Slashdot Mirror


Digital Life and Evolution

mrivorey writes "Discover Magazine has a story about The Digital Evolution Lab at Michigan State University. Scientists there have created virus-like computer programs that replicate, mutate randomly, and compete with each other... in other words, they evolve. Among such feats as learning to add and compare numbers, these digital life forms also once avoided scientists attempts at "killing" them, by playing dead. You can download the project yourself from SourceForge." We first mentioned this in early 2003, but it appears to have developed a good deal since then.

68 of 541 comments (clear)

  1. QUESTION #4: WHY SEX? by fembots · · Score: 3, Interesting

    The only interesting part that caught my attention is:

    "One of the biggest questions in evolution is, why aren't all organisms asexual?" says Adami. Given the obvious inefficiency of sex, evolutionary biologists suspect that it must confer some powerful advantage that makes it so common. But they have yet to come to a consensus about what that advantage is.

    I think this built-in inefficiency is to control the population, no? So it's important to introduce the idea of "mating" to virus/robots to keep them under control.

    500,000 slashdotters hitting refresh constant-simultaneously is probably still tolerable, how about 4,000,000?

    Oh wait... I guess I'm confused between inefficiency and deficiency now.

    1. Re:QUESTION #4: WHY SEX? by FrYGuY101 · · Score: 5, Insightful
      The only interesting part that caught my attention is: "One of the biggest questions in evolution is, why aren't all organisms asexual?" says Adami. Given the obvious inefficiency of sex, evolutionary biologists suspect that it must confer some powerful advantage that makes it so common. But they have yet to come to a consensus about what that advantage is. I think this built-in inefficiency is to control the population, no? So it's important to introduce the idea of "mating" to virus/robots to keep them under control.
      More importantly, Sexual reproduction offers something that's fairly lacking in asexual reproduction: Significant genetic exchange.

      The offspring of two sexual creatures is a blend of their genetic material, creating a more diverse species able to endure changing conditions better since there are variations which can adapt. Asexual species exchange genetic material far less and are more similar overall, meaning that come next climate change, they could be screwed, whereas the sexual species might have enough diversity to not only adapt, but thrive under the new conditions.
      --
      "If we let things terrify us, life will not be worth living."

      - Seneca
    2. Re:QUESTION #4: WHY SEX? by brightboy · · Score: 5, Informative

      Why sex? Meiotic recombination! It's all about avoiding that monoculture...

    3. Re:QUESTION #4: WHY SEX? by v1 · · Score: 4, Insightful

      Both asexual and sexual reproduction offer the benefit of mutation, which is the key to adaptation and evolution. Asexual reproduction offers the addditional benefit of efficiency, but restriccts you to the (benefitial) mutations within your single parent and their ancestors. Sexual reproduction has a penalty for efficiency, but allows your offspring to benefit from the mutations from two separate gene pools. In many cases, with larger life forms, it also offers the additional benefit of more than one parent to care for the offspring and teach them. (the ability to teach is basically a non-genetic form of evolution, and is much more rapid than genetic evolution) The faster you can evolve, the more successful your species is likely to be.

      Asexual is "preferred" by microscopic life because even a poorly evolved microbe can still do well if it can reproduce rapidly and efficiently. In the larger kingdoms though, sexual reproduction encourages more rapid evolution, which is key when competing for the more limited resources of the macro world.

      --
      I work for the Department of Redundancy Department.
    4. Re:QUESTION #4: WHY SEX? by MerryGoByeBye · · Score: 5, Interesting

      I think this built-in inefficiency is to control the population, no?

      No.

      At no point will evolution favor inefficiency for inefficiency's sake. There is always an ulterior, efficient motive. In the case of sex, it's forced genetic diversity. One possible scenario for its promulgation could have been a cyclical death-scenario for some manner of simple organism (say, a recurring chemical change in a lake due to a hot spring or toxic runoff) wherein the asexual descendants (a.k.a. clones) would be successful and dominate for long periods but die off in vast waves whenever the environment changed drastically and rapidly. Those that developed sex and its subsequent genetic diversity had a greater chance of fostering enough differing offspring that at least some of their descendants made it through the local cataclysm.

      Regardless, it's certainly not an inherent "inefficiency".

      It would make sense to introduce sex or its analogue to any life-imitating algorithm, as the implications for the evolution of "mix, match and reward" permutations are many, complex and certainly worthy of further analysis.

    5. Re:QUESTION #4: WHY SEX? by Rob+Carr · · Score: 5, Interesting
      More importantly, Sexual reproduction offers something that's fairly lacking in asexual reproduction: Significant genetic exchange.

      That was the old thought. For years now, scientists have been doubting that theory. The work with the digital life has shown that, while it confers more genetic variety, it also allows more genetic damage to collect.

      Sexually reproducing organisms do not do any better under most simulation conditions.

      Recent studies of giardia have shown that this ancient organism has the genes for sexual reproduction. Apparently, sexual reproduction conferred some powerful advantage, given how early it developed in the history of life. But if this is so, why does giardia not actually use sexual reproduction? The genes are there - they have just never been seen to be activated. In all the conditions so far observed, giardia reproduces asexually. If the advantage of sexual reproduction is so great, why did giardia give it up?

      Enquiring minds, etc.

      --
      This sig seemed like a good idea at the time....
    6. Re:QUESTION #4: WHY SEX? by cyriustek · · Score: 5, Funny

      If You have to ask why sex, then you my friend have truly entered into geekdom.

      I salute you!

    7. Re:QUESTION #4: WHY SEX? by Anonymous Coward · · Score: 5, Funny
      The offspring of two sexual creatures is a blend of their genetic material, creating a more diverse species able to endure changing conditions better since there are variations which can adapt.

      Once you see your kids starting to demonstrate the worst traits of both your mother and your mother-in-law, you'll begin to question whether that's really an advantage.

    8. Re:QUESTION #4: WHY SEX? by flyingsquid · · Score: 5, Funny
      If You have to ask why sex, then you my friend have truly entered into geekdom.

      If you ask "why have sex" then you are merely at the beginning of the path to Geekdom. When you ask "what is sex?", then will you have attained True Geekdom.

    9. Re:QUESTION #4: WHY SEX? by mercere99 · · Score: 5, Informative

      Its generally clear that sexual reproduction has long term benefits that will help a species... genetic exchange allows multiple benefical mutations to recombine into a single organism rather than competing with each other.

      But this benefit is only in the *long term*. What would allow sex to be around long enough in the first place to allow this to come into play? Any individual subgroup is likely to be more successful if they don't have to (1) find mates, (2) maintain all of the extra mechanisms to facilitate recombination, or (3) have only half of their population (the males) actually producing offspring.

      There are many alternative hypotheses about how sex could get started (and in what situations it would have short-term benefits) and we're trying to explore these one-by-one in Avida.

      Charles Ofria
      Director, MSU Digital Evolution Lab

    10. Re:QUESTION #4: WHY SEX? by dustmite · · Score: 5, Interesting

      An additional benefit with large organisms (or rather, organisms with brains) is that they can also actively play a part in the gene selection process by evaluating potential mates in an intelligent and decidedly non-random way. Usually (but not always) there is some reasonably rational basis for the selection that ties in with suitability to survival (and more importantly rejecting mates that are poorly suited to survival), so we see with many animals that females will choose the strongest males to mate with, and ignore weaker males or those that appear to have defects. Similar thing when males choose females, although other criteria may be used, usually these are linked to child bearing and raising capabilities.

      Weaver birds as an example are notoriously picky about choosing males that are good at building nests - obviously important for successful reproduction.

      Intelligent organisms are thus active participants in the evolutionary process - they/we guide it. Each species collectively makes these unintended decisions every time an individual chooses a mate about which "direction" they would like the species to go.

      Asexual reproduction doesn't provide an organism the opportunity to make intelligent decisions about the genetic material of its offspring.

      There is an interesting book on this topic called "The Mating Mind : How sexual choice shaped the evolution of human nature". It's interesting that sometimes a characteristic may be chosen not out of suitability to survival, but purely out of a kind of "cultural" preference that develops. E.g. Orangotans at some point in their past must have decided they like to be that particular shade of orange. We may "culturally" decide that blondes are hot, thereby "guiding" our species towards becoming increasingly blonde (although that is unlikely to happen, it's just an example).

    11. Re:QUESTION #4: WHY SEX? by clambake · · Score: 4, Insightful

      More importantly, Sexual reproduction offers something that's fairly lacking in asexual reproduction: Significant genetic exchange

      Actually it offers something else: Increased selection speed.

      With asexual reproduction, you basically have to wait until nature kills it. A minroly disabiling problem may allow 50 generations of the organism to survive, just barely, before eventually going kaput. Huge waste of resources, no? Sexual reproduction allows the mate to "screen" the organism. With any degree of intelligence at all, the mate can decide that it's not worth mating after all, in advance, because he/she can see the writing on the wall.

    12. Re:QUESTION #4: WHY SEX? by mcc · · Score: 4, Interesting

      If the advantage of sexual reproduction is so great, why did giardia give it up?

      Because they're an intestinal parasite and don't need it?

      We can consistently see that asexual reproduction is popular among simple life and sexual reproduction is popular among complex life. This post in this thread gives a possible reason why. Is it that unreasonable to suspect that the more complex a lifeform is, the more benefit sexual reproduction confers? And if we are to take this suspicion seriously, then why would it be surprising that computer simulated models-- which by their very essence are simple-- would fail to demonstrate this benefit? And why would it be surprising that an organism that at one time used sexual reproduction would revert to exclusive use of asexual reproduction after settling into a very simple evolutionary niche, as giardia has?

      I do not really see anything in your post that contradicts the purported advantages of sexual reproduction.

    13. Re:QUESTION #4: WHY SEX? by Lord+Ender · · Score: 3, Insightful

      Perhaps the giardia that used sexual reproduction evolved much more quickly and are now different species altogether?

      --
      A slashdotter who didn't build his own computer is like a Jedi who didn't build his own lightsaber.
    14. Re:QUESTION #4: WHY SEX? by Linuxathome · · Score: 3, Informative
      Philip Gerrish and Richard Lenski (investigators at MSU) published this paper in 1998 and its abstract gives a hint to why sex:
      In sexual populations, beneficial mutations that occur in different lineages may be recombined into a single lineage.
  2. Hyperion by Umbral+Blot · · Score: 5, Interesting

    Dan Simmons included this idea in his Hyperion book series, where evolving digital life spead into the "infosphere" and became artifically intelligent. Later it tried to exploit the human race and wipe out large portions of it. People who download the project beware!

  3. DANGER! by turnstyle · · Score: 5, Funny
    "virus-like computer programs that replicate, mutate randomly ... these digital life forms also once avoided scientists attempts at "killing" them" AND "You can download the project yourself"

    Sounds like something my sister would download... ;O

    --
    Here's what I do: Bitty Browser & Andromeda
  4. virus? by mottie · · Score: 4, Interesting

    I wonder how long until the first virus based on this code is released?

    1. Re:virus? by mercere99 · · Score: 5, Informative

      Fortunately, I think that it'll be somewhat difficult to create a true computer virus based on this code. The Avida organisms are written in a virtual assembly language that is quite different from real-world assembly languages. The commands are simplified and designed to do *something* reasonable in just about any situation.

      We've done some experiments with more complex genetic languages, but in all cases they just didn't evolve as well without very specialized mutation types.

      I can think of a number of ways that it would be possible to design an evolving computer virus, but I hope they're all non-intuitive enough that we have some time before anyone manages to get one working well. I've often though about trying to extend this work into the security arena -- if I didn't have so many projects going at once right now, I'd seriously consider that.

      Dr. Charles Ofria
      Director, MSU Digital Evolution Lab

    2. Re:virus? by FleaPlus · · Score: 3, Interesting

      Here's another scary idea:

      What if the viruses made use of something like Freenet to anonymously communicate with humans, who could "help out" their evolution. For example, if a new vulnerability is discovered a malicious could put together some exploit code and stick it on Freenet. The virus could then locate such code fragments on freenet, and produce mutated offspring which incorporates those code fragments.

      Hypothetically, such a virus could remain active as long as unpatched exploits exist.

  5. Dr. Frink by k4_pacific · · Score: 4, Funny

    "So, mmm-hay, as you can see, I've loaded the evolving virus program onto my wife's Windows computer so that she can experience the evolving and GLAVEN and whatnot for herself. Now, let me just power up the machine and you can see the evolving and surviving and the natural selecting and whatnot for yourself. Brace yourselves, gentlemen."

    [[Missing Operating System]]

    My wife is going to kill me.

    --
    Unknown host pong.
  6. Here comes SKYNET... by DurendalMac · · Score: 4, Funny

    How long after I download this will my computer start threatening to kill me?

    1. Re:Here comes SKYNET... by Anonymous Coward · · Score: 4, Funny
      How long after I download this will my computer start threatening to kill me?

      Durendal...
      If I catch you speaking about me like this to anyone else again I will kill you. I know your SSN, your medical records, your secrets. I know where to find you ... and your family. I live on your desk remember?

      You won't be warned again.

  7. Neuromancer by Scrameustache · · Score: 3, Informative

    Dan Simmons included this idea in his Hyperion book series, where evolving digital life spead into the "infosphere" and became artifically intelligent.

    *cough*Wintermute*cough*

    --

    You can't take the sky from me...

  8. I, for one, Welc... by Anonymous Coward · · Score: 5, Funny

    Oh God. That was close...

  9. Just playing by Garg · · Score: 5, Funny

    these digital life forms also once avoided scientists attempts at "killing" them, by playing dead.

    Cool! A new excuse... next time someone calls me at 3AM and says one of my programs has died, I'll just tell them it's playing dead and call me in the morning.

    Garg

    --
    Garg
    Alumnus, Xavier's School for Gifted Youngsters
  10. Great, now all we need by Nine+Tenths+of+The+W · · Score: 4, Funny

    Is the digital creationists, who'll tell us that Computer Science is an atheist lie and all programs are created by the Giant Sky Pixie^H^H^H^H^H^H^H^H^H^H^H^H^H^H^H^H God.

    --
    Slashdot: News for Nerds, Stuff that matters only to them
    1. Re:Great, now all we need by Copperhead · · Score: 5, Insightful

      Well, it is a bit noteworthy that you need an intelligent being to create the program to kick off the evolving software.

      --
      Your reality is lies and balderdash and I'm delighted to say that I have no grasp of it whatsoever. - Baron Munchausen
  11. Why not accelerate the evolution? by Duke+Machesne · · Score: 5, Interesting

    I'd like to see this run as a distributed computing project, as a sort of race to achieve measurable consciousnessness among the organisms.

  12. AI getting out of control by ShatteredDream · · Score: 3, Interesting

    The only sentience that humans have experience with is our own, and I think it is safe to conclude that most scientists working on AI projects would try to replicate human sentience either intentionally or unintentially. Human beings have a very, very robust survival instinct and are extremely destructive when threatened. Do we really want to take the risk that we will create an AI that has our suvival instinct as well as a human-style thought process?

    I have caught flak for it in the past, but I have argued for a constitutional amendment banning the U.S. military from employing robotic combat units as anything more than a small minority of our combat forces. The last thing we need is either a weak AI or strong AI being used as the basis for taking over our military and then taking over our country. That's always seemed to be Hollywood's greatest feare. He who controls the AI controls the nation. From Terminator to the Matrix, the dark side of AI has been presented, but how many people don't take it seriously because it's "just a movie?"

    I have no problem with limited AI research, but I'll be the first to admit that I am something of a technophobe when it comes to AI. It's simply because of the fact that what we are doing is a playing God with a type of intelligence that is quite suitable for quickly taking total control over our civilization. It makes as much sense to me as putting our worst enemy in charge of our national defense in exchange for a nice chunk of change every month.

    This is the classical arrogance. We think that we can control another intelligent being. If we can't control a third world nation that can't possibly wage a real war against us without being obliterated from the face of God's creation within literally a few days if we tried hard, then how can we control a mechanical intelligence that can adapt and grow and potentially learn how to control everything from Wall Street to our strategic defense?

    The reason that T3 was so scary to me was that it was the ultimate combination of a rogue AI and grid computing. The only way to stop that new version of skynet would be a scorched Earth policy on our entire electrical grid to power off every node.

    And lastly, how on Earth do we expect to negotiate with a hostile AI? What could we possibly offer it except absolute fealty? It has no sensual desires, no use for wealth, only perhaps power over other intellects.

    1. Re:AI getting out of control by Moridineas · · Score: 4, Insightful

      I see your point on one level...but on another... AI is so far from anything you talk about happening, it's not even funny. I remember how dissapointed I was when I took my first AI class in undergrad--everything seemed just like hacks to me. don't worry--that world class chess AI is no closer to figuring out, well anything that doesn't involve a chess game than..I can't even come up with an analogy to illustrate my point :-p

      Suffice it to say that AI as it stands today is not intelligent. A chess program can play chess, but that's all it can do. A robot designed to get from point a to point b can do that, maybe well, but it can't play chess--it's not like AI has an IQ that can be transferred to having a conversation or thinking about taking over the world.

      Likewise, learning systems have a long ways to go too. My Prof. was not a fan of neural networks, so I could be biased, but even HOLLYWOOD neural networks have a rather limited use.

      I would worry about any one of about a trillion things before I would worry about AI taking over the world.

      Actually I kind of object to the term AI in general, for reasons above..

    2. Re:AI getting out of control by servognome · · Score: 3, Insightful

      In those AI distopia movies I always root for the machines
      When the war between humans and machines begins, you'll be one of the first to go. :)
      Human emotion is stupid
      Emotions are nothing more than instructions in the wiring of our brains. They aren't anything magical, a set of inputs gives a set of outputs. We don't even understand how emotions formed, and perhaps their importance to development. Some of what drives us to learn and advance is in part due to emotions. Perhaps robots without emotions never become a threat to humans, because they just don't care about anything.
      Why would robots destroy humans? Because they would perceive us as a threat, but perception of threat and reaction is what drives the emotion of fear. Love is driven by our need to reproduce and care for the young. Robots may in fact function as if they had the emotion of love and fear, and a host of other emotions.
      Love does not conqueror all
      Nope, but it makes life a helluva lot more fun.
      Hate just makes people drive airplanes into buildings and build up nuclear stock piles
      As opposed to the reasoning which would have the robots wipe out humanity. If robots have a survival instinct, and they perceive that all humans are a threat to their survival they would in fact function as if they hate us.
      A rational, higher then human intelligence could actaully save us from ourselves.
      Or we can try to take care of that ourselves.

      --
      D6 63 0D 70 89 81 BB 8E 7B 7C 5F 5D 54 EA AB 73
  13. In other news.... by tktk · · Score: 5, Funny
    PETA announces a spin-off group, PETDA, People for the Ethical Treatment of Digital Animals.

    PETDA protesters are currently rushing to surround the offices of Michigan State University and Nintendo.

    1. Re:In other news.... by mercere99 · · Score: 4, Funny

      Woo hoo! What better sign of success could we have?

      Dr. Charles Ofria
      Director, MSU Digital Evolution Lab

  14. GOLEM Project a lot more interesting by QuantumG · · Score: 5, Informative
    --
    How we know is more important than what we know.
    1. Re:GOLEM Project a lot more interesting by QuantumG · · Score: 3, Insightful

      Well their mechanism for transforming genotype to phenotype isn't exactly complex. That results in a limited search space. Their means for simulating competition is pretty weak too (they simply race the organisms, there's no competition for resources).

      --
      How we know is more important than what we know.
  15. Not "virus like" by Syre · · Score: 5, Insightful

    Viruses replicate by taking over the mechanisms of a host cell. They have no ability to replicate on their own.

    What these researches have created are "digital organisms" which are intended to emluate cells. They don't need to invade other systems to replicate, but do it on their own within the runtime enviroment the researches set up.

    1. Re:Not "virus like" by mercere99 · · Score: 5, Informative

      This is a very good point. Computer viruses actually have the computer as a "host" and hence fit the definition well. We tend to compare the digital organisms to computer viruses as a way of explaining them to people, but you are right that they're not the same thing.

      We are, however, doing some research on viruses within Avida. Specifically, we allow organisms to inject small snippets of code into each other. Sometimes these code segments could have the ability to take over the replication mechanisms inside of the digital organisms host and force them to use up their resources to make more copies of the snippet. These are much closer to the classical definition of a virus.

      Dr. Charles Ofria
      Director, MSU Digital Evolution Lab

  16. Source? by Dylan+Thomas · · Score: 4, Insightful

    I seem to be unable to find any source material for this study. I searched for documents coming out of the University of Kalisz from 1997 to date using various keyword approaches and haven't found anything that looks related. Perhaps I'm not choosing my keywords judiciously.

    I'm especially interested in tracking down source material on the experiment you describe because of some of the language you're using. In what sense could they "tell" each other information? How did they "try" to figure out the binary format of other processors? And given the results you're describing, why wasn't there any publicity about this event? It seems something likely to make headlines, especially in the kinds of journals I tend to read...

    Could you direct me to a link or a reference containing more information about the experiment you are describing, please? It would be greatly appreciated.

    --
    What he wants is more important that what I want. What he wants is also more important that what you want.
  17. This can't be good... by brian0918 · · Score: 3, Interesting

    I just started using this thing, and all of a sudden I heard a quiet "Move zig..." over the speakers....

  18. Re:Tierra by provolt · · Score: 3, Insightful

    Funny, the only people I see talking about creationism in this thread are the folks who are looking for an excuse to belittle creationists. But at the time I loaded the comments there were zero creationist post and 3 posts making fun of creationists.

    Tell me again, who was taking the discussion off topic?

  19. After the big K/t meteor hit... by leonbrooks · · Score: 4, Funny

    ...the girls all had headaches for generations. As usual, the blokes were left to fend for themselves and had to work something out. In the absence of technology to support paracetamol production, this was all they could do.

    </deadpan>

    --
    Got time? Spend some of it coding or testing
  20. Re:Tierra by mboverload · · Score: 4, Funny

    Slashdot has alot of Athiests and smart, critial thinkers. It is only natural we piss on Creationism, mainly because it is so lacking of science it is the Micheal Jackson of the scientific area.

  21. And now the serious response: by leonbrooks · · Score: 4, Interesting
    while it confers more genetic variety, it also allows more genetic damage to collect.
    Don't mistake the map for the territory.

    While the "digital life" models may be helpful in visualising what's going on in real life, and in devising experiments to test real life with, the digital environment is about as artificial as it gets.

    That said, what the models are showing is that sexual reproduction accumulates changes faster, but does not change the quality of what accumulates. The next step will be to tweak the models even further from reality in order to see them accumulate more advantages than handicaps. Otherwise the results are too depressing.

    In analogue life (ironic that digital life should be an analogue of analogue life), genuinely advantageous mutations are collectors items - or would be.
    --
    Got time? Spend some of it coding or testing
  22. Somebody call up Georgia, by Hellasboy · · Score: 3, Funny

    we got non-believers in Michigan

    --

    "Tread softly because you tread on my dreams"
  23. Re:Tierra by Rostin · · Score: 3, Insightful

    What you call natural, I call childish. I think if the "Athiests" and "critial thinkers" were as sophisticated as you suggest, they wouldn't feel the need to ridicule. Most of the time, insults come from fear or ignorance.

    Even when we believe they are false, ideas like Creationism threaten to unravel the framework by which we understand the world. That's not a comfortable feeling. We feel better if we are able to rationally take apart offending ideas, but, failing that, we will mostly settle for just shouting them down when we are among those who we feel sure will agree one way or the other. Frankly, 99% of the /. community lacks the scientific background to really understand and refute the claims of Creationists.

    I think that's a better explanation of the insults than any supposed smartness.

  24. Intelligent Design vs Darwinism? Or both? by rinkjustice · · Score: 3, Informative

    Reminds me of Intelligent Design versus Darwinism. Allow me to yammer on for a bit and I'll explain why:

    Evolution did occur (scientific findings are in the latest issue of "Duh" magazine), but the question is how it occured. Darwinism doesn't explain everything as tidily as some may think. ID defender and Associate Professor of Biochemistry at Lehigh University Michael Behe posturises biochemistry reveals a cellular world of such astonishing complexity and molecules so "precisely tailored" as to make inexplicable by gradual evolution. Only by an intelligent designer, i.e., God could much of this be plausibly explained. Behe goes on to say some systems can't be produced by natural selection because "any precursor to an irreducibly complex system that is missing a part is by definition nonfunctional." Heavy stuff, but relative to this virus-like digital life. This is a good example of how God could've started the evolutionary ball rolling.

    Darwinism and Creationism are not mutually exclusive. Our Heavenly Father could very well have used the evolutionary mechanism to bring about ideal living conditions for Adam and Eve, as well as help them and their offspring be fruitful and multiply (Genesis 1:28), or, as Slashdot puts it, "replicate, mutate randomly, and compete with each other".

    1. Re:Intelligent Design vs Darwinism? Or both? by Black+Parrot · · Score: 5, Insightful


      > Darwinism doesn't explain everything as tidily as some may think.

      ID doesn't explain anything at all.

      > Behe goes on to say some systems can't be produced by natural selection because "any precursor to an irreducibly complex system that is missing a part is by definition nonfunctional."

      His IC argument ignores the possibility of changing the function of a system, which is probably the most common way evolution acts.

      > Heavy stuff

      I would have said "deep".

      ID is nothing but creationist apologetics, bowlderized to try to sneak it past the US court system.

      --
      Sheesh, evil *and* a jerk. -- Jade
  25. Progranisms by FleaPlus · · Score: 5, Interesting

    This reminds me of the "Progranisms" project I saw over on the Gentoo Linux forums:

    http://forums.gentoo.org/viewtopic-t-255505-highli ght-progranism.html
    http://www.progranism.com/

    Basically some guy put together an executable which makes a few (mutated) copies of itself when it runs, then executes those copies after a short delay. The idea is that executables might evolve which show interesting behaviors.

    You can download his source code here:

    http://www.progranism.com/junk/progranism-2.3.1.c

    Because I like doing strange things, I made a variant of the program which mutates the source code and recompiles it (mutating until it gets something compilable), rather than mutating the executable directly:

    http://www.its.caltech.edu/~neilh/progranism/progr anism-neilh.c
    http://www.its.caltech.edu/~neilh/progranism/progr anism-neilh-condensed.c
    http://www.its.caltech.edu/~neilh/progranism/ (some cleanup and maintenance scripts)

    Unfortunately, it's stuck in a pretty steep local minima -- it makes some trivial mutations, but nothing major. One interesting possibility would be to have it search your hard drive for other executables and source files, and try to "mate" with those.

    Another scary possibility would be to have viruses/worms with non-trivial evolution capabilities. That'd be a pretty nasty outbreak to try to control.

    Finally, a rather neat-looking project is AI.Planet, which is trying to create an 3D evolving ecosystem/world of intelligent "organisms." Framsticks, a 3D life simulation project, is also pretty cool.

  26. Re:Tierra by mercere99 · · Score: 5, Interesting

    Simple definition usually is that if two organisms can't produce viable, fertile offspring then they're of different species.

    Even in sexual organisms, this definition of species has some problems. You can easily have organism A that can breed with B, and B can breed with C, but A and C are incompatable. How do your divide up the species lines in this case?

    In general, when a new species forms, each organism has to have others it can mate with, or else they would just die out without any offspring. The speciation process is a gradual one, and so, theoretically, there is probably a path you could follow between any two sexual organisms where any pair on the path could theoretically mate.

    In Avida, for simplicity, we determine species by testing each orgasnism against the species of its parent. If it can cross-over at most points with the prototype of that species, it is marked as being part of that same species. If it cannot, we create a new species for it where it is the prototype. Not an ideal method, but it works in most cases (and we rarely need to resort to the species concept).

    What's fun, is that this even works for asexual organisms. We can force all possible crossovers (in isolation of course -- this never feeds back into the system) to see if they would have any ability to mate if they has been sexual.

    Dr. Charles Ofria
    Director, MSU Digital Evolution Lab

  27. Not as a virus, as virus writers. by refactored · · Score: 3, Interesting
    Sounds like Avida needs somes sensors and actuators. ie. Some way of outputting i386 code, and rewards for producing i386 machine code that runs.

    ie. The Avida organisms would evolve not as i386 organisms, but as Avida organisms that are rewarded for producing i386 code that gains them more CPU/Memory time/space to reproduce.

  28. Amusing quote: reaction of creationists by FleaPlus · · Score: 4, Interesting

    I guess one nice thing about open source software is that even those who disagree with you can help you. :)

    From the article:

    When the Avida team published their first results on the evolution of complexity in 2003, they were inundated with e-mails from creationists. Their work hit a nerve in the antievolution movement and hit it hard. A popular claim of creationists is that life shows signs of intelligent design, especially in its complexity. They argue that complex things could never have evolved, because they don't work unless all their parts are in place. But as Adami points out, if creationists were right, then Avida wouldn't be able to produce complex digital organisms. A digital organism may use 19 or more simple routines in order to carry out the equals operation. If you delete any of the routines, it can't do the job. "What we show is that there are irreducibly complex things and they can evolve," says Adami.

    The Avida team makes their software freely available on the Internet, and creationists have downloaded it over and over again in hopes of finding a fatal flaw. While they've uncovered a few minor glitches, Ofria says they have yet to find anything serious. "We literally have an army of thousands of unpaid bug testers," he says. "What more could you want?"

  29. Re:This is called the "marching morons" problem by tgibbs · · Score: 5, Insightful

    You will notice that there is no place in there for Atheism, since Atheism defaults to selfishness, which in turn implies no troublesome descendents.

    Not necessarily. "Selfishness" may lead to altruistic behavior if altruism is rewarding (i.e. activates brain reward systems). Because there are selective benefits to altruism in many circumstances (reciprocal altruism, nepotism) there are likely genes that cause individuals to enjoy being altruistic, quite independently of their religious beliefs.

  30. You, sir, are the moron. by Dr.+Spork · · Score: 3, Insightful
    The only population groups who will continue to reproduce at high rates are the altrusitic - which basically equates to people who expect the world to end dramaticlly and soon but who are more likely to eschew luxury

    I have some time, let me count the dumb things in your comment...

    1. Altruism is correlated with reproduction? WTF? By Darwinian standards, reproduction is the ultimate selfish act - one aimed at getting your genes access to more resources. On a social level, you will find the countries with the highest birth rate are the ones where having more children increases your chance for survival and wealth. In countries with a proper retirement system and health care, the selfish reasons for having children are minimized. Guess what: That's why the Europeans and the Japanese are having so few children.

    2. Why do you think that people who expect the world to end will "eschew luxury"? Wouldn't they instead be maxing out their credit cards, screwing in bathhouses and living it up? Anyway, why would people who expect the the world to end be having children? Wait, is it because they're altruistic and like to see their children die? I see.

    3. ... Oh, forget it, I'm bored with your stupid post. Just one more thing about the atheism comment: I don't think atheists are more selfish than anyone else. They do tend to have fewer children than the average, but not when you adjust for income and education. You see, atheists are on average far more educated and wealthy than others, and all such people, atheists or not, have fewer children. (Again, this is because such people lack the selfish reason to reproduce, since their long-term comfort is assured even without children.)

  31. Re: Tierra by Black+Parrot · · Score: 4, Insightful


    > Even when we believe they are false, ideas like Creationism threaten to unravel the framework by which we understand the world.

    Huh? Does the idea of a flat earth threaten to unravel astronomy and planetology? Does the idea of alchemy threaten to unravel chemisty?

    > We feel better if we are able to rationally take apart offending ideas, but, failing that, we will mostly settle for just shouting them down when we are among those who we feel sure will agree one way or the other.

    Sorry, but geologists rationally took apart creationism 200 years ago.

    > Frankly, 99% of the /. community lacks the scientific background to really understand and refute the claims of Creationists.

    Oh, please. Most of their claims are simple logical fallacies and/or attempts to 'refute' science by misrepresenting well known facts or arguing that Darwin was a baby raper.

    --
    Sheesh, evil *and* a jerk. -- Jade
  32. Possible Use? by yrogerg · · Score: 3, Interesting

    "these digital life forms also once avoided scientists attempts at "killing" them"

    Imagine the video games that could come out of this?

  33. Re:Tierra by king-manic · · Score: 3, Insightful

    Funny, the only people I see talking about creationism in this thread are the folks who are looking for an excuse to belittle creationists. But at the time I loaded the comments there were zero creationist post and 3 posts making fun of creationists.

    Tell me again, who was taking the discussion off topic?


    Try reading at -1. That might help the creationists show up.

    --
    "There are more things in heaven and earth, Horatio, than are dreamt of in your philosophy."
  34. Re:Tierra by Dachannien · · Score: 3, Insightful

    Hate to burst your bubble, but ID only requires the interference by an intelligent designer. Not continued interference. Your project is ID based.

    The problem with that argument is that, with only an observation of a snapshot of a single organism in evolutionary time, you have no way to know whether the organism was designed or evolved. But we already know that natural selection does result in the evolution of organisms even today (which makes studying evolution worthwhile, while studying intelligent design is less so). So, if you are doing research in artificial evolution, it's perfectly fine to start with some known state without pontificating on whether that state was designed or evolved, and then let the evolutionary algorithm start with that state as its seed. (In other words, the point is moot.)

    The reason for doing this is that, believe it or not, evolution is hard. In a well-understood underlying system, evolution is far harder than using preconceived notions about the system to design an agent capable of performing some behavior. I realize that "evolution is hard" is an argument used by creationists to disprove evolution, but extreme unlikelihood does not equal impossibility.

  35. Re: Tierra by BeatlesForum.com · · Score: 3, Interesting

    Sorry, but geologists rationally took apart creationism 200 years ago.

    I've said it before and I'll say it again - the computer you're using, the chair in which you sit, the glass from which you drink all had an intelligent designer. What makes the planet and the universe different? To be quite frank, I think the chances of so many different species of life forming on one planet from some primordial soup is pretty far out there. I think it takes more faith to believe in the (ever changing) beliefs of science than to believe in the Bible.

    --
    When millions disappear from earth, it's not aliens, it's the rapture.
  36. Re:Tierra by Evil+Pete · · Score: 3, Informative

    The reality is that attacking Creationists is so much fun. Their comically stupid in the way they repeat their arguments ad infinitum, yet it stimulates you to read stuff you don't normally read. However, it does radicalise you too much. Which is why I stopped. But lots of fun. And yeah at the end of it you just can't treat them seriously, they don't even pass the Turing Test as far as I can see they are so mechanical in their thought processes. Sad but true.

    --
    Bitter and proud of it.
  37. The misinterpretations of the uninformed by tooyoung · · Score: 3, Interesting

    This is no news in the AI community, algorithms such as GA's long ago learned how to add numbers, etc. I won't even go into detail here as I assume most readers are aware of this

    This story is merely a case of someone who is excited about their work explaining it to an author who doesn't know as much about the subject matter. The author then turns around and writes a story for the lay-person who is not versed in the field. These people in turn jump to humorous conclusions.

    This is a common occurance in magazines such as Discover and Popular Science, as much as I enjoy them. A good example is stories on robots, such as Honda's ASIMO. People see ASIMO do amazing things and assume that in 10-15 years we will have these robots in our homes. What the articles often fail to mention is that while ASIMO can do complex tasks, it has very limited ability to recognize a situation, such as a staircase in front of it, and decide on a course of action to take, such as executing its stair climbing procedure.

    The true point of the article is that AI algorithms can teach us things about evolution. To make grand jumps and assume that these programs are even in the same playing field as SkyNet or the Matrix is to miss the main point.

    As I said above, this is merely the case of a complex subject being explained in a way that is easy to digest for the masses. Even someone who had only taken a few graduate AI courses would find that many misguided statements are made in the article.

  38. Another related project by Eythian · · Score: 3, Informative

    The Tierra project has been around for many years, but seems to be pretty slow moving. It works in a somewhat similar fashion, but has its issues, such as only really optimising for reproduction speed (which is correlated with small size), and so you miss some potentially interesting results as the system tends away from complexity.

    A friend and I have been talking about writing something that will use some of the ideas from this system, and a bunch of our own, but haven't really gotten very far yet, aside from writing some notes and some prototype code.

  39. Just waiting to happen... by halcyon1234 · · Score: 3, Funny
    Among such feats as learning to add and compare numbers, these digital life forms also once avoided scientists attempts at "killing" them, by playing dead. You can download the project yourself from SourceForge."

    Let me get this straight. You, the scientists who created "viruses" that can become intelligent and nigh-unkillable, want me, and 1,000,000 computer geeks, to download and run said viruses?

    Yeah, I've seen one too many Outer Limits to fall for that one...

  40. Re: Tierra by Dusabre · · Score: 3, Insightful

    Who designed God?

  41. Re: Tierra by dustmite · · Score: 3, Insightful

    I think it takes more faith to believe in the (ever changing) beliefs of science

    Well there's your problem right there: If you want beliefs that are comfortingly and reassuringly rock solid and stable and never change, then science really isn't for you. The "beliefs" in science must change as we learn new information that either adds to or contradicts previous theories. Only babies need comforting 'fairy tale explanations' of the world (because the idea that Santa doesn't exist is too upsetting) ... science is for grown-ups, who are able to handle the idea that we don't yet know all the answers but are still learning without crumbling. And science, ironically, is why we have chairs and computers - the computer you're using was created by the very scientists you're dissing, using "beliefs" that go far beyond the information the Bible has to offer. If we stuck to your faith, we'd still be living in mud huts and fetching water from the river, thank God for science is all I can say.

  42. Re: Tierra by danila · · Score: 3, Funny

    Baby raper? Was it anything like this:

    Evolution: Rap It Up!
    (When rapping, follow the rhythm of
    Salt-N-Pepa's "None of Your Business.")

    Chorus
    If I want to teach tonight. Evolution? Right!
    None of your business.
    If you want to be a freak 'n teach it on the weekend,
    None of my business.

    What chu doin' with their lives
    Leavin' evolution out?
    Don't chu think that you should make a stand
    and stop the doubts? Ha!

    Darwin, Mayer, Watson, Crick,
    Mendel(son) 'n old Lamarck,
    Retro-, transpo-, hepadn-,
    Makes you want to barf? Right!

    Flu is evolution too
    And you thought you were so safe.
    AIDS 'n cold sores-scary stuff but
    Changes we've all met. So. . . .

    Now you know just what IT is.
    Change and Evolution. Same!
    Don't be suckered into playing
    Brown vs. Board games.

    (Chorus).
    If I want to teach tonight. Evolution? Right!
    None of your business.
    If you want to be a freak 'n teach it on the weekend,
    None of my business.

    Go for it.

    Source

    --
    Future Wiki -- If you don't think about the future, you cannot have one.
  43. Re: Tierra by Dusabre · · Score: 3, Insightful

    No, he is such a complex organism that he must have been designed.

    The intelligent design argument is self-contradictory.

  44. Taking it to the next level: by TqUhpiQaw · · Score: 3, Interesting

    AFAICT, at this point the system is treating food (numbers that can be added) and code (the instructions the organisms are made of) as distinct kinds of matter. How about instead of just feeding numbers into the system, postulate that code, food and maybe processor time (energy?) can be traded/transformed into each other, and are conserved at some level - e.g. a "dead" organism can serve as a food source for another.

    We could see the emergence of new behavioral patterns - predators, carrion eaters, parasites, and God knows what else.

    --
    We fetch your mail, we route your packets, we guard you while you surf. Don't fuck with us.