Researchers Store Computer OS, Short Movie On DNA (phys.org)
An anonymous reader quotes a report from Phys.Org: In a new study published in the journal Science, a pair of researchers at Columbia University and the New York Genome Center (NYGC) show that an algorithm designed for streaming video on a cellphone can unlock DNA's nearly full storage potential by squeezing more information into its four base nucleotides. They demonstrate that this technology is also extremely reliable. Erlich and his colleague Dina Zielinski, an associate scientist at NYGC, chose six files to encode, or write, into DNA: a full computer operating system, an 1895 French film, "Arrival of a train at La Ciotat," a $50 Amazon gift card, a computer virus, a Pioneer plaque and a 1948 study by information theorist Claude Shannon. They compressed the files into a master file, and then split the data into short strings of binary code made up of ones and zeros. Using an erasure-correcting algorithm called fountain codes, they randomly packaged the strings into so-called droplets, and mapped the ones and zeros in each droplet to the four nucleotide bases in DNA: A, G, C and T. The algorithm deleted letter combinations known to create errors, and added a barcode to each droplet to help reassemble the files later. In all, they generated a digital list of 72,000 DNA strands, each 200 bases long, and sent it in a text file to a San Francisco DNA-synthesis startup, Twist Bioscience, that specializes in turning digital data into biological data. Two weeks later, they received a vial holding a speck of DNA molecules. To retrieve their files, they used modern sequencing technology to read the DNA strands, followed by software to translate the genetic code back into binary. They recovered their files with zero errors, the study reports. The study also notes that "a virtually unlimited number of copies of the files could be created with their coding technique by multiplying their DNA sample through polymerase chain reaction (PCR)." The researchers also "show that their coding strategy packs 215 petabytes of data on a single gram of DNA."
One step closer...
I don't know much about DNA. Can we modify (or extend) our DNA to include some important files that we generally keep backed up in the cloud?
My drives are much heavier since I backed up my movie collection, couldn't even pick one of them up. Now that I think about it, we could fill this DNA with data and throw it at strategic targets from the moon.
...Libraries Of Congress would fit on DNA?
https://www.fourmilab.ch/documents/sftriple/gpic.html
A Pioneer plaque? I was reading the above when this article pinged on my RSS feed. I'm still giggling.
It's stores in individual units that are base 4. (AGCT instead of 01) Oh, living organisms read 3 units at a time called a codon which is 4^3 or 64 combinations.
Did you know 80 to 90% of the moderators on slashdot wouldn't recognize a troll even if one dragged them under a bridge.
The real news in this story is that we now have companies that can create designer DNA from scratch.
a story here makes me go WOW!
If this is legit it would be one. Time will tell though.
Will it store Linux?
What are the odds that some strange combination of digital data stored via DNA comes 'alive' and starts replicating?
Not a biologist, just curious.
The obvious immediate practical use for this technology is for Monsanto to digitally sign their GM crop seeds, to prove without a doubt that those pesky organic farmers next door have stolen their IP.
Soon they may find a cure for transexuals, then we can stop wasting public money on transgender bathrooms and put it into more genetics research.
Oh God, please don't let it be Windows. The last thing we need is Microsoft trying to trick us into installing it into our own DNA.
Which pop-up nag-ware method do you think they'd use? Acne with a Windows logo shape? "Install Windows DNA now for 'security' and 'healthy skin'. Dermatologist approved!"
Oh and you think the telemetry tracking is bad now? You better hope someone invents a better tinfoil hat, asap. You know at the very, very least they'll be selling that data to your health insurance provider.
But wait, there's more!
They included a virus to boot? Are they insane or is this the method to 'crash' the Windows DNA upgrade resistance and anti-government-tracking dissent?
( the number of puns, jokes, and conspiracy theory ranting you explore on this topic must be off the charts, too bad I suck at it. :P Come on folks, I know you all can do better! )
72000 strands * 200 base pairs * 2 bits per base pair / 8 bits per byte = 3.6 MB
Must have been a short film!
From Nature:
The rich fossil record of virii in equine species has made them a model for evolutionary processes1. Here we present a 1.12-times coverage draft genome from a virus found in horse bone recovered from permafrost dated to approximately 560–780 thousand years before present (kyrBP)2,3. Using polymerase chain reaction (PCR) DNA decoding techniques described by Erlich1 et al, [DNA Fountain enables a robust and efficient storage architecture] we recovered a total of 2.14 × 106 bytes in DNA oligonucleotides and perfectly retrieved the information from a sequencing coverage equivalent to a single tile of Illumina sequencing. The process allowed retrieval and decoding the data, reference, https://youtu.be/dQw4w9WgXcQ
So a load of jizz that I release could contain the data that forms the movie that caused me to release it? Crazy.
The $50 amazon gift card was a genius idea. With PCR they will become infinitely rich off of those alone!
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To be a pnemonic courier with this tech.....could probably encode it into your bloodstream or implant a capsule under your skin...
You're messin' with my Zen Thing, man.....
Probably the most important story in a year and not much real interest.
I wonder how long before we are uploading a small biopic of our lives or journal of thoughts for passing on from generation to generation... all embedded in our childrens genes... Wild concept...
I do not block ads. I do block third party scripts.
Does anybody else find it disturbing that one of the files purposely chosen for this experiment was a computer virus. The Encoding is meant to be read by "Modern sequencing technology". So how long before someone figures out how to write a virus into DNA that infects the device used to read it?
For an updated Johnny Mnemonic remake.
If I fertilize a complete operating system with a french film, what will the offspring look like? Plan 9, or Windows Bob?
Elephant in the room is nucleases. The half life of DNA offers stability for thousands of years, but all it takes is one bacterium (or a literal computer virus) getting in and secreting nucleases to wipe out the entire system . I'm sure it can be addressed with engineering or PTMs to keep it sterile and low temp but the issue wasn't even mentioned in the paper.
a virtually unlimited number of copies of the files could be created
But... but... that's UNpossible!
There is nothing special in encoding something with generic code. The real challenge is to make it transcribtable into something meaningful, so a cell could produce something. So far only viruses could do so after hundreds of millions years of trials and errors.
Some species stored their porn in DNA, which got dumped somewhere and was the basis for life as we know it today.
Makes me wonder if aliens already did this; Redundant array of independent humans.....
It has all the hallmarks: It is written "in the code of life", it is an "OS" and a "movie". At the same time it is completely and utterly worthless, because DNA is not a digital storage medium by nature, but a blue-print storage that is limited in what it can store by the reading mechanism to very specific things. Most binary sequences on it are just completely meaningless. May as well put a movie into the pattern of stones used to pace a sidewalk. Possible, but utterly meaningless.
Most ACs are not even worth the keystrokes to insult them. Be generically insulted by this and ignored otherwise.
> However it is said that it is the public's distress at the status quo which has led to the election of a disruptive president.
Perfect choice of words there. "A disruptive President", I like it. It'll be interesting to see what happens with Trump because he's certainly different - on the one hand he's not at all diplomatic or "politically correct" or whatever you want to call it, on the other hand he's not completely *dependent* on big donors like most politicians. I won't even try to predict, it'll just be interesting to watch and see.
> their share of wealth has definitely declined dramatically since the 1970's.
Perhaps, but their wealth has increases very significantly. The average American's house today is twice the size of what they could afford in the 1970s. We have far more cars amd other durable goods, plus with technology everybody has a computer in their pocket, etc. Also, the average American Slashdot reader is a "one percenter" - 99% of the world makes less than $22,000, so Americans are doing quite well. *If* people in the US had a sense of perspective, they'd be happy and thankful. Good luck with that, I guess.
> automation will likely devalue the workforce at a faster rate.
Many, many times automation has come to a country - India is a recent example. Over the past 400 years, we've seen hundreds of examples of disruptive automation changing an economy. In every case, people have been worried and in every case it's turned out to be very beneficial. They lose their job picking cotton and get a job packing clothing (made from cheaper cotton) for higher pay. Bookkeepers lose their job writing down numbers in pencil, then learn to use computers instead to become much more productive (and therefore higher paid). We've seen this movie hundreds of times, and we still forget the ending. Maybe this time it'll end differently, but the beginning and the middle are the same as always.
how Jor-El implanted the codex in Kal-El.
Not that I need a reason to rewatch a movie with Diane Lane and Ayelet Zurer in it.
...seems like the most obvious use. This is a Bond film waiting to be made.
"They demonstrate that this technology is also extremely reliable."
Ask anyone who has cancer.
NO, this is not self-replicating. The output is not a viable creatures' DNA thus not going to reproduce on its own, but rather just a wad of organic material that happens to have data encoded in it.
Is the port done yet?
No one is the least bit worried that one of these strands can get out and interact with natural DNA in some way? cancer, viruses, something far worse that we can't even conceive yet? no one?
They said they stored "a full computer operating system, movie, and other files with a total of 2.14 × 10^6 bytes". What the heck kind of movie and OS could that be in 2 mb?
Save the wrong file, and you get a virus. Literally.
Someone went evil overlord with this experiment.
215 petabytes stored in 1 Terabyte HDDs (each weighing 450 gms) comes to approximately 100 tons of HDDs. So 100 tons worth of data is storable in 1 gm of DNA. That is a upgrade in weight by 8 orders of magnitude.