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Most Popular Human Cell In Science Gets Sequenced

ananyo writes "The research world's most famous human cell has had its genome decoded, and it's a mess. German researchers this week report the genome sequence of the HeLa cell line, which originates from a deadly cervical tumor taken from a patient named Henrietta Lacks (Slashdot has previously noted a film made about the cells and there's a recent mutli-award winning book on Lacks). Established the same year that Lacks died in 1951, HeLa cells were the first human cells to grow well in the laboratory. The cells have contributed to more than 60,000 research papers, the development of a polio vaccine in the 1950s and, most recently, an international effort to characterize the genome, known as ENCODE. The team's work shows that HeLa cells contain one extra version of most chromosomes, with up to five copies of some, and raises further questions over the widespread use of HeLa cells as models for human cell biology."

13 of 63 comments (clear)

  1. Re:Editor must be from Pittsburgh? by YodasEvilTwin · · Score: 2, Insightful

    Apparently you don't speak to many live human beings.

  2. That's a hell of a mutation by i+kan+reed · · Score: 2

    5 copies of some chromosomes? That seems likely to be an artifact of many many generations of mitosis, not something the original sample had. The good news is that we'll have better experimental controls in future science. The bad news is that this might invalidate a lot of research.

    1. Re:That's a hell of a mutation by the+biologist · · Score: 4, Interesting

      The original sample was the cancer which killed Henrietta Lacks. Cancers generally have rampant chromosomal aberrations, though it is not entirely reasoned out if the aberrations are a cause or consequence of the unregulated growth which defines the cancer.

      This result doesn't invalidate any science. Every experiment using a model teaches us something about the model. We make inferences from those results which we apply and test in other systems, such as human medicine. Given that there are humans walking around with alterations to their chromosomes (admittedly at a lesser level than this), even results from one human don't necessarily apply to any other human.

    2. Re:That's a hell of a mutation by interkin3tic · · Score: 3, Interesting

      I doubt it will invalidate much research. Everyone who uses them is aware that HeLa cells aren't really "human" cells, all research should have been based on the understanding that the genome was a bloody mess. Most of the research I've seen on it has been about cell division, which it doesn't seem too messed up with.

    3. Re:That's a hell of a mutation by Anonymous Coward · · Score: 2, Informative

      Actually, in my lab we have analyzed a number of primary tumors (not cell lines) and we have found this kind of genomic aberrations in most of them. It really depends on the tumor type.

    4. Re:That's a hell of a mutation by pchimp · · Score: 5, Informative

      You're exactly right, and this type of criticism does come up occasionally when using HeLa. This is a cell line that is prone to mutation that has been been cultured artificially for more than half a century: it has evolved to live in a dish. It's not comparable to taking primary cells from a fresh healthy (or cancerous) human cervix. Additionally, it's fairly certain that HeLa has differentiated into a wide number of distinct cell lines at this point, though we still generally refer to it as a monolithic cell line.

      It does not invalidate studies using HeLa, but it kind of highlights that HeLa is more properly viewed as a model organism (i.e. an easily bred life form that can teach us about basic biological principles, and is also close enough to humans to be medically relevant). And this is how it is used -- biologists are not unaware of the caveats associated with these lines.

    5. Re:That's a hell of a mutation by glwtta · · Score: 2

      You're not getting it. It's likely that the 5 copies were characteristic of the cancer cells when she died - as the parent said, cancer cells are all sorts of fucked up.

      That's entirely besides the point, though. These cell lines are not used as a model of cancer they're used as a model of human cells. Those working with them understand the limitations of the model (most of the time, at least); it's well known that cell lines are not the same thing as cells in a live organism, no one was assuming otherwise.

      There is no new information here. This is a little like looking at humans and mice, noticing that they are different, and announcing that this "Invalidates all research done on mice!"

      Please don't assume that all researchers are idiots all of the time.

      --
      sic transit gloria mundi
  3. Re:Editor must be from Pittsburgh? by tepples · · Score: 3, Informative

    "Gets" can also mean "becomes", and "sequenced" here is a past participle (called a passive participle by some grammarians), not a past tense finite verb.

  4. Re:Cloning by interkin3tic · · Score: 5, Interesting

    That's not Ms. Lack's genome anymore. The summary says it has more than the usual number of chromosomes. Cancer cells generally lose the ability to maintain their genomes, they become very unstable, allowing a bizzare, short-term form of evolution to occur. More mutations allow the cancer to get better at proliferating and invading, at least right up until the host dies. Usually, anyway, HeLa is or was unique in that it managed to escape it's own doom, much like we might need to do with Earth.

    Sorry, got off topic there. Anyway, cloning HeLa cells, as in putting the genome into a fertilized egg like Dolly the sheep, that would probably not make a complete embryo. I'm not familiar with HeLa's genome, but I think it's likely they've lost the ability to control cell division, cell death, and/or cell differentiation. You need those processes to make anything that looks like an embryo. You'd likely end up with just another petrie dish of HeLa cells. It would be a neat if ethically questionable experiment.

  5. Just imagine a "Supernatural" episode by Culture20 · · Score: 3, Funny

    ...with the ghost of Ms. Lacks. They'd have to salt & burn every last cell line.

  6. The only surprise was just HOW THOROUGHLY by Ungrounded+Lightning · · Score: 2

    this particular cancer's DNA was fouled up.

    Even that was not all THAT surprising. Most cancers tend to be weak - because the continuous reproduction leads to them skipping things they would normally do in idle time between reproductions and also causes them to use up resources on reproduction as fast as they can absorb them.

    Many cancer therapies are built around this, ALMOST killing off the normal cells in the hope of JUST BARELY killing off the weaker cancer cells. (An exception to the above is Melanoma, which gets extra energy as a side-effect of synthesizing melanin, making it more robust than normal tissue.)

    HeLa is very robust and invasive - to the point of being able to survive outside the original host body and contaminate cell cultures. (In fact a now-discarded theory of cancer cell progression, with all types of cancer gradually mutating and converging on a set of common characteristics, turned out to be based on an illusion caused by the robust HeLa cancer cells scattered about in research laboratories eventually contaminating cultures of other cancer cell lines and taking them over.)

    Cells with more copies of chromosomes tend to be more robust. So it's not too surprising that this line has extra copies of most chromosomes.

    --
    Bantam Dominique roosters crow a four-note song. Once you've heard it as "Happy BIRTHday" you can't NOT hear it that way
  7. Re:Editor must be from Pittsburgh? by Half-pint+HAL · · Score: 3, Insightful

    Maybe he speaks to many live, educated, human beings.

    Yes, the zeitgeist is for intelligent people to drop in a few bon mots of another language. In fact, I'd say it's a sina qua non, a very important shibboleth that distinguishes the literate from the phillistine.

    And as the partially-agentive-passive (get done etc) isn't a direct analogue of a classical Latin form, it's obviously stupid.

    Seriously, when we stop pegging people as stupid simply because they speak actual real-life English, we'll find that the world contains far more people of intelligence than you ever imagined.

    --
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  8. Re:Editor must be from Pittsburgh? by Zontar+The+Mindless · · Score: 2

    "sequenced" is past tense.

    No. Just No.

    Grammar Nazi? Pffffft--you're not even a Grammar Hitler Youth, boyo.

    "Sequenced" is a participle, which functions as an adjective, not a verb, and thus has no tense of its own.

    In addition, it's a passive participle, which means that the noun described is the recipient of the action, rather than its cause.

    Also, 'to get' is a perfectly acceptable if not entirely formal substitute for 'to be' in passive constructions. German and Swedish don't have this problem, always preferring werden and bli, both meaning specifically 'to become', respectively, and never admit sein and vara in this sense. We English speakers got screwed up because we layered Vulgar Latin/Norman French progressive tenses on top of the Germanic passive and perfect. This was further complicated by the fact that the latter used 'to be' with verbs of motion and 'to have' with others, a distinction still strictly made in modern German (always er ist gegangen, never er hat gegangen) and optional in modern English (he has gone or he is gone [an exception to be usual rule of 'to have + participle = active perfect, to be + participle = passive']), BTW).

    Don't swim with the sharks if you don't know which end of the speargun to point at yourself.

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