Slashdot Mirror


Scientists Turn Mammalian Cells Into Complex Biocomputers (sciencemag.org)

sciencehabit quotes a report from Science Magazine: Computer hardware is getting a softer side. A research team has come up with a way of genetically engineering the DNA of mammalian cells to carry out complex computations, in effect turning the cells into biocomputers. The group hasn't put those modified cells to work in useful ways yet, but down the road researchers hope the new programming techniques will help improve everything from cancer therapy to on-demand tissues that can replace worn-out body parts. To upgrade their DNA "switches," Wong and his colleagues steered clear of transcription factors and instead switched human kidney cell genes on and off using scissor-like enzymes that selectively cut out snippets of DNA. These enzymes, known as DNA recombinases, recognize two target stretches of DNA, each between 30 to 50 or more base pairs long. When a recombinase finds its target DNA stretches, it cuts out any DNA in between, and stitches the severed ends of the double helix back together. To design genetic circuits, Wong and his colleagues use the conventional cellular machinery that reads out a cell's DNA, transcribes its genes into RNA, and then translates the RNA into proteins. This normal gene-to-protein operation is initiated by another DNA snippet, a promoter, that sits just upstream of a gene. When a promoter is activated, a molecule called RNA polymerase gets to work, marching down the DNA strand and producing an RNA until it reaches another DNA snippet -- a termination sequence -- that tells it to stop. To make one of their simplest circuits, Wong's team inserted four extra snippets of DNA after a promoter. The main one produced green fluorescent protein (GFP), which lights up cells when it is produced. But in front of it was a termination sequence, flanked by two snippets that signaled the DNA recombinase. Wong and his team then inserted another gene in the same cell that made a modified recombinase, activated only when bound to a specific drug; without it, the recombinase wouldn't cut the DNA. When the promoter upstream of the GFP gene was activated, the RNA polymerase ran headfirst into the termination sequence, stopped reading the DNA, and didn't produce the fluorescent protein. But when the drug was added, the recombinase switched on and spliced out the termination sequence that was preventing the RNA polymerase from initiating production of GFP. Voila, the cell lit up. The approach Wong and his colleagues used worked so well that they were able to build 113 different circuits, with a 96.5% success rate. The study has been published in the journal Nature.

37 comments

  1. Mother Brain by Anonymous Coward · · Score: 0

    Won't be long now that we'll have neural-nets learning things left and right. Gonna be hell on the job market, at least until we have descendants born as them.

  2. Design by labnet · · Score: 0

    I see in the distant future, we will eventually reverse engineer the genetic 'object code', to create the source code (I think ID is much more likely than random beneficial mutation); and I wouldn't be surprised if it looks similar to object orientated techniques we currently use.
    Imagine having the source code to life, where you can tinker at a keyboard and 'print out' new DNA. The implications are both scary (eg the ability to create super bugs, or eliminate certain classes of people), to being able to cure genetic disease, to even immortality.

    --
    46137
    1. Re:Design by king+neckbeard · · Score: 2

      When we get life's source code, we'll find that cancer and GOTO are one in the same.

      --
      This is my signature. There are many like it, but this one is mine.
    2. Re:Design by quenda · · Score: 2

      I think we already know that God writes Spaghetti Code beyond our worst nightmares.

    3. Re:Design by Anonymous Coward · · Score: 1

      God IS spaghetti code. Minus the code possibly.

    4. Re:Design by sysrammer · · Score: 4, Funny

      God IS spaghetti code. Minus the code possibly.

      Ramen

      --
      His ignorance covered the whole earth like a blanket, and there was hardly a hole in it anywhere. - Mark Twain
    5. Re:Design by wbr1 · · Score: 3, Funny

      God IS spaghetti code. Minus the code possibly.

      Ramen

      PLease put your colander on in church sir. All praise his noodly goodness!

      --
      Silence is a state of mime.
    6. Re:Design by Anonymous Coward · · Score: 0

      " one in the same." ??? Are you a retard? It's ONE *AND* THE SAME.

    7. Re:Design by tsqr · · Score: 4, Funny

      " one in the same." ??? Are you a retard? It's ONE *AND* THE SAME.

      Give him a break. He's commenting on an article that uses "between 30 to 50 or more." I'd say he's right in the spirit of things. For all intensive purposes, anyway.

    8. Re:Design by SCVonSteroids · · Score: 1

      Give him a break. He's commenting on an article that uses "between 30 to 50 or more." I'd say he's right in the spirit of things. For all intensive purposes, anyway.

      Tents and porpoises?! I fucking love dolphins!

      --
      I tend to rant.
    9. Re:Design by tsqr · · Score: 1

      Give him a break. He's commenting on an article that uses "between 30 to 50 or more." I'd say he's right in the spirit of things. For all intensive purposes, anyway.

      Tents and porpoises?! I fucking love dolphins!

      I had a doll with fins when I was a kid. Well, an action figure really. I think it was Aquaman.

    10. Re:Design by Anonymous Coward · · Score: 0

      For all intensive purposes, anyway.

      Gah! I know you did it on porpoise, but still, it hurts.

  3. Eventually by Anonymous Coward · · Score: 0

    How long until someone ports doom to it?

  4. But will it by Anonymous Coward · · Score: 0

    run Far Cry?

  5. Old School by caferace · · Score: 1

    Imagine a Beowulf Cluster of these.

    1. Re:Old School by mrbester · · Score: 1

      Imagine being able to grow your own Natalie Portman and hot grits.

      --
      "Wait. Something's happening. It's opening up! My God, it's full of apricots!"
    2. Re:Old School by sysrammer · · Score: 1

      In Soviet Russia, computer builds you!

      --
      His ignorance covered the whole earth like a blanket, and there was hardly a hole in it anywhere. - Mark Twain
  6. He called it! by sheramil · · Score: 4, Interesting
    Greg Bear should sue.

    https://en.wikipedia.org/wiki/...

  7. The Paleo are stupid by Anonymous Coward · · Score: 0

    Those who practice the paleo diet are very stupid.

    1. Re: The Paleo are stupid by Anonymous Coward · · Score: 0

      WTF? Nevermind. Type it all out now before you have to have your extremities amputated. You, too, can choose not to be diabetic. #lowcarb #complexmammalianbiocomputercellsmatter

    2. Re: The Paleo are stupid by Anonymous Coward · · Score: 0

      I saw an article that triggered this thought in my mind even though the article had nothing to do with Paleo. So, I thought I would come tweet it here.

  8. Sad! by Anonymous Coward · · Score: 0

    Immigrants stealing the spotlight from hard-thinking Americans...

  9. Hijacking worthless frist psot by fisted · · Score: 1

    I see there's now a story below the story, on the story page as opposed to the front page. And it's all brown.

    Now if you'll excuse me, I have a batch of "Epygi Shares Advice on Hosted vs On-Premise PBX Options" to purchase.

    1. Re:Hijacking worthless frist psot by jenningsthecat · · Score: 1

      Yeah, the amount of advertising that I can't block on this site has been creeping upward. Maybe they think that if they do it slowly enough we won't notice. Next I expect to see Slashdot Beta popping up its empty head.

      At least the adverts are brown, so we can tell at a glance that they're shit and quickly turn our eyes away.

      --
      'The Economy' is a giant Ponzi scheme whose most pitiable suckers are the youngest among us and the yet-unborn.
  10. Re:Unintended consequences by fisted · · Score: 1

    What bizarre reason would that be?

  11. Summary of the actual article by TimothyHollins · · Score: 4, Informative

    Reading TFA explains my confusion when reading the summary.

    1. Nothing in the summary is new, nor even remotely new. Splicing via recombinase has been done a long time ago, and the biology howto isn't anything novel either.
    2. The article is actually titled "Large-scale design of robust genetic circuits with multiple inputs and outputs for mammalian cells". The novel component is that the authors claim their circuitry construction is easier and more robust than previous approaches that required multi-layered edits for the same effects. Whether or not this is true I cannot say. The validation experiments are a bunch of these edits, one part creating logical circuits and one part creating on/off switches for stuff biologists like, such as CRISPR-Cas9, or a whole slew of fluorescent proteins (they look great in a microscope).
    3. The general take-away is that gene-editing has become so easy and cheap that these studies and uses are becoming feasible.

  12. Oblig. by Narcocide · · Score: 1

    But does it run Linux?

  13. cannabis oil by Anonymous Coward · · Score: 0

    Here is my story. greatful

    My wife was diagnosed with a cancer, ( before i learnt of Rick Simpsons oil / RSO ) the hospital said to do chemotherapy and radiotherapy.. she did.. and went through a lot.. but no cure, after a while the doctors said the cancer was spreading and we could look for alternatives.. i searched the internet and found out about the oil.. asked alot of questions.. watched the videos etc.. we made the oil our selves but it couldn't just work out we were doing more harm than good and the cancer was still there spreading, i searched more on the internet i found a testimony on how a lady got the oil via an email, ricksimpsoncannabisoil96@gmail.com immediately copied the email: i wrote to this very email ricksimpsoncannabisoil96@gmail.com and in an hour later i got a reply back asking me some few questions, and enlightened me on how to get the oil in the next 48hours, i placed my order and in the next 48hours the medication oil got to us. immediately my wife started using the oil, it been two months now, since my wife has been using the medication oil and the cancerous problems are gone this very fact was clarified by the doctor.

    i put up this piece of testimony for the sake of those once who need this oil to please don't die in silence their is a cure for your cancer today email: ricksimpsoncannabisoil96@gmail.com and get the oil.

  14. End of days by Anonymous Coward · · Score: 0

    Hardware becoming software.

    Human sacrifice.

    Dog and cats living together.

    Mass hysteria.

  15. Bioneural Circuitry by Anonymous Coward · · Score: 0

    Next up. Folding Nacelles and an obnoxious captain.

  16. Comment by WallyL · · Score: 1

    They were so preoccupied with whether or not they could that they didn't stop to think if they should.

  17. Beware a computer virus running through by Ulfilas2000 · · Score: 1

    this... what could possibly go wrong?

    1. Re:Beware a computer virus running through by phozz+bare · · Score: 1

      this... what could possibly go wong?

      FTFY.

    2. Re: Beware a computer virus running through by SCVonSteroids · · Score: 1

      Oh you clever, clever little bastard you.

      --
      I tend to rant.
  18. Antivirus for the biocomputer by Anonymous Coward · · Score: 0

    With this, all the big pharma companies just became antivirus companies!