The Dark Side of Certificate Transparency (sans.edu)
Slashdot reader UnderAttack writes: Certificate Transparency is a system promoted by companies like Google that requires certificate authorities to publish a log of all certificates issued. With certificate transparency, you can search these logs for any of the domains you own, to find unauthorized certificates. However, certificates are not only used for public sites. And with all certificates being published, some include host names that are not meant to be publicly known. An update of the standard is in the works to allow entities to obfuscate the host name, but until then, certificate transparency logs are a good recognizance source.
1) Hostnames leak all the time. A client will make a DNS request and the name becomes known even if it is not resolvable on the public Internet.
2) If you really care that much, run an internal CA. Lots of ways to do it, most server OS's have built-in or easily available internal CA software.
Keeping a hostname out of the certificate log is pretty much pointless security by obscurity.