Paper Retracted After Anti-Immigrant Scientist Bans Use of His Software (sciencemag.org)

sciencehabit writes: An 11-year-old research paper describing Treefinder, a computer program used by evolutionary biologists, has been retracted after the program's developer banned its use in European countries he deemed too friendly to refugees. In September, German scientist Gangolf Jobb announced on his website that researchers in eight European countries, including Germany and the United Kingdom, were no longer allowed to use Treefinder, which builds phylogenetic trees from sequence data. The move sparked outrage among some scientists, and now, BMC Evolutionary Biology has pulled the 2004 paper describing the software because the license change 'breaches the journal's editorial policy on software availability.'

Comments

Open Source license except H1B shops have to pay!

[Anonymous Coward]

Let's do it!

I FOR ONE WELCOME OUR MEXICAN OVERLORDS

[TiggertheMad]

You clearly have never been to a Home Depot in the morning on a work day.

This is why I will never say anything bad about Mexican immigrants. You see dozens of them out at Home Depot waiting patiently for hard work. I have NEVER seen a unemployed white guy out there. I only ever see white people standing on street corners with cardboard signs, begging for handouts. I welcome immigrants (documented or otherwise) willing to come to our country and work hard to get ahead. Good for them. The only welfare leeches I see are the native citizens with a sense of entitlement that aren't willing to try to do some real work when they are unemployed.

Re:Easy to explain

[gringer]

why is key academic software not open source?

Because people do the minimum required to get publications (and/or money), and cleaning up source code (so it can be exposed to the world) is a lot of work. This is especially the case if the code depends on other libraries with various different software licenses.

One of the ways to help fix this problem is to place restrictions on publication, so that open source licences are required for software. F1000 Research has just changed their policy to do this:

http://blog.f1000research.com/...

We recently strengthened our stance on software availability to better align with our Open Science principles. Now, the source code underlying any newly presented software must be made publicly available and assigned an open license. We strongly encourage the use of an OSS approved licence, but will accept other open licenses including Creative Commons. Software papers describing non-open software, code and/or web tools will be rejected.

The current situation demonstrates that forcing these licenses is required in order to get people to use them. BMC Evolutionary Biology already had a recommendation for open source licenses in its policy:

BMC Evolutionary Biology recommends , but does not require, that the source code of the software should be made available under a suitable open-source license that will entitle other researchers to further develop and extend the software if they wish to do so. Typically, an archive of the source code of the current version of the software should be included with the submitted manuscript as a supplementary file. Since it is likely that the software will continue to be developed following publication, the manuscript should also include a link to the home page for the software project. For open source projects, we recommend that authors host their project with a recognized open-source repository such as bioinformatics.org or sourceforge.net

Re:The strings are his to attach

[hey!]

There was this old guy who was a friend of my wife's family who was smart, and funny, and an all around reasonable guy -- unless the topic of hispanics came up. And then it was like he was a totally different person. He became a ranter, and everyone around him would try to change the subject.

It wouldn't be an exaggeration to say that he hated Hispanics. As far as he was concerned if you were born hispanic that automatically made you useless, human trash. For the life of me I couldn't figure out where he got that hatred. As it turns out I grew up in the same neighborhood he did, albeit forty years later, and only when I was a kid were there many hispanics moving in. He'd moved up in the world after WW2; he left the neighborhood and lived in a series of lily-white suburbs. So as far as I could tell he'd never even *known* any hispanics personally.

And in the end I came to the conclusion that was the whole point. He didn't hate backs, or Poles, or Jews, or Catholics or Italians -- because he grew up in a neighborhood with all of those kinds of people, or served with them during the war. His opinions on hispanics was formed in a kind of vacuum. After that forty years of confirmation bias, unchecked by any actual firsthand experience turned what had been commonplace casual bigotry into full-blown batshit craziness.