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Soil Bacteria Show High Resistance to Antibiotics

Miraba writes "Microbiologists have found that soil-dwelling bacteria are highly resistant to antibiotics, even ones that they've never been exposed to before. While this information suggests that superbugs could arise from these bacteria, it also provides the opportunity for testing new techniques in drug development for the future."

33 of 149 comments (clear)

  1. Another diet change by AndroidCat · · Score: 5, Funny
    Beef is off the list thanks to Mad Cow. No chicken because of the bird flu. No pork because it'll be green and glowing soon. What fish? No genetically modified veggies or grain...

    And now I have to give up eating dirt!

    I guess I'll become a Breatharian...

    --
    One line blog. I hear that they're called Twitters now.
    1. Re:Another diet change by Sen.NullProcPntr · · Score: 4, Insightful
      It's not likely that the bacteria in question can infect you. Your insides are a very different environment than Canadian mud. (Otherwise anyone who got a cut while out gardening would die from infection.)

      According to TFA; the real danger is if the dirt bacteria cross with bacteria that can infect humans. They seem to imply that this is likely to happen and may have already happened (resistant staph infections).

      Why this would suddenly come to light may have more to do with research funding coming up than any real danger. After all humans have been around dirt for a long time.

      But I'm the suspicious type.

      So, go ahead and have another serving of dirt;-)

    2. Re:Another diet change by Anonymous Coward · · Score: 2, Funny

      Like slashdotters, bacteria reproduce asexually. No chance of "crossing."

    3. Re:Another diet change by Heembo · · Score: 2, Informative

      No pork because it'll be green and glowing soon.

      It's way worse than that - They are going to maike Pork TASTIER through generic engineering! You want to talk scarry? Check out this article: http://www.cnn.com/2006/TECH/science/01/20/pig.gen ome.ap/ "Researchers to map pig DNA"

      --
      Horns are really just a broken halo.
    4. Re:Another diet change by nanobuggs · · Score: 2, Informative

      there are many ways of 'crossing', ie exchanging of genetic material - through viruses (transduction0, by free DNA(transformation), cell-to-cell contact + plasmid(conjugation).

  2. Solution by quokkapox · · Score: 3, Funny
    Just thoroughly wipe down your dog|cat|kid with bleach when they come inside after playing in the backyard.

    Works for me...

    --
    it's a blue bright blue Saturday hey hey
  3. Re: Suggests the opposite perhaps? by Black+Parrot · · Score: 3, Insightful

    > Taking a wild ass guess I would be unsurprised if it turned out that the reason soil based bugs show such resistance is because some other bug is already using this antibiotic and they had to develop resistance to survive. For example, look at Penicilin which is naturually produced by mold presumably for this very reason: to kill bacteria.

    We've been putting antibiotics in animal feed for a long time now. Probably the environment is "polluted" with it just like with pesticides, mercury, etc.

    --
    Sheesh, evil *and* a jerk. -- Jade
  4. As someone in Microbiology... by CupBeEmpty · · Score: 5, Interesting

    I am not really surprised that soil bacteria are incredibly hardy. Remember that Bacillus anthracis (or Anthrax) is a bacterium that is endemic to soil. It is an incredibly hardy bacterium that can last as a spore in the right conditions for years (literally decades). Bacteria that live in the soil live in a hostile environment, to which they will develop methods of immunity. If a bacteria can live in soil, which is a hostile environment then one might guess that the same bacteria could handle the relatively "easy-to-live-in" human body. It is also interesting to note that many of our antibiotics are derivied from organisms that fight off bacterial infection. These same organims are prevalent in the soil. I am not sure what the big surprise is here?

    1. Re:As someone in Microbiology... by Onuma · · Score: 4, Interesting

      Nature will find a way...

      I'm not surprised in the least. Having studied Forensic science - not quite as detailed as microbiology - I know a little about this subject. Organisms living in soil are exposed to numerous chemicals and other species, it's a wonder that they're not immune to even more antibiotics and disinfectant chemicals.

      Another point: are these same resistant organisms hostile towards humans? They could simply exist without needing us in the least. They could also be beneficial, like the organisms which live inside and outside of our bodies; symbiotes.

      I think what is worse than bacteria becoming resistant to the drugs we use is our haste to use such drugs. People are far too dependent on prescription and over-the-counter medications these days, even if it is known that said medications will not cure or even treat the symptoms. Zithromax is not a proper prescription for the common cold (I have been prescribed this by Army doctors, for exactly this reason). I'm a fan of the placebo - let them think it will work, and chances are it will.

      --
      What else can happen when an unstoppable force collides with an immovable object?
  5. Crocodile blood antibiotics by ShnowDoggie · · Score: 4, Interesting

    Alligator/Crocodile blood anyone? They live in swampy places, fight even each other, and do not seem to get infections. (Well, not as easily as humans anyway ...) Here is just one link: http://news.bbc.co.uk/2/hi/health/4155522.stm

    1. Re:Crocodile blood antibiotics by jcr · · Score: 2, Interesting

      I've also heard that vultures and other scavenging birds have incredibly effective immune systems. They must be exposed to all kinds of nasty bugs, eating decaying carcasses as they do.

      -jcr

      --
      The only title of honor that a tyrant can grant is "Enemy of the State."
  6. Soil != Living Human by pkhuong · · Score: 4, Interesting

    Topic says it all. Different pH, temperature, humidity, ... Bacteria, fungi (etc) that thrive in the ground usually don't like it as much in a hot, warm and nearly neutral human body. We don't have a lot of things that work very well on fungi (heck, most of our antibiotics come from fungi), but they don't represent a large danger, simply because our insides are usually a bit too warm for them. Let's not panic too early.

    --
    Try Corewar @ www.koth.org - rec.games.corewar
    1. Re:Soil != Living Human by Anonymous Coward · · Score: 2, Informative

      Conjugation. Bacteria can exchange the plasmids that impart resistance. They hook up with little tubes between them. The danger here is not in soil bacteria, but in the chance that these plasmids will transfer to infectious bacteria. The significance here is that they discovered that the genetic code to resist 15 antibiotics is all around us in the soil, and it just takes a chance meeting for plasmids to be exchanged and for resistance to be imparted in this way. It is just a matter of time, and it has happened before.

    2. Re:Soil != Living Human by (negative+video) · · Score: 2, Interesting
      We don't have a lot of things that work very well on fungi (heck, most of our antibiotics come from fungi), but they don't represent a large danger, simply because our insides are usually a bit too warm for them.
      Nah, fungi just love warm wet guts. What they don't like is our immune systems. Fungi have many more types of protein than bacteria, and lack the capsule that bacteria hide inside, making them highly susceptible to the human adaptive immune system. With a strong immune system, you can eat live yeast as food. On the other hand, with Soviet Immune Suppresion, yeast eat you!
  7. This just in! by Millenniumman · · Score: 5, Funny

    Studies have shown that eating dirt is, in fact, unhealthy.

    --
    Stupidity is like nuclear power, it can be used for good or evil. And you don't want to get any on you.
  8. Major Oversight: Who will develop the antiobiotic? by reporter · · Score: 3, Interesting
    The article starting this thread seems to imply that these superbugs in the soil might be used as test subjects to check the efficacy of new antibiotics. However, there is a more serious issue: American companies are abandoning the development of new antibiotics.

    There is a touch irony here. The major justification for non-socialized medicine like that in the United States is that private enterprise will provide the economic rewards which will spur innovation in developing new drugs. However, what happens when the capitalistic system does not provide the necessary rewards?

    Such is the case with new antibiotics. Typically, patients take antibiotics for a week and never consume the stuff again until the next infection arises. By contrast, drugs treating chronic conditions like excessive cholesterol are consumed daily and hence provide signficant financial rewards. As a result, American companies have abandoned the development of new antibiotics in favor of drugs treating chronic conditions.

    What is the point of using superbugs in the soil to test the efficacy of new antibiotics when Americans companies are not developing new antibiotics?

    Then again, in the end, we are all dead.

  9. Antibiotics by eebra82 · · Score: 2, Informative

    An antibiotic is a drug that kills or slows the growth of bacteria. Antibiotics are one class of antimicrobials, a larger group which also includes anti-viral, anti-fungal, and anti-parasitic drugs. They are relatively harmless to the host, and therefore can be used to treat infections. The term, coined by Selman Waksman, originally described only those formulations derived from living organisms, in contradistinction to "chemotherapeutic agents", which were purely synthetic. Nowadays the term "antibiotic" is also applied to synthetic antimicrobials, such as the sulfonamides. Antibiotics are small molecules with a molecular weight less than 2000. They are not enzymes.

    http://en.wikipedia.org/wiki/Antibiotics

  10. Dirt's a tough place to live by HangingChad · · Score: 3, Insightful
    Soil is pretty difficult environment for survival. You could make the case those microbes have earned the right to live there by being tough sonsabitches. When we wanted antibiotic resistant bacteria, we used to go take samples at the hospital. Some of those cultures were scary. The bugs that survive at the hospital are the toughest mofo's on the culture block.

    Just like weeds picking up resistance to herbicides. With the rampant application of weed killer, we're actually breeding tougher weeds.

    There's a reason they survive. It's because they're tough and adaptable. Sets up an interesting situation. We depend on modern herbicides and pesticides to maintain the food production it takes to feed a planet that's already over-crowded. But the weeds and insects we're trying to kill aren't sissies. At some point the chemicals we have to use to kill them are start going to take a toll on us.

    Or maybe they already are.

    --
    That's our life, the big wheel of shit. - The Fat Man, Blue Tango Salvage
  11. You're probably right, but I wonder... by TrekCycling · · Score: 2, Interesting

    I instantly thought of this when I read the headline. I'm sure you've seen the studies. The ones that say that the average tap water has X-particles per million of Prozac, X-particle per million of Xanax, etc. The point being that human beings consume large amounts of medicine and then much of them gets excreted out somehow and eventually (and unfortunately) find their way into the ecosystem. Our water and probably our land. So a study like this makes me wonder (and feel free to club me over the head if this is impossible, because I'm just a programmer, not a a biologist) if it's possible that as we use more and more antibiotics on ourselves, on cows and chickens in large amounts, if at some point these don't make their way into the system and possibly help promote a more aggressive evolution of these superbugs. I would like to see a study done on that if there isn't already a definitive answer to *that* question.

    1. Re:You're probably right, but I wonder... by DogDude · · Score: 2

      There are tons of studies out there, already. It's been happening for quite a while now. People, every day, die from common bacterial infections that have evolved to a point where doctors simply don't have what they need to kill them. It's an escalating arms war that we (humans) will eventually lose. I personally know two people that died, in hospitals, from simple bacterial infections. I believe that the CDC has been warning about overuse of antibiotics for a while now, but unfortunately, you can find antibiotics in just about every consumer product, because people are so fucking clueless, and child-protective at the same time. This is such a real problem, that I make a point NOT to buy anti-bacterial cleaners for my house, which is starting to be a tough thing to do. Doctors of all kinds, when cleaning their work areas, generally alternate between several types of antibiotic measures because antibiotic resistance is such a real problem, now.

      --
      I don't respond to AC's.
  12. ... & dirt don't hurt by Joebert · · Score: 2, Funny

    So much for "God made dirt & dirt don't hurt."

    --
    Wanna fight ? Bend over, stick your head up your ass, and fight for air.
  13. I'm glad I didn't take that graduate position! by turtledawn · · Score: 2, Interesting

    I was recently considering entering graduate school, and one of the fellowships I was looking at was for a study examining very nearly this topic- the effect of antibacterial-contaminated runnoff from farms on soil and watershed bacteria, with a possible extension into effects on the digestive flora of aquatic life. I didn't take it, but it seemed like a very interesting and important subject. If it's made it into the mainstream press already, though, I would have been facing a pretty limited opportunity for publishing. I'm glad the information's out there! Maybe this wll help make clear the importance of more limited prophylactic antibiotic use.

    --
    Uh, "if it looks roughly mouse-shaped according to my infra-red sensitive pit, eat it"? --Chris Burke 09-08-10
  14. How to explain that? by Jodka · · Score: 4, Interesting

    Could the natural resistance of soil bacteria to antibiotics result from the natural presence of antibiotics in soil?

    Penicillin, the quintessential antibiotic, is derived from mold. Suppose that the molds and bacteria are battling it out in the soil, and the molds attack the bacteria with antibiotics, so then the bacteria evolve resistance to those antibiotics.

    --
    Ceci n'est pas une signature.
  15. WOW... how wrong. by CupBeEmpty · · Score: 2, Interesting

    Well I am glad that the Boston Globe, pinnacle of science that it is has deemed antibiotics to be a dead field. I would say that this cannot be more wrong. Not only are antibacterials being actively sought I have first hand knowledge of this fact. Private industry and the government have poured millions into finding vaccinations, antimicrobials, and many other biological elements of disease resistance. Your statement is wrong at best and intentionally misleading at worst. The most hilarious part is that the US is by FAR the leading country in this tpye of research. This is why everyone and their mother in the fields of immunology, microbiology, and biotechnology, wants a PhD from a US institution. This is why my boss gets at least 20 emails a week from people outside the US wanting to join our lab, despite the fact that it is very small.

  16. Re:Suggests the opposite perhaps? by Malor · · Score: 4, Informative

    Did you actually read the article? They talk at length about how the soil is, well, a giant germ-warfare zone. Bacteria are all attacking each other all the time. Two of the strains they pulled out of the soil were resistant to 15 of the 21 antibiotics with which they tested. They explicitly mention that many of the antibiotics are already synthesized by competing bacteria. They believed, though, that it was very unlikely that any bacterium would ever have been exposed to all the drugs they were resistant to. The researchers believe the germs are using existing defense mechanisms to apply to new (to them) antibiotics.

    Your assertion that 'because no superbug yet exists, none ever will' is just, well, stupid. That's like saying that nothing ever changes... yet, somehow, we have people now, and we didn't forty or fifty million years ago.

    The modern world is unique, from an evolutionary standpoint, so none of the existing bacteria will have evolved to deal properly with it. They're working on that. A superbug is only a matter of time.

    MRSA is a pretty damn good first iteration.

  17. Required Simpsons quote, adaptively mutated by Tsar · · Score: 3, Funny

    Ladies and gentlemen, er, we've just read the article, and, uh, what we've seen speaks for itself. The soil beneath us has been taken over -- "conquered", if you will -- by a master race of antibotic-resistant bacteria. It's difficult to tell from this discussion point whether they will consume the captive ants or merely enslave them.

    One thing is for certain, there is no stopping them; the superbugs will soon be here. And I, for one, welcome our new microscopic overlords. I'd like to remind them that as a Slashdot poster with excellent karma, I can be helpful in rounding up others to toil in their underground plague nurseries.

  18. Er, Um soil is where we GET the antibiotics! by Ancient_Hacker · · Score: 3, Insightful
    There's a very good reason the bacteria in the soil are resistant to antibiotics, and you don't need a fancy new study to figure this out.

    If you research where antibiotics come from, where drug companies have for 50 years or more looked for new antibiotics, it's in the dang soil!

    yes, scientists figured out long ago to not just set out pertri dishes and hope for new varieties of spores to come to them-- they've gone out into the world collecting soil and the concomitant spores. IIRC the majority of antibiotics in use were found in the soil of various places, all over the world.

    Nothing new here.

  19. Re:But soil bacteria... by brianf711 · · Score: 2, Informative

    This is a critical comment and should be modded up. I was about to make the same comment (so hence I may be biased for my praise of your comment).
    http://www.britannica.com/nobel/micro/629_1.html
    Waksman was studying soil bacteria when he discovered streptomycin. Numerous other antibiotics were identified from similiar bacteria, so it is not surprising, as you mention, that many forms of bacteria are resistent to antibiotics, since either the soil was the original source for the antibiotic, or the mechanism of action for the antibiotic for which future chemical compounds were screened. For these reasons, I don't see what all the concerns are. Sounds like just uninformed fear-mongering.

  20. At some point... by sgage · · Score: 2, Insightful

    ... you just have to trust your immune system. The whole "hygienic" germ-free hysteria that our culture promotes (and which has been promoted for many years by many corporations that sell relevant products) is a self-fullfilling prophecy. If you don't eat some dirt as a kid, you won't ever develop the appropriate defenses.

    If you don't grovel around in the real world and exercise the ol' immune system, you'll have all kinds of allergies and asthma and whatnot. When I was a kid... oh, never mind. No, DO mind. When I was a kid, hardly anyone had allergies, or asthma, or ear-aches, or any of that crap.

    Blanket overuse of antibiotics is exactly the same as pesticides and herbicides ending up with pesticide and herbicide resistant pests and weeds. You can't just make "negative" manifestations of nature go away like that. Most of the /. readership is probably engineer-types, and that is engineer thinking. Biology is way, way more complicated. ;-) I feel like I'm one of the few biologists/ecologists here...

    Anyway, e.g., the polio outbreak of the 40's and 50's was actually due largely to too much cleanliness. Very young children would typically develop resistance to the (totally ubiquitous, endemic) polio virus in earlier times (via eating dirt), but "modern" notions of hygiene precluded this.

    So, eat dirt or die! :-)

    - sgage

  21. Re:don't flush antibiotics by Rob+Simpson · · Score: 2, Interesting
    That is rather difficult for some antibiotics... penicillins, for example, are eliminated primarily by being excreted unchanged by the kidney. Early on, urine was collected from patients so that the penicillin could be reused.

    As far as actual tablets, etc., go...antibiotics are usually prescribed to be taken until there are no more tablets. If you do have any meds you want to get rid of, please take them to a pharmacy - they should put it in their drug disposal bucket for no charge.

  22. Well, no kidding... by Angst+Badger · · Score: 3, Insightful

    I hate to belabor the obvious, but it's no wonder soil bacteria are resistant to antibiotics: they live in close proximity with the same fungi that evolved antibiotic chemicals to combat them. While we humans are doing a pretty poor job of judiciously using antibiotics and we are probably creating some real long-term problems by polluting the environment with antibiotics and disinfectants, we shouldn't forget that we didn't invent antibiotics, we discovered them. There are going to be lots of bacteria that are resistant to antibiotics simply because they evolved in an environment rich in fungi that produce them.

    If you want to worry about antibiotic resistant bacteria capable of causing disease in humans, hospitals are a much bigger breeding ground than soil, which harbors innumerable species of bacteria that are harmless to us or even beneficial agriculturally, and only a few that can do us harm.

    --
    Proud member of the Weirdo-American community.
  23. I have some personal experience with this by gone.fishing · · Score: 2, Insightful

    A few years ago I was working in my garden and my leg started itching, there was a small red dot mid-calf and minor swelling around it. I figured it was a bug bite. Within an hour the entire calf had turned red and was warm to the touch. I made a trip to Urgent Care and the doctor perscribed an anti-biotic and told me to go home and soak the leg in the hottest water I could stand. The next day I went into see my own doctor, by now my calf looked like an over-cooked hot dog and I was afraid the skin was litterally going to split open.

    They drew blood and attempted to locate some pus to drain but found that it was not in sacks but more or less distributed though the leg (so the attempt to lance did not result in much drainage). I was given another kind of anti-biotic and was told to continue with the frequent hot water soaks. This time the anti-biotic seemed to help because the swelling started to reduce but soon enough, the swelling started up again and I found myself back in the clinic. This time my leg had started to lose it's pulse and my foot was grayish. They ran an anti-biotic in through an IV and had me elevate my leg for a few hours in the clinic. I was given another perscription and sent home with instructions to keep my leg elevated and to give it more hot soaks. I was told to come in to be checked the following day and to cancel any plans that I had for the weekend. These last anti-biotics worked and the swelling in my leg stayed down. The following day, I dutifully returned to the doctor and was told that had the swelling not shown such dramatic improvment, I would have lost my leg.

    Through all of this, I never ended up in the hospital. I was treated with a barage of very powerful anti-biotics (the same exact ones that they use for "flesh eating bacteria") and my doctor told me that the bug I had was very closely related to that bug, he said that it was soil-borne and probably entered the skin though a bug bite.

    I was even able to keep my weekend plans but I did not walk much and had to keep the leg up a lot (I went camping but not too far away). It took well over a year for my leg to return to it's normal color and I lost some tissue below the skin, these "things" are still with me (the best that I can describe it is it is like a scar underneath the skin, you can see some roughness in the skin and there is a different texture to the area but all the muscles and everything seem just fine.

    I think my experience brings out the best and the worst of the HMO style medical system. I'm pretty confident that had I had a regular kind of insurance, I would have been in the hospital. On the other hand, the clinic was well staffed and had access to the right lab equipment and drugs to treat me. I'm glad it came out like it did and I really have to credit my doctors for everything that they did. They saved my leg.

  24. theories always suck. by Stumbles · · Score: 2, Interesting

    So basically once you get beyond all the mombo jumbo, what these guys are are looking to do is; find a way to develop anti-bacterial agents capable of killing microbes and their their cousins. Noble in effort but overlooks one fundamental problem. What happens when these agents start attacking the very same or similar microbs and bacteria that are essential to the growth of plants? Theres no way they can guarantee those agents will not. A disaster waiting to happen.

    --
    My karma is not a Chameleon.