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New Bacterium Could Herald Bio-Batteries

Clever Pun writes "According to this BBC article, a newly discovered bacterium is able to convert 'uranium and other radionuclides dissolved in water to solid compounds that can be extracted.' It reduces (adds electrons to) positively charged metal ions, making them insoluble in water (making them easier to clean up), which creates small charges of electricity. It has been speculated that this bacterium could potentially be used in a sort of bio-battery. Matrix v0.1b, anyone?"

60 comments

  1. Alpha? by Feztaa · · Score: 0, Redundant

    Matrix v0.1b, anyone?

    If this is the beta, what was the alpha?

    1. Re:Alpha? by ()vnorby() · · Score: 1

      I think that it was a joke.

      --
      -Vib, videogame freelancer for news0r.com, videogame.net, and vnorby.tk
    2. Re:Alpha? by gl4ss · · Score: 1

      the alpha was your..............

      ok going little low there.

      the matrix 'joke' was sooo lame though.. it's not like this had anything to do with it.

      --
      world was created 5 seconds before this post as it is.
    3. Re:Alpha? by Anonymous Coward · · Score: 0

      Well, keeping with the movie motif, I would say it was uhm, the sixth spirit?
      (Okay, haven't watched the lame final fantasy movie in a while, can't remember the correct number. But I'm posting AC anyway, so it's not like anybody's even reading this.)

    4. Re:Alpha? by Clever+Pun · · Score: 1

      the matrix 'joke' was sooo lame though.. it's not like this had anything to do with it.

      well.....i saw a similarity in concept, and noticed that most other submissions that got turned into stories had clever quips at the ends, and that was the best i could come up with. it's finals week. leave me alone! ;)

  2. heard this on NPR by jaredmauch · · Score: 5, Informative

    This was covered on NPR this past Friday. You can probally find some archive of it if you're interested in hearing it.. try here. It sounded interesting but not quite viable yet based on what I heard.

  3. Sugar eating bacteria battery by G4from128k · · Score: 4, Interesting

    This sugar eating bacteria battery looks more promising. Runs on sugar and has an 80% conversion efficiency.

    --
    Two wrongs don't make a right, but three lefts do.
  4. Who cares... by Kobal · · Score: 3, Insightful

    about directly producing electricity when you could probably extract uranium straight from sea water with the help of these babies? Probably even cheaper than buying it from third world countries in the long run.

    1. Re:Who cares... by UnknowingFool · · Score: 3, Interesting

      There's a difference between a side benefit and a direct purpose. The bacteria's greatest potential is in the area of environmental clean up. The ability to extract uranium can help in many polluted and toxic areas. The fact that it can generate electricity is a bonus. Sure, it can be adapted for other purposes but that is not the main reason that it is being developed.

      --
      Well, there's spam egg sausage and spam, that's not got much spam in it.
    2. Re:Who cares... by Nucleon500 · · Score: 3, Interesting

      I can think of one other use for heavy-metal extracting bacteria - medicine. Could they be used to counteract lead and mercury poisoning?

    3. Re:Who cares... by Anonymous Coward · · Score: 1, Informative

      From what I understand, geobacteria are pretty much everywhere in the soil. The key is feeding them enough vinegar to get the population to bloom so that you can have a sufficient quantity. They have an affinity for various metals, including iron. But the population levels are typically so low that they have very little effect on the soil.

      There are a few issues to overcome in a medical application of their properties. One is that human tissue is not really a hospitible environment for them. Another is how to keep them from mucking with the iron in a patient's blood.

      Probably some setup similar to kidney dialysis or apheresis would get past the first. More genetic analysis may yield a candidate that doesn't particularly go for iron. Stitch the appropriate bit of DNA from that one into one that likes lead/mercury/whatever, and you may be past the second.

  5. Evolution by ()vnorby() · · Score: 3, Interesting

    Not saying evolution didnt happen, but someone explain how an organism like this bacterium could evolve due to "survival of the fittest?"
    It seems quite impossible to understand how a bacterium could have mutations that allow it to "convert 'uranium and other radionuclides dissolved in water to solid compounds that can be extracted.' It reduces (adds electrons to) positively charged metal ions, making them insoluble in water (making them easier to clean up), which creates small charges of electricity."

    --
    -Vib, videogame freelancer for news0r.com, videogame.net, and vnorby.tk
    1. Re:Evolution by Kobal · · Score: 4, Informative

      Actually, there are quite a few species of bacteria who use this kind of cycle to get their energy. Not a bad thing to colonize layers where respiration won't help. And the ability to specifically reduce heavy metal ions probably comes, as the article implies, from mutations on cytochrome reductases genes.

    2. Re:Evolution by ()vnorby() · · Score: 2, Interesting

      If there are other species of bacteria that we know can do this, why is this one special? Couldn't we theoretically use any kind of bacteria that creates charges of electricity using this type of cycle in a bio-battery? There might be a bacteria that gets their energy from a more common metal ion.

      --
      -Vib, videogame freelancer for news0r.com, videogame.net, and vnorby.tk
    3. Re:Evolution by smoondog · · Score: 1

      Most of biology gets its energy from passing electrons around from higher energy states to lower energy states, including you. Remember the NASA mars life claims from 1997 (or whenever), they argued that the rock had nodes of biologically derived magnetite. Similar stuff.

      -Sean

    4. Re:Evolution by Smidge204 · · Score: 4, Informative

      There is nothing special about this particular bug, except that it was used to gain some insight on how these kinds of bacteria work their magic.

      The whole battery idea comes from how we now understand that the "c-type cytochromes" add electrons to the heavy metal ions to newtralize them, and create a small electrical current in the process.

      Yes, in theory I would imagine any bacteria that has similar mechanics could be used.

      This little fella jsut happened to get the spotlight because it was the first to be studied in depth.

      Ref. http://www.geobacter.org/ for some more info

      You might also want to read through the talk.origins archive, since I think you might not fully understand how evolution works. (Hint: "survival of the fittest" is a really poor way to describe it.)
      =Smidge=

    5. Re:Evolution by ()vnorby() · · Score: 1

      "You might also want to read through the talk.origins archive, since I think you might not fully understand how evolution works. (Hint: "survival of the fittest" is a really poor way to describe it.)"
      Hey, its the way my biology teacher used to explain it, so yes, i probably don't fully understand how it works.

      --
      -Vib, videogame freelancer for news0r.com, videogame.net, and vnorby.tk
    6. Re:Evolution by Smidge204 · · Score: 1

      That's why I gave you the link... since you seem interested, I thought it might be informative for you.

      Just trying to help :P
      =Smidge=

    7. Re:Evolution by CXI · · Score: 3, Insightful

      Not saying evolution didnt happen, but someone explain how an organism like this bacterium could evolve due to "survival of the fittest?"

      It's pretty simple really. This type of bacterium is decended from a line which figured out how to live on a new type of food that others could not. That's evolution at work. The fact that it "convert[s] 'uranium and other radionuclides dissolved in water to solid compounds that can be extracted'" is a nice side effect for us, but that has nothing to do with evolution.

    8. Re:Evolution by splerdu · · Score: 2, Informative

      If something can be eaten, it will be. Survival of the fittest doesn't only mean competition with peers, it also means adapting to make use of resources.. If this bacteria evolved because of exposure to a redionuclide rich environment, then that's evolution at work for you.

    9. Re:Evolution by A55M0NKEY · · Score: 1

      Iron reducing bacteria that live in anerobic conditions need somewhere for electrons to go in order to have a metabolism. Basically for them these metals are food, and the methane/hydrogen etc around them is the 'air'. The reduced metals are then edible for other bacteria if the surrounding environment should become aerobic. If it wasn't for bacteria metabolising metals we would probably have no ores to mine on earth and still be in the stone age.

      --

      Eat at Joe's.

    10. Re:Evolution by the_2nd_coming · · Score: 2, Funny

      well one day a bacterium came along and said "gee, I have no niche I wish there was some where I could specialize"

      then the bacterium noticed a glowing piece of rock that was not being touched by anything.

      "hmm" said the bacterium, "I could eat that thing"

      and so became the Uranium eating bacterium.

      --



      I am the Alpha and the Omega-3
  6. What I want to see by Hythlodaeus · · Score: 2, Insightful

    What I want to see is a machine that operates
    carbon + electricty -> food
    in less labor and land area per calorie than farming plants.

    No one would want to eat it now, especially not the organic farming fans (mmm... organic parasites, yum!), but don't forget we're multiplying exponentially still, and you can only pile on so much fertilizer.

    --
    For great justice.
    1. Re:What I want to see by iggymanz · · Score: 2, Insightful

      Hard to beat very low cost of 100+ bushels of corn per acre. actually, with the revised U.N. estimates of 9 billion people by 2300 a.d., it seems we may not have the "exponential" growth in population we once thought we had. Farming the land & oceans for 50% more people, we probably can do that, just need to be a little smarter about it. The main problem is that we aren't yet managing/farming the oceans yet, just plundering.

    2. Re:What I want to see by the_2nd_coming · · Score: 1

      hell yes we can do that. if you give every person on earth .28 acres (the amount needed for shelter and personal food production) we could all fit inside texas.

      --



      I am the Alpha and the Omega-3
    3. Re:What I want to see by penguin7of9 · · Score: 1

      it seems we may not have the "exponential" growth in population we once thought we had.

      What do you mean "thought"? We once had exponential growth. But exponential growth in biological systems sooner or later must necessarily level off. This is all standard population biology.

      The only question is why economists still cling to the absurd notion that economic growth can go on forever.

    4. Re:What I want to see by iggymanz · · Score: 1

      When I was young, way back in the misty depths of time, it was not uncommon to hear of 9 billion people by 2050

  7. Web site by RML · · Score: 5, Informative

    Quite a lot of information about this bacteria (Geobacter sulfurreducens) can be found at the Geobacter project home page.

    --
    Human/Ranger/Zangband
  8. My Batteries Died... by Sunlighter · · Score: 5, Funny

    That phrase will have new meaning...

    --
    Sunlit World Scheme. Weird and different.
  9. Exploitation... by dmayle · · Score: 1

    Call me a troll, but I think it's sad that this is going to spark a lot of "Bio-battery" VC money. It may just be me, but I think we should be investing in figuring out how this stuff works, so we can do it on our own without the bacteria, rather than trying to exploit this bacteria in ways that will definitely result in a living creature being put in an environment it wasn't intended for, with the possibility of mutation to adapt to that environment.

    1. Re:Exploitation... by YouHaveSnail · · Score: 1

      result in a living creature being put in an environment it wasn't intended for

      Intended by whom?

  10. oh no you didn't by Anonymous Coward · · Score: 1, Funny

    add electrons to the heavy metal ions to newtralize them

    *record scraaaaatch*

    "newtralize"?

    oh, man. that's a new low.

  11. NPR Link by lordDallan · · Score: 4, Informative

    The page linking to the NPR audio is here

  12. It didn't by gacp · · Score: 2, Informative


    Forget Neodarwinism: it's a myth, and dead wrong. Biological evolution does not happen that way. In short: autonomous systems cannot be instructed by the environment, so there can be no such thing as Natural Selection. The reason Neodarwinism (which is not the same as evolution!) is still the dominant paradigm are really very very close to the reason Micro$oft dominates the computer market. FUD included: I'm supposed to be a "cryptocreationist" because I demand this so-called "theory" to be put to the test [it never was, go check it].




    Evolutionary biology (the non-Micro$oft-like kind, that is) has long left Darwin behind, decades ago.
    Sorry this Science Inc. had you fooled.


    --
    ``L'imagination au povoir.''
    1. Re:It didn't by the_2nd_coming · · Score: 1

      so how does Biology explain evolution? sure Darwin's mechanisms are old and limited by the tools at his disposal, but how does the environment not have an effect on the evolution of an organism?

      --



      I am the Alpha and the Omega-3
    2. Re:It didn't by Quelain · · Score: 1

      "autonomous systems cannot be instructed by the environment, so there can be no such thing as Natural Selection"

      What do you mean by this exactly?

      Do you realise that evolution applies to populations, not individuals?

      --
      Cthulhu loves you.
  13. ProtoCulture? by Zarf · · Score: 2, Interesting

    I heard about this first on Science Friday on the December 12th show. When I heard them mention the bacteria making electricity I though of the "Proto-Culture" from Robotech. When I was a kid I used to think it was an electricity producing life-form that they found on the SDF-1 ... of course my memories are mostly of Robotech season three... "Genesis Climber Mospeada"

    It would be hilarious if science fact would follow this particular fiction and lead to...
    <Announcer Voice>
    "the awesome power of RoboTech!"
    </Announcer Voice>

    --
    [signature]
  14. Energy Yields too low by spin2cool · · Score: 5, Insightful

    I have my doubts that this sort of bio-battery will ever be useful on a widespread, large scale.

    Even anaerobic resiration by the most efficient organisms yields under 50% of the potential energy in their food. Secondary reactions like this typically occur at a much slower rate than life-sustaining reactions. What this means is that a fairly high amount of nutrients will have to be supplied, and that the resulting current generated will be relatively small compared to the potential energy sent in.

    I guess what I'm saying here is "don't expect a miracle bio-powered car from this."

    These bacteria will no doubt be useful in cleanup of contaminated sites, though. Perhaps soil could be placed into large decontamination devices, and the resulting electricity could be used for low-output pumps that drip nutrients into the chamber. Then you'd have a useful, self-powered detox device.

    1. Re:Energy Yields too low by spin2cool · · Score: 2, Insightful

      correction: Aerobic resiration by the most efficient organisms yields under 50% of the potential energy in their food.

      Anaerobic yields are typically much lower.

  15. By gosh... by splerdu · · Score: 2, Interesting

    environment it wasn't intended for

    If someone hooks you up with a life's supply of food in exchange for taking your crap what would you do?

    I'd say the bacteria would be happy being in a battery.. They get to feed and we get our volts. It's a win-win situation!

    1. Re:By gosh... by the_2nd_coming · · Score: 1

      slimy green alien: Human sit here on this porcelain thrown with your pants off so we can feed you all the food you like.

      Homer: mmmmm alien food.....

      --



      I am the Alpha and the Omega-3
  16. Really not a battery by juushin · · Score: 2, Informative

    Organisms that reduce other metals have been known for a long time - for example mercury. There are already programs using these sorts of bioorganisms for detoxifying heavy metal-containing soil and water.

  17. Applications to Uranium 235 Enrichment by A55M0NKEY · · Score: 3, Insightful
    A while back there was an article about 2 geophysiscists ( sp ) who found iron isotope ratios were affected by being metabolized by bacteria.

    Their bacteria Shenwala alga, reduces the iron from Fe(III) to Fe(II) ( uses the iron as oxygen in it's metabolism ) . Other bacteria ( Desulfovibrio Ferrireducens ( sp ) ) have shown to reduce uranium from U(VI) to the less soluable U(IV) and have been used to clean up mine tailing drainage by making all the uranium insoluable.

    Since any chemical reaction that is not allowed to go to completion causes isotopic enrichment ( presumably the lighter isotope is the preferred reactant ) and metabolism by bacteria is really just a chemical reaction there is some enrichment there.

    Other bacteria which oxidize iron like Thiobacillus Ferrooxidans have been used to leach uranium out of ores by oxidizing it to a soluable state.

    Since any chemical reaction not completed results in some isotopic enrichment one might enrich U235 by, feeding the dissolved Uranium oxide produced by Thiobacillus Ferrooxidans from raw ore to the anaerobic Desulfovibrio ferrireducens where it would reprecipitate. Then feed the precipitated uranium oxide back to thiobacillus ferrooxidans to produce more uranium liquor to feed to desulfovibrio ferrireducens forming cascaded stages which would gradually enrich the U235 until it was useful for fuel rods etc.

    The question is: how much energy does this take, and how efficient is the enrichment? How much sugar/light/whatever-these-bugs-eat do you need to feed them per stage and is it more economical energy-wise than other uranium enrichment methods already in use?

    A home experimenter interested in developing this into a patentable process would be breaking the law by enriching uranium. After learning how to grow these beasties ( I'm sure they'd sell them to you since they are not dangerous ) you would have to measure the enrichment achieved bu sending a sample off to a mass spectometry lab. It would behove one to send the depleted uranium rather than the enriched uranium so as not to piss anyone off ( hope it wasn't the heavy isotope the bugs liked better! ). Then you could measure how much it costs you to feed the bacteria per kilo of metabolized uranium and compare it to the cost of existing enrichment methods by looking it up, and decide if you have something worth patenting. Profit.

    --

    Eat at Joe's.

    1. Re:Applications to Uranium 235 Enrichment by G4from128k · · Score: 1

      Since any chemical reaction not completed results in some isotopic enrichment one might enrich U235 by, feeding the dissolved Uranium oxide produced by Thiobacillus Ferrooxidans from raw ore to the anaerobic Desulfovibrio ferrireducens where it would reprecipitate. Then feed the precipitated uranium oxide back to thiobacillus ferrooxidans to produce more uranium liquor to feed to desulfovibrio ferrireducens forming cascaded stages which would gradually enrich the U235 until it was useful for fuel rods etc.

      WHOA DUDE! That's a very very interesting idea. AFAIK, isotopic enrichment is very common in biological systems. In fact, isotopic ratios are used to determine if the creature was a herbivore or carnivore (see this for more info). My understanding is that the differences in nuclear weight of different isotopes change the reaction kinetics and can interfere with enzyme dynamics. Since U-238 is not much different from U-235 in mass (compared to the differences among Iron or Oxygen isotopes) the enrichment might be modest. On the other hand, I suspect that one could artificailly evolve the bacteria for their enrichment prowess.

      You have suggested a very interesting approach to what is often a very hard problem. Like you, I smell profit, but it may not come from uranium enrichment, but from carbon enrichment. Apparently, isotopically pure Carbon-12 should create diamonds (think semiconductors) with twice the thermal conductivity of mixed carbon diamonds. If biological enrichment were cheap enough, one could become a monopolist supplier of C-12 for high performance semiconductor manufacturing.

      --
      Two wrongs don't make a right, but three lefts do.
  18. third world countries? by adoll · · Score: 1

    >Probably even cheaper than buying it from third world countries in the long run.

    Largest uranium exporter to the US market is Canada. Largest uranium deposit currently being mined in Olympic Dam in Australia. Doubt that either of these qualify as 3rd world since both provide free, modern health care to their citizens.

    -AD
    ps. IMAME (I am a mining engineer)

    1. Re:third world countries? by Kobal · · Score: 1

      Don't forget not everyone here comes from anglo countries. France still mainly buys from Canada, and I'm pretty sure you know of the COGEMA. But the commercial relationship with Australia in the field has been strained in the last years. Since Gabon will shortly be out of the picture, this leaves the most interesting partner for us, politically speaking: Niger, not exactly a "first world" country. Yes, unlike Irak, we do import from Niger. ps. IANAME (passed the entrance exam, but forgone for a better school).

  19. Re: by A55M0NKEY · · Score: 1
    --

    Eat at Joe's.

  20. population, schmulation by gacp · · Score: 1

    First: WHAT is a "population"? Do answer this if you can, don't just dodge the question. You must be able to define every term you use, like "species", "organism", &c. No cheating!

    Do *you* realize that evolution applies to lineages, not to populations? If evolution is the change in ontogeny along a phylogeny---where does the population enters the picture? And you never mentioned generations, conditio sine qua non for evolution.

    Good luck defining population, species, organism, &c.---you'll need it. If you can't, you might be interested in going where true science is going, leaving Science, Inc. for what I call "Versio2".

    --
    ``L'imagination au povoir.''
    1. Re:population, schmulation by Quelain · · Score: 1

      Sorry, but it's your statement that is truly vague, so I asked for clarification.

      Population is not a difficult concept. You have one animal, that's not a population, it's an individual. You have 100 of these same animals, it's a population. If you have only 10, 5 or 2 animals, it's probably not a viable population, but is a population nevertheless.

      Yes, but can you have a lineage without a population? Sure, an immortal species that doesn't reproduce will not evolve. That's getting silly though don't you think?

      --
      Cthulhu loves you.
    2. Re:population, schmulation by gacp · · Score: 1

      Population IS a difficult concept. Because you'll have to define species before, see? Or would you call organisms of != species members of the same population? And... what is an organism? Again, no cheating! No circular defs. No pseudo-defs by characteristics. DEFINE those terms!

      >Yes, but can you have a lineage without a population?

      Actually, yes. Like the Sith Lords, a parent and a child. Or perhaps you could call that a pop of 2? Not a very likely scenario, of course.

      But the point is that "population" is a non-term, undefined, used to *hide* ignorance with jargon. Just like "species". Or "natural selection", "selective pressures", "mutation", "genetics", "development", "sex", "reproduccion", "fitness", and many many more. Do try to define them, and you'll see. You go in circles, without truly explaining anything. Is that science? Not by my reckoning, it's sophystry. Of course, sophuystry will get you anywhere in academia if you have the right "godfathers".

      No, sorry, it's not me who is vague, but mainstream biology, and it's only this vageness plus some very brutal power abuse in academia what still sustain the Darwinian myth as the dominant view.

      Still, some scientists---most of them *outside* Science, Inc. do try to undertand evolution, without falling for the bullshit troika of Darwinism-Intelligent Design-Creationsim, which are not really very different if you actually compare them. And we have left Darwin behind, long ago (it was long before *my* time, in fact).

      --
      ``L'imagination au povoir.''
    3. Re:population, schmulation by Quelain · · Score: 1

      No, it's not difficult, I just defined it in very simple language for you.

      It then seems to me that by your standards, 'lineage' becomes a non-term also. Obviously your theory is just going in circles.

      Certainly everything is not black and white, especially in biology, and we define terms which don't apply to all situations. Why do you think this means we can't discover anything useful even if this is the case.

      How about a thought experiment:

      Take 500 common house cats.
      Build a very large cage for them (1km^2).
      Arrange a separate facility for breeding large rats as a food source for the cats.
      Sequence the DNA of each cat.
      Sequence the DNA of any kittens born in the cage.
      Continue this monitoring for several thousand years.
      Finally, analyse the DNA data for evidence of evolution.

      Where is the vagueness here? Did I use any of the terms you are opposed to?

      You might think it's a silly idea, but it's not too far from work done with fruit-flies or bacteria.

      Got a name for one of these scientists?

      I do actually think that huge amounts of evidence gathered by many researchers is quite different to an idea that some invisible being poofed everything into existence in the recent past. The ID whackos are just trying to associate themselves with real science for the purpose of getting their religion into US public schools. That may sound like a paranoid conspiracy theory, but would you believe they have a website detailing it:

      http://www.antievolution.org/features/wedge.html

      --
      Cthulhu loves you.
  21. environment by gacp · · Score: 1

    I have only a couple of min:

    >so how does Biology explain evolution?

    molecular autopoiesis (=life) + reproduction = evolution

    >but how does the environment not have an effect on the evolution of an organism?

    1. There is no such thing as The Environment. Each organism has its own environment (i.e. the rest of the universe that does not take part in the autopoietical process under consideration), all environment are != (by def).

    2. The effect of the environment on the organism is never and can never be instructional (what to do). The organism DOES WHATEVER IT PLEASES unless this is incompatible with its [org/env] relationship, in which case the org is not more (dies). So the only feedback is DEATH.

    In fact, you can apply the Darwinian model to non-living system, you can---so Darwinism says---BIOlogical evolution *whithout* life! If it does not involve *life*, it's not biology, at best it's some other more general science like chemistry or physiscs. [Darwinism is not really science, since it cannot be put to a test; it's mythology]

    Ergo, Darwinism is not even biology, and not even science. [Weird the truth, isn't it, yet the truth :) ] Yes, Darwinism SHOULD be taught side by side with Creationism, but not as part of the science curriculum but under Comparative Mythology or Comparative Theology or some such.

    Meanwhile, science, the real search for truth by experimentation, has left Science Inc. for something new, what I call Versio2. See you on the other side!

    --
    ``L'imagination au povoir.''
  22. evolution != evolution by natural selection by gacp · · Score: 1

    lineage:: two or more molecular autopoietical systems (=organisms) conected by a (non-branching) line of descent (historical connection). Gets really interesting when you include metacellulars which (amost) invariable have gametic fusion, which gives you reticulation of lineages, but still you can follow lineages.

    Where is the circle? Everything is defined, no cheating.

    About the cats: oh golly, I know you can do that with bacteria, and you won't need kiloyears. Do you think I don't know about that? I had to describe and even invent that kind of experiment, in course after course on 'evolution'. So what? There is no doubt that evolution happens. The point is HOW does it happens, and WHY. By this mythical Natural Selection? *That*'s the point. I think you---as both the Darwinians and the Creationist foster---confuse Evolution with (Neo)Darwinism. (Neo)Darwinism in NOT the Theory of Evolution (which predates Darwin by millenia), but the Theory of Evolution by Natural Selection. Now, EBNS has *never* been put to the test. Check the refs. (Hint: evidence in support of evolution does not count---we are not testing that, are we?).

    About the vageness: in your experiment. First, you are NOT testing for EBNS. And you are cheating: how can you tell that "cats" and "rats" are one population each? How can you even tell that there is a species of each? WHAT is a species and a population?

    About the ID whackos. I know all about them, as well as the Creation 'Scientists'. Not that much diff from the Cabal of the Neodarwinian 'Scientists'. They all have the same bases E.g. complexity cannot arise alone. ND says its caused by NS (how?). ID says it's aliens (halfway NS and God). CS says it was God. Biologists say its a system transition, an emergent from lineages of autopoietical systems self-organizing in non-reversible ways. This is *predicted* by theory, it's a consequence of reproducion. Now this last CAN be tested, on a computer for example, and *does* happen.

    Same of intelligence in evolution. ND denies it, it's all random. ID says it's the aliens. CS says its God. All 3 agree that control cannot emerge from simple systems, it comes from outside or it's absent. Biologists say simple systems interacting CAN give rise to very complex behaviours (e.g. a brain!) so evolution MAY be intelligent, but if so there is not need for the intelligence to be external, and there is no requirment for the all-random evolution the ND insist on.

    The list is long.

    About the huge ammount of evidence. Sift throug it. Evidence? Yes, for Evolution. Tons of it. I have some myself. But NONE for the mythical NS. Give me the ref of ONE (1) falsation test for EBNS. That is, evolution by other means (H0) is REJECTED and we must accept the alternative (H1) evolution happened by Natural Selection. Name just ONE.

    After you spend a couple of weeks and FAIL, please do think how this can be. No evidence whatsoever? None? For such a big macho branch of science. No evidence? Isn't this fishy? Does it not smell rotten? Is this SCIENCE at all? Or just "ivory-tower witch-doctoring", as Gibson put it?

    After that, start reading some real biology.

    --
    ``L'imagination au povoir.''
    1. Re:evolution != evolution by natural selection by Quelain · · Score: 1

      Yes, I was being facetious really, but I don't see that your definition for lineage is any less circular than the usual definitions for population, species etc. You did use the term organisms, no? Why then can't I say that a species is a set of organisms which interbreed?

      The point of my cat experiment was that it can be explained and carried out without reference to or even a need for understanding of populations, species, organisms etc.

      I dont think anyone is saying evolution is *caused* by NS, rather, the path that it takes is guided by NS. If it appears that NS is actually driving evolution, that's because the path taken by 'unguided' evolution is going to go around and around in circles, whereas with NS, the "path" will likely lead somewhere away from the 'starting point'.

      If you have looked at emergent behaviour on computers, how about simulations of evolution? Can you point me to one which works without some form of selection? I have done some genetic algorithm stuff, and I can't see how it would have worked without selection. I count that as evidence for NS.

      I don't think ND says 'it's all random', more like, 'it's a filter for randomness'. It's the difference between roulette and draw poker.

      No biologist will tell you that NS is the only factor in evolution, just that in most cases it's probably the strongest factor.

      "Searched English and Finnish and Russian pages for evidence for natural selection. Results 1 - 20 of about 1,610,000. Search took 0.21 seconds."

      0.21 seconds < 2 weeks

      --
      Cthulhu loves you.
    2. Re:evolution != evolution by natural selection by gacp · · Score: 1

      > Yes, I was being facetious really, but I don't see that your definition for lineage is any less circular than the usual definitions for population, species etc. You did use the term organisms, no?

      I used organism AND defined it. Organism:: a molecular autopoietical system, of first (parts are mere molecules) or second order (parts are themselves organisms e.g. you and me).

      >Why then can't I say that a species is a set of organisms which interbreed?

      No good. No good AT ALL. Sorry, I *am* working on this, sorting species and doing phylogeny, and even more, trying to actually understand what species really are, and how speciation happens. The issue is long to discuss, so I give you a few white crows:

      1. Bacteria. Never interbreed.

      2. != species DO interbreed with fertile F1 and subsequent gens. YET they are not the same species [this is typical of the fishes I'm woring on]. And what about those that *could* interbreed but don't.

      3. What about species of partenogenic metacellulars? Not even sex. Arent' they species?

      >The point of my cat experiment was that it can be explained and carried out without reference to or even a need for understanding of populations, species, organisms etc.

      Yes, and my point is that you can draw no conclusions from the experiment as concerning populations, species, organisms, &c. GIGO research?

      >No biologist will tell you that NS is the only factor in evolution, just that in most cases it's probably the strongest factor.

      Agreed. What we are saying is that NS is not the cause of the process of biological evolution. It simple DOES NOT HAPPEN, not as cause or mechanism. You can argue that NS can be def as the *result* of bio evol---and I'd agree---but that turns the argument on its head. If what is called Natural Selection is the selection resulting from evolution, then what are the cause and the mechanism of this evolution?

      >I don't think ND says 'it's all random', more like, 'it's a filter for randomness'. It's the difference between roulette and draw poker.

      So, where does the criteria for sorting comes from? God? The aliens? Do try to program it! Again, don't cheat. Don't come to me with tautological "higher fitness". Where does this fitness come from? Program this. No fixed values out of the blue, no omniscient agent that could not exist in nature (God, aliens, kernel, whatever). Then try to simulate NS. Won't work. Please let me know if you were to accomplish this! BTW: see how again ND, creationists, and ID are similar deep at the roots?

      [evidence for NS]

      Oh god! You used a search engine! Try UFO. Or God. Or Santa.

      Sure, NDs *claim* they have evidence of NS, lots of it. But go and actually look at it. You will see that it's either evidence of *evolution* alone, or some sophystry. I meant a honest falsation test for H0: this evolution happens with no NS, vs. H1: this evolution must have happened by NS. Then reject H0, and be forced to accept the alternative hypothesis H1: this system could not have evoluved if not by Natural Selection.

      One ref. Any system you choose. Any trait. Any species. Any time frame. ONE SINGLE PIECE OF EVIDENCE FOR NATURAL SELECTION AS THE CAUSE OF A SINGLE EVOLUTIONARY EVENT. ONE (1).

      And remember, there *are* biologists that are actually trying to undertand evolution. But you won't find them in Science, Inc, any more that you will find Linux developers at M$.

      --
      ``L'imagination au povoir.''
    3. Re:evolution != evolution by natural selection by Quelain · · Score: 1

      "Organism:: a molecular autopoietical system, of first (parts are mere molecules) or second order (parts are themselves organisms e.g. you and me)."

      What about energy beings from Proxima Centauri?

      Yes, I know my experiment was crap, but I'm sure you could learn something from it. What you would learn is that differences arise in the cat DNA as time passes, some of these differences are preserved, others are not. Compare phenotypes of preserved differences to non-preserved, and draw some conclusions. What you learn is known to apply to cats. Only later does someone need to come along and say, maybe this happens everywhere, not just with cats. Then populations, species etc etc come in to play.

      How about this "study":

      "In South Africa there is a large valley used for wind power generation. This valley also has a large giraffe population. Someone notices that field records kept by giraffe biologists in the region indicate a trend towards shorter necks. Also, windmill maintenance personnel report frequent "incidents" involving giraffes and windmills. The maintenance personnel also happen to have stored the damaged blade tips from these incidents, from which sufficient amounts of DNA can be recovered to tie individuals involved to DNA samples gathered by field biologists. A study of single nucleotide polymorphisms in surviving giraffes reveals...."

      If this were to actually happen, would you say that something other than "natural" selection was at work? If giraffe neck length is known to be affected by a single base pair mutation, and windmills are an ideal 'filter' for neck length, why is there any cause to invoke some unknown factor?

      Suppose Greenpeace demands that the area around each windmill is fenced off. What will the next study reveal? How do you explain the effect of the fences on evolution under your hypothesis? If the fence isn't removing a factor for selection, what is really happening?

      So far as my 'simulation' goes, yes, I do have a fitness function. I actually use many different fitness functions depending on what I want to achieve at the time. The evolution occurs in a direction towards satisfying whichever fitness function I choose. If I let some random process choose the fitness function, it will still work.
      IMHO, this looks like evidence that 'natural' selection has a measurable affect. What is 'causing' the evolution here is inaccurate replication. I use 'sexual' reproduction, with crossover and mutation, but no deletions or duplications (unless caused by crossover). All this is all totally random. What is not random is the selection, which preserves 'better' individuals, and eliminates 'worse' ones.

      I would contend that some of the more 'magical' abilities of evolution are result of evolved 'evolvability'. That is, if a species is here today after 3 billion years, it's ancestors were able to contend with many diffent and varied 'fitness functions', so what we see today is a system which is very good at evolving. I think the fact that this system is so good is what makes you think something else is at work.

      Regarding falsification, I'm quite sure anything at all can evolve with no natural selection, but it is statistically unlikely. It's the *rate* of evolution that is improved by NS.

      If you want to point to an undeniable example of 'NS is the only possible cause for this observation', I suppose that's difficult. A cat might starve to death because it wasn't quite fast enough to catch a rat. It's 'slow' genes are not passed on, leading to a greater frequency of the 'fast' gene in the population. If you ran the experiment again, you obviously can't have the same cat again, and you can't guarantee similar performance from a different rat. Given the ability to perfectly duplicate organisms, I think it would be possible to devise a control group which might satisfy you.

      If you want to know what is the criteria for sorting, I say it's the entire environment, including the individual being 'filtered'. Some aspects of that

      --
      Cthulhu loves you.
    4. Re:evolution != evolution by natural selection by gacp · · Score: 1

      >What about energy beings from Proxima Centauri?

      Dunno man, never been there? What kind of enengy? If that kind of energy can sustain an autopoietical dymanmics, well, I won't call that "life", but well deffinitely have to add another category next to "life" and "symbolic autopoiesis".

      >Yes, I know my experiment was crap, but I'm sure you could learn something from it.

      How NOT to design an experiment? :-P

      >A study of single nucleotide polymorphisms in surviving giraffes reveals...."

      Gee, some effect for that dammed nucleotide. Can happen, of course. But... you told me of a correlation. How can you tell that this A turned G does *cause* shorter necks. Mechanism, please?
      And please do remember that giraffes are not bacteria but excedingly complex metacellulars, and that there is far more to genetics than protein synthesis. [Probably more than DNA, in fact.]

      > would you say that something other than "natural" selection was at work?

      I'd say evolution took place. The result of if you can describe as a selection, and make it fit to the effect of the introduction of windmills. [Again, correlation.]

      >why is there any cause to invoke some unknown factor?

      Exactly! This "selection" is predicted to occur, by reprocuction and inability to survive of some lineages those with longer neck AND dumb enough to mistake windmills from acacias---a different behaviour could be what is left as the "selection". But you did not mention that. You could not predict that. I could be many other things, too. Can you tell? What kind of selective mechanism is this, that you cannot predict what it's going to select and on what it's going to act?

      >The evolution occurs in a direction towards satisfying whichever fitness function I choose

      Oh, playing good. Have fun! Would you please describe, though, how and where this computation is carried out in the real (as in non-simulated) world? You have the hidden "overmind" that's characterizes ND, an "overmind" that ND share with creationism and ID. And at least those last two don't try to hide it below the carpet (or the algorithm).

      But you are dickering with a simulation that makes no attempt at simulating living systems. Because---being autopoietical---living systems define themselves as they make their conditions for existance. Now, and organism can become anything it can become (structural limitation from the conservation of the [org/env] structural coupling). In layman terms, it can do anything it can, as long as it does not die. ANYTHING.

      >IMHO, this looks like evidence that 'natural' selection has a measurable affect.

      And IMHO, this only means that you describe as "selection" that aspect of the *result* of evolution as you want to adscribe as selection.
      You are reversing cause-effect. In your imagination only, of course. A "Sehr interessanter Gedankexperiment", but one from which you'll learn nothing about biological evolution.

      >inaccurate replication

      Replication has nothing to do with living systems, which can't replicate, only reproduce (often, it's not requiered for life).

      Now, innacuare replication will give you a kind of evolution, non-biological evolution, which CAN be explained pretty well by Darwin et al.'s ideas, and one that is very different from the biological one. Again, it's the autopoiesis, see. That "auto" part, is the key. Automony is a consequence of autopoiesis, and autonomous system cannot be instructed, as they are operationally closed. Self replicating systems aren't, and can.

      >All this is all totally random.

      It cannot be, or there would be no life. Conditio sine qua non.

      [Man, those NDs do have you fooled!]

      >evolved 'evolvability'

      Deja vu. You---as many many people I had the please (well, not always such pleasure) to interact with, try *so* hard, and sometimes get so close. But the lack of the concept of autopoiesis clobs the

      --
      ``L'imagination au povoir.''
    5. Re:evolution != evolution by natural selection by Quelain · · Score: 1

      Ok then, which of these are organisms by your definition:

      a worker ant
      an ant colony
      the queen of the ant colony

      Are they autopoietic systems?

      How about commensalism or parasites? a virus?

      Giraffe necks? Well, it's possible that an SNP could measureably affect the affinity of a growth hormone receptor. Complex systems are more easily perturbed than simple ones, IMO.

      Yes, sure you won't be able to predict 100% exactly what will result from a given selection pressure. A random mutation might occur which grants psychic windmill avoidance powers to giraffes, who knows. It doesn't mean there is no predictive power to ND. Given the timeframe and known mutation rates, you can limit the possibilities, statistically at least. Maybe there's an infinitesimally small chance that a 'head air-bag' organ appears in one individual and is selected for in it's offspring. Even then, ND would predict that it would be something like a modification of the antlers for example, rather than a totally new feature.

      Dunno about playing god, I get no respect I tell ya =) It's funny how many times I've had bugs in the simulation which are 'exploited' by the little suckers. I'd say that's evidence against a need for an 'overmind' too. I didn't mean to do some things, but they had an effect anyway.

      My fitness function is there to define the environment, and my critters evolve to better suit their environment. In the real world, the fitness function is the environment. Stuff like the availabilty and type of food, predators, weather, geography, etc, etc.

      I'm not confused about how selection works in my simulation, it's mathematically precise =) I take the first generation (which has a completely random genome) and calculate a fitness for each individual. I then 'breed' the next generation from the 'most fit', and so on and so on.

      It seems obvious to me that an improvement in average fitness is a result of selection. Sure, if I culled at random, and it just so happened that the next generation was better, then yes, it would look a lot like selection had occurred. The difference is that I *know* that I'm not selecting randomly, and the selection happens *before* the improvement. Cause and effect. I also know that clumsy mountain goats fall off cliffs and slow antelope are lion food.

      The 'components' of my 'organisms' are created ex nihilo, but if I did somehow manage to simulate autopoietic systems for my work, I don't see how that would change anything.

      The prevalence of inaccurate reproduction (yeah, not replication) is something I see as evidence for ND. If life on earth evolved under the influence of NS, then we would expect most organisms to exhibit traits which allowed that evolution:

      - Greater numbers of offspring than is absolutely necessary
      - non-perfect DNA copying during reproduction, while normal cell-division (replication) is pretty much error-free.
      - Shorter lifespans than are 'necessary'

      It seems to me that evolution by any other mechanism would not require these features.

      I did read some Varela, thanks. Not a great deal, but I get some of it at least. I'm sure autopoiesis is a useful concept, and is a good description of 'life as we know it'. Can't see how it replaces natural selection though. I also don't see why NS can't apply to the evolution of autopoietic systems, nor can I see anything that prohibits non-autopoietic life, whether it evolves or not.

      I'll do a bit more reading though.

      --
      Cthulhu loves you.