dinosaurs though, that would have been a bit more fun to talk about at the bars.

                    -Charlie

    5. Re:Someone forgot to tell these guys by Lonewolf666 · · Score: 5, Informative

      Something must be wrong with the 521 years. 65 million years / 521 years = 124.760 half lifes.

      That means only 1 / (2^124.760) = 1 / (3,1787695069134767997232294562089e+37556) of the original DNA should be available for analysis today. Those guys would be lucky to find a single base pair that has not decayed. Hardly a sufficient basis to make a quantitative analysis ;-)

      --
      C - the footgun of programming languages
    6. Re:Someone forgot to tell these guys by gewalker · · Score: 5, Insightful

      Even more importantly, this ignores a previous published article on "DNA Sequence from Cretaceous Period Bone Fragments" -- Science 266 (5188) 1229-1232, here is a PDF of the article in Science. Either 80 mya (Cretaceous) is horribly wrong, the 521 year half-live of DNA is horribly wrong, Woodruff, et al were horrible deceived (or frauds) or some combination of these.

      You would hope evidence would be the deciding factor, but scientists are human too, and the interpretation of evidence is often more important than the actual evidence -- it is very hard to upset to prevailing opinion (as it should be when the opinion is well founded)

    7. Re:Someone forgot to tell these guys by Groo+Wanderer · · Score: 4, Funny

      Yes, but back then we called them 'Safety goggles'. They had a precursor to a holographic UI called 'scratches'. It worked much the same in practice.

                      -Charlie

    8. Re:Someone forgot to tell these guys by mishu2065 · · Score: 5, Funny

      521 years should be enough for anybody.

    9. Re:Someone forgot to tell these guys by buchner.johannes · · Score: 3, Informative

      With the numbers of busyqth (mammoths died out 4500 years ago by the way):
      If you have 1 DNA in pieces of 1000 base pairs length from one mammoth, it must not be older than 8500 years.
      If you have 1 DNA in pieces of 81 base pairs length from one mammoth, it must not be older than 10000 years.
      If you have a million DNA pieces of 81 base pairs length from a million mammoths, they must not be older than 30000 years.
      The returns are diminishing quickly. 10000 years can not be exceeded significantly.

      --
      NB: The message above might reflect my opinion right now, but not necessarily tomorrow or next year.
    10. Re:Someone forgot to tell these guys by Wraithlyn · · Score: 4, Funny

      10,000 years is roughly 20 half-life periods

      Hey now there's no need to exaggerate, Gabe said HL3 will be done when it's done.

      --
      "Mind, as manifested by the capacity to make choices, is to some extent present in every electron." -Freeman Dyson
    11. Re:Someone forgot to tell these guys by Hal_Porter · · Score: 3

      He's a creationist! BURN HIM!

      --
      echo -e 'global _start\n _start:\n mov eax, 2\n int 80h\n jmp _start' > a.asm; nasm a.asm -f elf; ld a.o -o a;
  2. Mammoths? by Culture20 · · Score: 3, Funny

    Quick, what does this mean regarding mammoth burgers?

  3. Cryogenics by SJHillman · · Score: 3, Interesting

    Does this have any bearing on cryogenics or would that preserve the DNA?

    1. Re:Cryogenics by biodata · · Score: 5, Informative

      Cryogenics would pretty much stop most of the reactions that break the bonds, so half-life would be hugely increased, especially if material is properly dried first. Seeds can last for many decades and still grow if dried to 5% moisture content and frozen at -80. Not sure about animal embryos, but sperm and eggs also.

      --
      Korma: Good
  4. The hell with dinosarurs... by cayenne8 · · Score: 4, Funny

    ...for God's sake, lets get samples and clone Keith Richards before its too late!?!?!?

    --
    Light travels faster than sound. This is why some people appear bright until you hear them speak.........
    1. Re:The hell with dinosarurs... by NEDHead · · Score: 4, Funny

      Isn't he already older than 521 years? I suspect his DNA is suspect as it is.

  5. Re:Ummmm by biodata · · Score: 4, Informative

    It is an English phrase meaning 'putting an end to' but using fewer words.

    --
    Korma: Good
  6. No water, no air, no bonds broken? by Doofus · · Score: 5, Insightful

    So in amber, or some other similar impermeable substance, the chemical reactions requiring water or air might well be prevented or dramatically slowed, thus the degradation of DNA might be substantially slower than the 521 years described in the summary.

    Not necessarily the end of the Jurassic Park idea.

    --
    If the Government becomes a lawbreaker, it breeds contempt for law; ... it invites anarchy. - Brandeis
    1. Re:No water, no air, no bonds broken? by Sparticus789 · · Score: 4, Interesting

      Also worth mentioning, what about the tar pits? If an animal is surrounded by tar and sealed in, what happens to the DNA degradation?

      --
      sudo make me a sandwich
  7. Question... by Savage-Rabbit · · Score: 5, Insightful

    If the half-life of DNA is 521 years how are scientists able to sequence 30.000 year old Neanderthal DNA? Presumably this applies to regular DNA, did Svante Pääbo and his team sequence mtDNA?

    --
    Only to idiots, are orders laws.
    -- Henning von Tresckow
    1. Re:Question... by MaXintosh · · Score: 5, Informative

      Scientist here (you can tell by my hat, and the fact that something like 90% of my comments on /. start with "I'm a biologist"). First, the DNA we get is from better preserved remains, which kicks the half life back further (It's in TFA, but not mentioned in the summary). There's still a 'deadline' around 7 MYA, where (allegedly) all the bonds would have pretty much been broken at that point - Frozen remains supposedly have a halflife around 158 kya. It's that dang phosphate backbone that's too willing to run off and go have reactions with any trallop of a molecule that wanders on by.

      This means even in the relatively recent past, the amount of DNA we're looking at is pretty dang tiny. Part of the reason ancient DNA is so dang tricky is because the much of what you sequence is not actually what you're interested in - doubly so when you're sequencing something closely related to humans. For example, did some spot sequencing of ancient/historic polar bear remains, and had to toss out a chunk of the data we got back, as it was soil bacteria(/fungi/pollen) contamination. How do we know which is which? We had good scaffolds to align our bear sequences back up again, though not everyone is as fortunate as us.

      In addition to being rare, what is left is fairly short. You can imagine if you start putting breaks in at random, your average length is going to start declining rapidly, and then level out at some small value that takes quite a while to get smaller. It'll get there, and given geologic time scales, a lot of what we want is that far back, but it'll take a while.

      Finally, what isn't mentioned in this summary is that there was massive variance in the estimates of half-life. Supposedly only 40% of the variance in halflife was explained by age. Preservation, inter-lab differences, and good old fashioned luck probably contribute considerably to variance in half-life.

      There are other factors too, but they're boring, and I should probably get work done instead of dragging out this reply.

      (And to answer your latter question, Neanderthals have been sequenced whole genome, not just mtDNA).

  8. Uh, what? by Daetrin · · Score: 3, Insightful

    Wikipedia seems to have a page all about doing what this article says is impossible: http://en.wikipedia.org/wiki/Ancient_DNA

    It claims there are multiple cases of Neanderthal DNA being sequenced, and a couple quick google searches seem to indicate there are many other similar situations where DNA was recovered.

    So i'm wondering, did this study perhaps prove that if nothing is done to preserve the DNA after death then... surprise! The DNA isn't preserved?

    --
    This Space Intentionally Left Blank
  9. Practical limit,~1.5 million years by slew · · Score: 4, Informative

    The 521 year half-life is if the DNA is exposed to water in typical situations, ITFA (in the article) they give an estimate for the best case situation...

    The team predicts that even in a bone at an ideal preservation temperature of 5 C, effectively every bond would be destroyed after a maximum of 6.8 million years. The DNA would cease to be readable much earlier — perhaps after roughly 1.5 million years, when the remaining strands would be too short to give meaningful information.

    “This confirms the widely held suspicion that claims of DNA from dinosaurs and ancient insects trapped in amber are incorrect,” says Simon Ho, a computational evolutionary biologist at the University of Sydney in Australia. However, although 6.8 million years is nowhere near the age of a dinosaur bone — which would be at least 65 million years old — “We might be able to break the record for the oldest authentic DNA sequence, which currently stands at about half a million years,” says Ho.

    As other posters point out, the famous mammoth recreated from DNA was from about 10,000 years ago, much less than the 1.5 million year practical limit estimated by this research team.

  10. Re:Ummmm by Anonymous Coward · · Score: 5, Funny

    If you don't pay for your putting, you can't have any meat. How can you have any meat if you don't pay for your putting?

  11. So what did MarySchweitzer find? by Zinho · · Score: 4, Interesting

    Is this why we haven't heard much from Mary Schwietzer lately? Six years ago she isolated soft tissue remnants from inside a T-rex femur.

    More recently, Charlotte Oskam (Biologist at Murdoch University in Australia) identified DNA in fossilized egg shells.

    We've always known that DNA was unlikely to survive the passage of aeons, this just puts a number to it. Specific conditions could still allow better than typical preservation, and so I dislike making an absolute statement that we'll never find it. Hopefully those who are still looking for the elusive ancient DNA will take this study as a way to focus their search rather than have their funding cut.

    --
    "Space Exploration is not endless circles in low earth orbit." -Buzz Aldrin
  12. News for nerds by Hadlock · · Score: 3, Funny

    But we're going to explain to you how half-lives work anyways.

    --
    moox. for a new generation.
  13. Hmm by kiriath · · Score: 4, Funny

    I wonder if 521 years is how long we'll be waiting for Half Life 3?

  14. Ladies and gentlemen.. by jd2112 · · Score: 4, Funny

    Welcome to Dodo Park.

    Sorry, it just doesn't have the same ring to it.

    --
    Any insufficiently advanced magic is indistinguishable from technology.
  15. Re:But what about... by Anonymous Coward · · Score: 3, Funny

    If the dinosaur is encased in amber, why do we need to wait for a mosquito? Why would we want to wait for a mosquito that can bite through amber... drill the thing then get the hell out of there.

  16. Jurassic Park still possible by captaindomon · · Score: 3, Interesting

    Even given the half life, we may be able to resurrect dinosaurs. Remember that we are talking about information that is encoded, with billions of copies hanging around. Given we can find enough samples, even if they are all missing different portions, we may be able to piece together the complete sequence by combining the portions of each sample that survived. Throw in extremely cold temperatures like the article talks about, and some Jurassic-park style replacement of certain portions from modern animals, and it is still very possible. Maybe not today, but in 100 years I can see it being very possible.

    --
    Just because I can hook a shark from a boat, I do no offer to wrestle it in the water.
  17. Re:But what about... by fahrbot-bot · · Score: 3, Funny

    A mosquito that bit a dinosaur encased in amber....

    Forget that. I'd like to see the tree that generated the sap to encase a dinosaur in amber. :-)

    --
    It must have been something you assimilated. . . .
  18. "Impossible After All" by jlv · · Score: 3, Insightful

    One of the best ways to make it happen is to declare it's "impossible". It gives people something to strive for.

  19. Re:Not impossible by ColdWetDog · · Score: 4, Funny

    OK. I just showed my computer a picture of a Komodo Dragon. It just is sitting there, doing nothing.

    Now what am I supposed to do?

    --
    Faster! Faster! Faster would be better!
  20. Re:But what about... by somersault · · Score: 4, Funny

    Why is the parent modded 'Funny' - that is the story behind how the scientists in Jurassic Park found dinosaur DNA...

    You just explained why it's funny.

    --
    which is totally what she said
  21. Re:But what about... by fragtag · · Score: 5, Funny

    He meant frogs not "frog's". Dino DNA is of course really large (Were talking a T-Rex afterall), so all they have to do is inject a whole frog directly in sequence. AAAATSAATTTTS(frog)AAA

  22. Re:Ummmm by rpresser · · Score: 5, Funny

    The half-life of unusual British phrases in the US is less than 18 years.

  23. the mammoth DNA is frozen by circletimessquare · · Score: 4, Interesting

    the assumptions in the 521 year half life number is that we are above freezing temperatures. so mammoth DNA has a different experience

    there are arguments to make that frozen water would lengthen the half life (frozen water is not as chemically active) or shorten it (ice crystals shredding the dna physically rather than chemically)

    i'm not knowledgeable enough to guess if the frozen effect would save the DNA better or shred it even worse, but i think it is a valid to say that the half life would be a lot different if you are dealing with a corpse that was frozen at death and stayed that way in permafrost the entire thousands of years time before getting to a modern biotech lab

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
  24. Re:So wait... by funwithBSD · · Score: 3, Funny

    It's 98% chicken DNA,

    With 2% Samuel Jackson mixed in to make it a Bad Ass Mother Fucker.

    --
    Never answer an anonymous letter. - Yogi Berra