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20% of Scientific Papers On Genes Contain Conversion Errors Caused By Excel, Says Report (winbeta.org)

An anonymous reader writes from a report via WinBeta: A new report from scientists Mark Ziemann, Yotam Eren, and Assam El-Osta says that 20% of scientific papers on genes contain gene name conversion errors caused by Excel. In the scientific article, titled "Gene name errors are widespread in the scientific literature," article's abstract section, the scientists explain: "The spreadsheet software Microsoft Excel, when used with default settings, is known to convert gene names to dates and floating-point numbers. A programmatic scan of leading genomics journals reveals that approximately one-fifth of papers with supplementary Excel gene lists contain erroneous gene name conversions."

It's easy to see why Excel might have problems with certain gene names when you see the "gene symbols" that the scientists use as examples: "For example, gene symbols such as SEPT2 (Septin 2) and MARCH1 [Membrane-Associated Ring Finger (C3HC4) 1, E3 Ubiquitin Protein Ligase] are converted by default to '2-Sep' and '1-Mar', respectively. Furthermore, RIKEN identifiers were described to be automatically converted to floating point numbers (i.e. from accession '2310009E13' to '2.31E+13'). Since that report, we have uncovered further instances where gene symbols were converted to dates in supplementary data of recently published papers (e.g. 'SEPT2' converted to '2006/09/02'). This suggests that gene name errors continue to be a problem in supplementary files accompanying articles. Inadvertent gene symbol conversion is problematic because these supplementary files are an important resource in the genomics community that are frequently reused. Our aim here is to raise awareness of the problem."
You can view the scientific paper in its entirety here.

3 of 349 comments (clear)

  1. Re:Wait, what? by pem · · Score: 5, Funny
    > Spreadsheets are wonderful things...

    Citation needed.

  2. Re:LaTeX by NotInHere · · Score: 4, Funny

    LaTeX is not free of problems either. They are just different. If you care, you take the time to fix them, if you don't you don't fix them. Simple as that.

    https://pbs.twimg.com/media/Ci...

  3. Re: Including this one? by Maritz · · Score: 5, Funny

    I can see how it helps with people who don't spell very well. But for people who can, it's an outright hinderance. Also, they should grow up and add profanity, The puritan dictionary is a ducking disgrace, utterly shot.

    --
    I do not want your cheap brainburning drugs. They are useless for work. And I am a working man today.