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Pittsburgh Professors Challenge Darwin

Syberghost writes "Darwin's Theory of Evolution comes under an interesting attack from an American anthropologist and an Italian biochemist, according to an article from University of Pittsburgh's school newspaper. In a nutshell, Schwartz and Maresca argue that change is not gradual as Darwin stated, but comes rapidly in response to drastic mutations caused by shifting environmental conditions."

193 comments

  1. Pardon my ignorance but by BitterAndDrunk · · Score: 5, Insightful

    Isn't that simply punctuated equilibrium? I'd thought it was already considered part of current evolutionary theory. I'm a neophyte so I'm probably way off; someone correct me. (and no FSM references please; they're already hack and it's under a year old)

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    1. Re:Pardon my ignorance but by vitamine73 · · Score: 2, Informative

      I have read their original research, put this clearly seems to be a new form of Gould's and Eldredge's theory.

    2. Re:Pardon my ignorance but by poopdeville · · Score: 3, Informative
      Yes, punctuated equilibrium. For the uninitiated, imagine a differentiable manifold called 'utility'. Evolution drives to maximize utility, but it's easy to get stuck in local maxima. That's when an ecosystem is in equilibrium. It takes drastic environmental change to knock everyone out of that local maximum and maybe look for a new one.

      On another note, Darwin supports his theory of evolution. He looks like a monkey!

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    3. Re:Pardon my ignorance but by lgw · · Score: 4, Insightful

      I agree with your analysis. How is this new at all? We've know for decades that simple mutation-and-selection doesn't drive change anywhere near fast enough to account for history. The current theory as I know it as a layman is that occasional periods of rapid change are needed, and no biologist has believed in "Darwinian" evolution for generations.

      I suspect these fellows have some interesting new postulate, and the Pitt News just got it wrong.

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    4. Re:Pardon my ignorance but by vitamine73 · · Score: 1

      *not* read

    5. Re:Pardon my ignorance but by phoenix42 · · Score: 1

      Without reading his research, the article seems to be describing puncuated equilibrium. The article does make a good point though; that as scientists, biologists and anthropologists should explore alternative models of evolution. I stand pretty firmly in the school of puncuated equilibrium, but thats not to say that my ideas about are necassarily correct, just that what I learned about it seems more logical in the context described by Gould than does gradualism. If another theory comes along with a little more science to back it up, we should all be open to evaluating it.

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    6. Re:Pardon my ignorance but by the+gnat · · Score: 3, Insightful

      It takes drastic environmental change to knock everyone out of that local maximum and maybe look for a new one.

      I've never been clear on the distinction between P.U. and catastrophism (not in the Velikovsky sense, though). When I first learned about the fossil record, a major point was the mass extinctions that have occurred throughout history. The "Cambrian explosion" is thought to have followed the extinction of >80% of all species, where entire phyla were wiped out. Perhaps not coincidentally, all modern phyla were present in the Cambrian era. (If memory serves there were several even worse extinctions that followed.) The naive but obvious conclusion I drew from this is that massive changes in ecosystem and depopulation of niches increased the potential for adaptive radiation as organisms moved into new niches. This would also mean that more mutations might yield an increase in fitness, since what determines fitness would be so drastically different. In a stable ecosystem, in contrast, niches don't get emptied or added and hence populations stay more static.

      Is this part of the modern evolutionary theory? (I am a biophysicist, but I don't know much about evolutionary theory.)

    7. Re:Pardon my ignorance but by Eccles · · Score: 1

      In a stable ecosystem, in contrast, niches don't get emptied or added and hence populations stay more static.

      But the earth isn't that static. Ice ages, volcanos, forest fires, floods, earthquakes, tsunamis and the like can all dramatically change an ecosystem. Moreover, consider that a mutation in one species, once it becomes widely propogated, might trigger a stress on a predator or prey of that species. PU is small-scale, catastrophism is large; catastrophism is also more likely to wipe out all members of a particular species.

      I am not a trained biologist.

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    8. Re:Pardon my ignorance but by gansch · · Score: 4, Insightful

      Although this is similar to punctuated equilibria, it is not appear to be identical. In punctuated equilibria, there are periods of statis with little evolution of new species, interspersed with periods of rapid speciation in many species. This theory seems to apply more to single species, in which the number of individuals with a recessive mutation reach some sort of critical mass, at which time the recessive trait manifests itself and speciation occurs.

    9. Re:Pardon my ignorance but by Eccles · · Score: 0, Offtopic

      And by now, he smells like one too!

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    10. Re:Pardon my ignorance but by Elwood+P+Dowd · · Score: 2, Informative

      MrFlibbs' highly rated comment above is suggesting that this theory says environmental stresses could lead to simultaneous mutations in different members of the same species, and the species wouldn't necessarily need a common ancestor for each individual gene. That's certainly different from punctuated equilibrium.

      There's nothing in the article that leads me to that reading, though, so yeah, either MrFlibb read the actual research and found something more than the article, or this sounds like total crap.

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    11. Re:Pardon my ignorance but by sp3d2orbit · · Score: 1

      Isn't that simply punctuated equilibrium?

      No, you're abosolutely correct. But you have to look at this from the point of view of the newspaper. They're just trying to ride the intelligent design wave by pointing out good working science. In fact, I don't think that there is a serious evolutionary biologist out there that disputes punctuated equilibrium as a good, solid theory.

      Most notably, the legendary biologist Stephen Gould has written extensively on the subject. Anyone with even a basic interest in evolutionary biology should pick up one of his books. There's a good list at the end of the wikipedia article, but I wouldn't recommend his latest book (The Structure of Evolutionary Theory) for anyone but the most dedicated.

      For those not in familiar with punctuated equilibrium, its a refinement of Darwin's original theory, not a dispute. Whereas Darwin said that species tend to change gradually overtime, Stephen Gould argued that species are static for long periods of time (equilbrium) until something dramatic happens (the punctuation). He argued that species evolve relatively quickly during events like ice ages, famines, massive volcanoes, meteor strikes.

      Evidence for punctuated equilibrium is littered throughout the fossil record. P.E. is the only theory (that I know of) that adequately explains why for billions of years life was single celled and simple. Then, during the Precambrian Explosion some 500 million years ago, life exploded into every form of multicellular life seen today. During those few million years every phyla in existence today came onto the scene. According to P.E. life was stable and single celled until something pushed life from one stable equilibrium to another.

      This isn't to say that P.E. rules out slow gradual changes, it simply explains fossil evidence showing a rapid change. But, by rapid change, I'm still talking about millions and millions of years, not something that happened over a work week.

    12. Re:Pardon my ignorance but by Anonymous Coward · · Score: 0

      I could make an analogy to simulated annealing here, but I won't since it's somewhat malformed.

    13. Re:Pardon my ignorance but by Lifewish · · Score: 2, Funny

      imagine a differentiable manifold

      You aren't a mathematics student by any chance are you? I hope to god you are otherwise I shall lose all faith in the human race...

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    14. Re:Pardon my ignorance but by poopdeville · · Score: 1

      No longer a student. :-)

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      After all, I am strangely colored.
    15. Re:Pardon my ignorance but by Anonymous Coward · · Score: 0

      For the uninitiated, imagine a differentiable manifold called 'utility'

      Ouch! Your "initiation" is more like a hazing.

    16. Re:Pardon my ignorance but by fbjon · · Score: 1
      Darwin, theory of evolution, I sense an obligatory post coming...

      Punctuated Design!
      ... No, doesn't make sense.

      Intelligent Punctuation!
      ... No, not on slashdot.

      Designed Equilibrium!
      ... Ah, there it is!
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    17. Re:Pardon my ignorance but by poopdeville · · Score: 2, Interesting
      I'm a mathematician, not a biologist. But I've studied all sorts of models of evolutionary development as part of a computational class in the philosophy of life and artificial life. From what I've gathered, your insights are indeed a part of modern evolutionary theory. However, the theory is very fragmented. As I mentioned, there are many competing models for evolutionary development that fit within the known empirical data. They're all nice models, but more information is needed before any one of them can be chosen as the favored model. In particular, there is no known mechanism causing sudden and massive evolutionary shifts of the sort necessary for punctuated equilibrium to occur. They just seem to sort of happen, even in the computational models. (Cue rants about intelligent shifting)

      If you're interested in this material, take a look at "An Introduction to Artificial Life" (I think) by Adami. Mark Bedau's work is also very accessible (though I might be biased since he taught the class). Last I checked, the wikipedia entry on artificial life was pretty good, and had a lot of other references.

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      After all, I am strangely colored.
    18. Re:Pardon my ignorance but by vitamine73 · · Score: 1

      Evolution drives to maximize utility

      Actually, no! this is a comment misconception: in biology 'evolution' only means change. This can be result of both random and directed ('driven' to use your phrasing) processes. Examples of random processes are mutation, which generates genetic diversity within a population, and genetic drift, which reduces genetic diversity within a population. Natural selection however is a driven process by which individuals that perfom better then others (because they have better survival, fecundity and reproductive success) contribute more to the genetic composition of subsequent generation, hereby changing the genetic composition of these generation (nb: selection can both reduce or maintain genetic diversity, it cannot create genetic diversity within a population). You are talking about natural selection and are impliyng that evolution == natural selection, which it is not!

      The environnement shift you are referring to is just one of many processes put forward by Gould and Eldredge to back their theory. Another important one does not rely on natural selection at all: in peripatric speciation a small part of a large population is somehow cut off from this main population, genetic drift (the random loss of alleles in a small population) and the absence of gene flow between these population leads to the rapide appearance of a new species.

    19. Re:Pardon my ignorance but by poopdeville · · Score: 1

      You are correct. I was purposefully being simplistic for explanatory reasons.

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    20. Re:Pardon my ignorance but by plunge · · Score: 1

      "We've know for decades that simple mutation-and-selection doesn't drive change anywhere near fast enough to account for history. The current theory as I know it as a layman is that occasional periods of rapid change are needed, and no biologist has believed in "Darwinian" evolution for generations."

      You've pretty much got most of that wrong. First of all, observed rates of morphological change are many times FASTER than even the fastest transition in the fossil record. The problem isn't that changes happen too fast, it's that there is too much statis. The debate over phyletic gradualism vs. more "jumpy" evolution was indeed resolved a long time ago, but it's hard to find a reason to say that either are especially "Darwinian."

      Darwin didn't really have much to say in the debate over phyletic gradualism and punk eek. Darwin never looked at the pace or history of evolution all that much, since he didn't have the detail or sort of information later zoologists had. He spoke about gradualism in terms of the way it was used in geology: small changes accumulating. Thats a description of microevolutionary change. Phyletic gradualism was a macroevolutionary theory about the PACE of change: that it was steady and stable. THAT is what got tossed out.

    21. Re:Pardon my ignorance but by plunge · · Score: 1

      If thats all they are saying, then what is all this stuff about "challenging evolution" or dogmatism and all this other nonsense. At most, this guy is presenting a new mechanism for variation wherein certain "good trick" stressors cause similar mutations in certain circumstances. Frankly, sounds pretty implausible to me, but even if it were true, I don't see how we get from there to "indoctrination" and al this othre nonsense. This guy sounds like a bit of a crackpot as far as his rhetoric goes.

    22. Re:Pardon my ignorance but by plunge · · Score: 1

      "Whereas Darwin said that species tend to change gradually overtime, Stephen Gould argued that species are static for long periods of time (equilbrium) until something dramatic happens (the punctuation). He argued that species evolve relatively quickly during events like ice ages, famines, massive volcanoes, meteor strikes."

      As many people have pointed out, Gould overplayed his hand on this. Darwin's "gradualism" was essentially borrowed from geology: it was in contrast to catastrophism. But it doesn't necessarily imply steady, even speed change. THAT idea, known as phyletic gradualism, was popular in the early 20th century, and it is THAT which scientists now agree is bogus.

      "P.E. is the only theory (that I know of) that adequately explains why for billions of years life was single celled and simple."

      If this is what people are saying about PE, then they are being very deceptive. Life was indeed single celled for a long time, but there's no special reason to think that this is troubling, and it certainly doesn't mean that it was simple. The basic mechanisms of cells are no small matter at all, and a HUGE a part of our genome is spent on defining these sorts of functions. In some sense, all the supposed more complex features are just afterthought and minor additions, at least in terms of the genome. Multicellularity may seem important to us, but to a genome, it's just another trait, and there's no inevitability about it.

      "Then, during the Precambrian Explosion some 500 million years ago, life exploded into every form of multicellular life seen today."

      The PREcambrian explosion?! It was the Cambrian explosion that got people all worked up (the PreCambrian is basically everything prior to the Cambrian). But it hasn't really panned out quite as billed, and most of what people think about it is grossly misleading. In addition to finding plenty of precambrian precusors at this point, most people think that the major innovation of the Cambrian era was hard parts: things that fossilize easily.

      "During those few million years every phyla in existence today came onto the scene."

      Well... not really, and the significance one takes from this is probably based on being misinformed about the taxonomic system. Every living thing at ANY period HAS to have had ancestors in the past. The more distant of these ancestors have higher level taxonomic classifications because thats how taxonomy works: species build out the bottom of the tree, off the tips of the branches.

      It looks like the mess Gould made of educating people about biology is alive and well.

    23. Re:Pardon my ignorance but by PsiPsiStar · · Score: 1

      David Raup proposed that an environment that was too stable could lead to extinction when it finally changed. Organisms fed a diet of change will be able to adapt to change while those given a static environment will not. This isn't really an answer to your question (or even a proven theory), but relevant perhaps...

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    24. Re:Pardon my ignorance but by hotspotbloc · · Score: 2
      FTA:
      "If you look at the fossil record, organisms didn't gain new items like teeth and jaws gradually," Schwartz said. "It's not like fish developed bony teeth one piece at a time. It happened suddenly."
      BitterAndDrunk said:
      "Isn't that simply punctuated equilibrium?"
      Bingo! Stephen would be quite pround of you. =)

      http://en.wikipedia.org/wiki/Punctuated_equilibriu m
      http://en.wikipedia.org/wiki/Stephen_Jay_Gould

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    25. Re:Pardon my ignorance but by rben · · Score: 1

      What sounds wrong to me is the claim that since cells protect themselves against change, they won't change slowly over time. It's well documented that radiation and chemicals can cause mutations, despite whatver protective measures the cells have. It's those mutations that have been thought to drive evolution. I'm not a paleontologist or anything, but it seems that all these guys are saying is that there are additional environmental stressors that might contribute to sudden change. As others have noted, this sounds like a rehash of Puntuated Equilibrium. When there are big changes in the environment, lots of species die off and you see lots of mutations. Eventually, the beneficial mutations create new species that fill in the gaps left by the ones that died off, or fill in new niches that have been created.

      We're living through a dramatic extinction event right now. Species are dying out at an incredible rate because of the way we have polluted the environment and destroyed habitats. Polar bears will be extinct by the end of the century because of global warming. The ice floes they depend on are disappearing. Amphibians have been dying out at an unprecedented rate. It's become a much rarer thing to find frogs and toads in the average suburban backyard now.

      We can also observe the adaptation of existing species to new environments: peregrine falcons in New York City, alligators in golf courses, skunks in suburbs. I've even noticed a species of moth in Florida that is colored exactly the same as the white concrete used around pools.

      I don't think that any modern biologist believes that Darwin understood everything about evolution, but what these guys are proposing isn't all that revolutionary and it certainly doesn't 'refute' Darwin.

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    26. Re:Pardon my ignorance but by Snaller · · Score: 1

      I'm so glad you explained it in simple terms.

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    27. Re:Pardon my ignorance but by ultranova · · Score: 0

      In particular, there is no known mechanism causing sudden and massive evolutionary shifts of the sort necessary for punctuated equilibrium to occur. They just seem to sort of happen, even in the computational models. (Cue rants about intelligent shifting)

      Imagine that life on Earth is a massively parallel computer program (J2EE container ?-), with every living thing being a separate thread, running in parallel with other threads and exchanging information with them. Is the behavior of this program predictable ?

      Of course not. Every now and then there will be some strange interaction between threads that will cause a sudden state shift in the program. While these shifts follow well-known laws of physics, they are impossible to predict, since it is impossible to define general rules for finding all conditions in which they can occur. Such a rule would basically state which information can be ignored when looking for shift events, and that would require figuring out every possible variable that might be significant for determinig if a shift occurs or not; since you can't ever be quite sure that you know all the circumstances they might occur, you can't possibly know if some piece of information is always insignificant. A shift-inducing event looks the same as a non-shift-inducing event, you can't tell them apart with a glance; consequently, there will always be shifts that you couldn't predict beforehand.

      Or to put it in other words: No detail is insignificant.

      Basically, it is just a lot of random variables happening to produce a large enough sum at some point in space and time to unstabilize the system.

      --

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    28. Re:Pardon my ignorance but by ThankfulJosh · · Score: 1

      Please pardon my ignorance as well, but aren't large, beneficial,systematic changes in an organism astronomically less likely than small beneficial changes (which are already staggeringly improbable)? And these professors want to make this statistically improbable mechanism a keystone of how life evolved?
       
      Punctuated equilibrium, or anything like it, is just wishful thinking until we can show a mechanism for massive, systematic DNA change that is more likely than randomness to help, not kill that organism before it reproduces.
       
      Frankly, I don't think natural selection, quick or not, fits the fossil record. Not that a 6k yr old earth theory does, either...

  2. Must... not... troll... must... debate... politely by Jim+in+Buffalo · · Score: 2, Funny

    Shifting environmental conditions which are, of course, controlled by the Intelligent Designer, allowing Him... I'm sorry, uh, it to create all these diverse forms of life in just six thousand... oops, did it again, sorry, a few million years. (Seriously, though, did you read some of the comments posted on that page that TFA is on? Yikes!)

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  3. Misleading, sensationalist headline. by TripMaster+Monkey · · Score: 5, Insightful

    The title of TFA reads, "Professor Challenges Evolution", when in fact he is doing nothing of the sort.

    From TFA:
    Schwartz refuted Darwin's theory of gradual evolution in organisms with one that states that evolution occurs quickly and suddenly as the result of cell mutations.
    While Schwartz is challenging a specific premise of evolutionary doctrine, he is by no means refuting the entire theory. Apparently, Nan Ama Sarfo felt the story would be read more if it appeared to jump on the anti-evolution ID bandwagon.

    Shame on you, Nan.
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    1. Re:Misleading, sensationalist headline. by yfkar · · Score: 1

      I was just going to say that. Man, you people are quick.

    2. Re:Misleading, sensationalist headline. by greginnj · · Score: 4, Insightful
      Shame on you, Nan.
      Don't blame Nan, the prof set her up:
      "Darwinism's presence in science is so overwhelming," Schwartz said. "For the longest time, there was no room for alternative thinking among the scientific community."
      Point one, he's feeding her the extremism, she isn't including it herself. Second, his second line is complete and utter bs. As others have noted, this warm-over of punctuated equilibria is a challenge to Natural Selection as the mechanism of evolution, not to evolution itself. Doing science is always about challenging the previous order -- it's only the stuff that's new and different that even gets published.

      But why is he doing this? Here's a clue:
      Jeffrey Schwartz -- a Pitt professor in the department of anthropology and the department of history and philosophy of science ...
      Hmm, interesting fields he's in. Just like Steve Fuller did in the Dover ID trial, some people in philosophy of science have a vested interest in creating the appearance of warring camps of ideas rather than evidence-based epistemology. To paraphrase them, 'science is about persuading people, not proving ideas'.

      One more thing,Schwartz has been pushing this idea for 6 years, it's not new news even for him:

      Book Review published in 7/2000
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    3. Re:Misleading, sensationalist headline. by yankpop · · Score: 1

      The researchers are either ignorant of 150 years of evolutionary research, or they're twisting things to make their work look groundbreaking.

      Darwin's contribution was to present the general framework for the evolution of new species. He did speculate on particular mechanisms, but it is crucial to note that he was completely ignorant of the genetics of inheritance. Not his fault, of course, Mendel's work wasn't rediscovered until decades after the Origin of the species was published, and the two viewpoints weren't really brought together until the 1920's or so.

      So it's very misleading to say that any idea that conflicts with Darwin's naive concepts of evolutionary mechanisms is in anyway challenging the current status quo. All it does is prove that the guys making the claims are out of touch. It's like finding an error in Galileo's work and claiming you have turned the entire field of astronomy on its head.

      yp

    4. Re:Misleading, sensationalist headline. by Anonymous Coward · · Score: 0

      This doesn't challange Natural Selection at all!

    5. Re:Misleading, sensationalist headline. by greginnj · · Score: 1

      Most users of the term 'Natural Selection' use it to refer to classic, gradualist, longer-and-longer-necked-giraffes, selection; in other words, Darwin's theory as stated by him. If you understand it to mean everything that includes 'differential survival to reproduce', that includes everything except Intelligent Design. Chill out, AC dude...

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    6. Re:Misleading, sensationalist headline. by sp3d2orbit · · Score: 2, Informative

      "As others have noted, this warm-over of punctuated equilibria is a challenge to Natural Selection as the mechanism of evolution, not to evolution itself. "

      I'm not sure what side you are on, but it needs to be made clear that punctuated equilibrium DOES NOT challenge natural selection as the mechanism for evolution. Punctuated equilibrium simply refines the time scales over which natural selection works.

      If, for example, the Great Rift Valley in Africa warmed significantly over a few hundred thousand years, this is a natural event. And, if that warming caused forest to turn into plains, this is a natural event. And, if that lack of forest cause certain monkeys to develop taller posture and longer gaits so that they could survive in the new climate, this is a natural event selecting better adapted species to survive. Both Darwin's original theory and P.E. are in agreement on the fact that nature selects the survivors; P.E. simply says that it can happen faster than we thought.

      P.E. makes total sense from a mathematicall standpoint. Imagine a cartesian plain (landscape) made up of peaks and valley representing the probability of an animal surviving given a certain set of features. Peaks are successful combinations of features, valleys are combinations that would lead to certain death. In other words, each peak is a niche. At the very beginning of life the landscape is open with successful niches. Randomly combining a set of features will put you, on average, halfway between a peak and valley. So long as no other creatures exists at a higher level on your particular peak, you are the most successful and will probably survive. Moreover, at the beginning of time, it is almost as likely for you to make a huge evolutionary jump and land at another successful niche at another peak. But, over time, creatures evolve to their niches and climb higher on the mountain. Over time it becomes mathematically unlikely to jump from one peak to another AND be more successful in that niche than the existing life forms. Creatures tend to become better and better adapted to their own peaks by making small, tuning changes.

      When the equilibrium is punctuated the landscape changes suddenly. Successful niches become deadly and vice versa. The probability of successfully jumping from one peak to another increases, and so does the apparent rate of evolution. That's why evolution seems to work in spurts. We see evidence of this happening again and again: the transition of single celled to multicellular, the age of amphibians, the age of reptiles, the age of dinosaurs (different), the age of mammals, etc. Each age represents a time when life jumped from one configuration to another quickly and then spent millions of years honing those features.

    7. Re:Misleading, sensationalist headline. by Anonymous Coward · · Score: 0
      The researchers are either ignorant of 150 years of evolutionary research, or they're twisting things to make their work look groundbreaking.
      ....or they want the DI to throw some research grants their way.
    8. Re:Misleading, sensationalist headline. by greginnj · · Score: 1
      Thanks for the detailed response. As for 'not being sure what side [I'm] on', it's one of those history/philosophy of science gags; you're supposed to be paradigm neutral. I understand the mechanism and math of punctuated equilibrium pretty well; I thought that in the last 20 years or so it's become the generally-accepted view. As I noted in another post:
      Most users of the term 'Natural Selection' use it to refer to classic, gradualist, longer-and-longer-necked-giraffes, selection; in other words, Darwin's theory as stated by him. If you understand it to mean everything that includes 'differential survival to reproduce', that includes everything except Intelligent Design.
      To add a bit, Darwin called his theory NS, so NS (according to my understanding of the contemporary usage) is just that gradualist theory, not any and all versions exhibiting selective pressure such as PE. This is why the ID people get all excited when people say that PE 'competes' with NS as an explanation of evolution. Of course, Schwartz' work is needlessly inflammatory no matter what labels you use...
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    9. Re:Misleading, sensationalist headline. by Rayge · · Score: 1
      Punctuated equilibrium is not a challenge to natural selection's role in evolutionary theory. It is expected to occur when environmental conditions shift in such a way that rampant, aggressive selection takes place amidst long periods of oscillating and/or stabilizing selection. The concept of punctuated equilibrium wouldn't work at all without selection, so what you're saying makes no sense.

      Doing science is always about challenging the previous order

      Doing science is about working hard to avoid spreading bad information.

    10. Re:Misleading, sensationalist headline. by shadowbearer · · Score: 1



        Pardon my ignorance, but can't all three theories be true, in that all of them (and likely other things we don't understand yet) be driving forces of evolution?

      SB

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    11. Re:Misleading, sensationalist headline. by mvdwege · · Score: 1
      "Darwinism's presence in science is so overwhelming," Schwartz said. "For the longest time, there was no room for alternative thinking among the scientific community."
      Point one, he's feeding her the extremism, she isn't including it herself. Second, his second line is complete and utter bs. As others have noted, this warm-over of punctuated equilibria is a challenge to Natural Selection as the mechanism of evolution, not to evolution itself.

      I seem to disctinctly remember Richard Dawkins attacking Punctuated Equilibrium as 'giving aid and comfort to Creationism'. So, no, the second line is empathically not bs, as there are followers of gradualism out there who do dismiss alternative evolutionary mechanisms as unscientific.

      The extremism exists in the scientific community, so Professor Schwartz has a point. I agree that the headline is oversensationalising the point though.

      Mart
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  4. Damn Professors! by commodoresloat · · Score: 4, Funny

    I don't want to start a holy war here, but what is it with these Pittsburgh professors repudiating the open source core of Mac OS X? Darwin is a solid UNIX foundation for a great operating system; if these professors can't see that, they must not understand how intelligently designed it is!

    1. Re:Damn Professors! by drfireman · · Score: 1

      I don't find that so objectionable, but the article portrays it as though they're repudiating my favorite graphical email client, which really seems to overstate their real claims.

    2. Re:Damn Professors! by Anonymous Coward · · Score: 1, Funny

      Darwin is a solid UNIX foundation for a great operating system; if these professors can't see that, they must not understand how intelligently designed it is!

      Ironically, Darwin evolved, as does all code, through intelligent design.

    3. Re:Damn Professors! by Eccles · · Score: 2, Funny

      Ironically, Darwin evolved, as does all code, through intelligent design.

      Umm, not all code...

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    4. Re:Damn Professors! by Anonymous Coward · · Score: 0

      Umm, not all code...

      Prove it. and I mean PROVE it. Don't just make a claim, P R O V E it. Assuming you can.

  5. Before this devolves into an ID blast-fest ... by MrFlibbs · · Score: 4, Insightful

    ... please RTFA. All the guy is saying is that sudden changes are brought about by environmental stress creating recessive genes, and these bring about rapid changes in a population after the recessives start combining in offspring.

    The only feature of classic Darwinism that he's refuting is about a single organism's offspring being the only one with the new trait. Interesting notion, but hardly revolutionary.

    1. Re:Before this devolves into an ID blast-fest ... by Elwood+P+Dowd · · Score: 1

      I don't hear him actually saying that environmental stress creates the same mutation in different ancestors. All I get from the article is punctuated equilibrium + conspiracy theory.

      Did you read the research, or is this just two different interpretations of some awful science writing?

      --

      There are no trails. There are no trees out here.
    2. Re:Before this devolves into an ID blast-fest ... by MrFlibbs · · Score: 1

      I didn't read the original research, and the frustrating thing is that the summary is so awful it's hard to understand. My interpretation of what they're saying is that mutations lead to new recessive genes instead of dominant ones. This means the the first generation of ancestors with the new gene don't display the new characteristics as they would with a new dominat gene. Then, after several generations when the recessive gene is possessed by a sufficiently large number of ancestors, many individuals appear in the same generation with the gene from both parents and thus there's a "sudden" appearance of many individuals with the new trait at the same time.

      At least that's what I understand the article to say. It's really pretty vague, so I may just be mis-reading it.

      Punctuated equilibrium is different in that it posits many mutations in a relatively short period of time. However, it's still based on new dominant genes appearing in the first generation.

  6. -1, deceptive headline by Stoutlimb · · Score: 4, Insightful

    How much more inflammatory can one get? The article should read "Scientists debate the details of how evolution happens." Talk about being deliberately inflammatory.

    1. Re:-1, deceptive headline by JohnFluxx · · Score: 1

      I'm equally fed up of these sensationalised headlines.

      Please, everyone, email Zonk at games@slashdot.org and tell him to stop doing this. This is just too annoying.

    2. Re:-1, deceptive headline by arminw · · Score: 1

      ......"Scientists debate the details of how evolution happens." ......

      True science involves experimentation thereby exploring the underlying laws of nature. Until a few hundred years or so ago, scientific philosophers debated about how fast light went, how things fall, the nature and position of the planets alongside with how many Angels could dance on the head of a pin etc. Then a few daring individuals did experiments that shattered, to the great chagrin and fierce resistance of these "scientists", many of the then held "scientific" ideas. The laws of electricity, light, biological reproduction of cells and many more were determined by repeatable, consistent experiments. Einstein's and quantum theories seemed implausible at the time they were first proposed, but have since been verified by countless experiments.

      Evolution and ID are philosophical or religious notions of how things came to be, but are not science, since neither have been nor can be demonstrated or refuted by experiment. Experiments or observations of the great adaptability of organisms do not demonstrate true Darwinian evolution as commonly preached in our classrooms today. The whole concept of man having crawled out of the primal ooze is a figment of scientific philosophers imagination. No experiment has EVER been done to demonstrate even ONE of the many steps along the way.

      Only an experiment taking two distinct creatures and making out of them and entirely new, very different third would demonstrate true evolution. Take an amoeba and a paramecium, both "simple" single celled and make a new single celled or multi-celled organism that never existed before. Genetic science has shown that there are certain group barriers that prevent coming up with new, viable, reproducing life forms.

      Even the origin of life itself cannot be shown experimentally. Nobody has ever taken any mixture of elements, none of which have ever been part of something alive, and created any life. Using chemicals that had been part of a living organism does not make life from non-life. Even making a self sustaining living cell out of a mixture of amino acids have never been done in a lab.

      If any of the above experiments were successful, it would only show that careful planning, ie, intelligence are required, not some nebulous mechanisms that took place over eons of time according to pure chance.

      Darwinian evolution and ID are not based on science which requires EXPERIMENTS, but philosophies based on faith and as such should BOTH be taught in religion or philosophy classes and not pawned off as "science".

      --
      All theory is gray
    3. Re:-1, deceptive headline by Anonymous Coward · · Score: 0

      +6, Funny as hell

    4. Re:-1, deceptive headline by Dimensio · · Score: 1

      Evolution and ID are philosophical or religious notions of how things came to be, but are not science, since neither have been nor can be demonstrated or refuted by experiment.

      Evolution could have been refuted by contradictory finds in the fossil record. Recent discoveries of ERV insertions in primate DNA could have blown common descent out of the water. Instead, ERV insertion observations added yet more compelling evidence for primate evolution, including humans.

      Lying about evolution and lying about science in general isn't going to win you any points.

    5. Re:-1, deceptive headline by arminw · · Score: 1

      .....Evolution could have been refuted.... ....Evolution could have been refuted....

      Neither evolution, creationism or ID have been proved or refuted by repeatable EXPERIMENTS, such as are done in other branches of science. All of them are philosophies, not science. You may be more comfortable with one of these, but NONE of them are supported and tested in the LABORATORY, such as other real sciences are. REAL science is repeatable. Einstein's theories seemed far out when first put forth, but have been EXPERIMENTALLY verified countless times. The esoteric Quantum theory STILL doesn't make sense to most people, but has been shown to be true by multiple experiments by many REAL scientists in real laboratories. Evolution, creationism or ID will become real science on the day their various beliefs are demonstrated by repeatable experiments.

      I'm not saying evolution is true or false. It's just not science, but philosophy. You can hold whatever philosophical or religious position you wish, just don't call any of these science. Science is done ONLY by experiments to reveal TRUTH. Evolution, ID, creationism are conjectures to which varying numbers of people subscribe. Just because some of these people who believe a particular conjecture are labeled "scientists", does not make them so.

      --
      All theory is gray
    6. Re:-1, deceptive headline by Dimensio · · Score: 1

      .....Evolution could have been refuted.... ....Evolution could have been refuted....

      Yes "could have been". As in the potential existed. But it wasn't refuted, because the evidence didn't contradict it.

      Neither evolution, creationism or ID have been proved or refuted by repeatable EXPERIMENTS,

      No amount of "experimenting" will "prove" any explanation in science. Absolutely nothing in science is ever proven. Claiming that evolution is not science because it cannot be "proven" only demonstrates that you are fundamentally ignorant of how science works.

    7. Re:-1, deceptive headline by arminw · · Score: 1

      ....No amount of "experimenting" will "prove" any explanation in science. Absolutely nothing in science is ever proven......

      Experimentation by definition IS science. If a theory cannot be tested by experiment, it is a philosophy. Until a few centuries ago, philosophers argued back and forth about beliefs. After that, real science, based on experiments came to be, PROVED over and over again which beliefs were true. Philosophers and religious teachers speculate and argue, but Scientists try to discover TRUTH about the world we live in. That can only be done by carefully designed, multiple experiments that show which ideas predict what the results these might show in their outcomes. If a particular set of conditions always results in a consistent outcome, that is generally accepted as PROOF that the theory behind the experiment is correct. We KNOW the speed of light is about 3^10^8 meters per second, because it has been measured numerous times by many real scientists.

      Evolution, ID or other theories of origins have NO such multiple experimental results to back up their philosophical claims and therefore by DEFINITION are not science. Therefore, NONE of them should be misrepresented as science, since there is no repeatable experimentation to PROVE any one of them is right.

      --
      All theory is gray
    8. Re:-1, deceptive headline by PsiPsiStar · · Score: 1

      the only thing I like about Slashdot is the way you nerds have 'Lord of the Flies'ed yourselves into a pecking order like any other social group, and it's only amusing because so many of you pretend to be above that shit.

      You really think nerds pretend to be above that? I don't. They just want the pecking order to be based on different criteria.

      --

      ___
      It's the end of my comment as I know it and I feel fine.
    9. Re:-1, deceptive headline by BobTheLawyer · · Score: 1

      What a strange definition of science. And which scientific theories do you think have ever been "proved"?

      Your use of capital letters is very convincing, but the idea that "science" excludes evolutionary biology, geology, cosmology and linguistics (and the other historical sciences) is a strange one. All these endeavours make testable, falsifiable predictions and are therefore science by any reasonable definition.

    10. Re:-1, deceptive headline by arminw · · Score: 1

      ....And which scientific theories do you think have ever been "proved"...

      -> The theories of electrodynamics, which have resulted in all the wonderful gadgets, such as the computer you are now reading this on. -> The theory of nuclear fission, which has resulted in weapons that could destroy mankind.
      -> The theories behind the chemical reactions of both life and non-life, that make possible the modern materials all around you.
      -> Einstein theories and quantum theories have been experimentally verified. I'm sure, anybody can come up with a long list of others.

      (......All these endeavours make testable, falsifiable predictions and are therefore science by any reasonable definition......)

      Some on your list have been tested by experiments. Cosmology operates along well tested principles of physics. The thermonuclear reactions in stars have been reproduced in the lab and by bombs. The same laws of gravity that determine how rocks fall, also apply to stars, planets and galaxies. Geological processes can be duplicated in the lab and in the field. Diamonds, coal, erosion, wave action and other features of geology have been experimentally proven.

      Evolutionary biology has never been tested by experiments, to be either true or false. Nobody has ever taken two distinct life forms and made a third one according to the predictions of this conjecture. Nobody has ever demonstrated by experiment the creation of life from the non-living elements. To the extent that any of the processes of a given theory have been experimentally verified, to that extent, these theories qualify as science.

      --
      All theory is gray
    11. Re:-1, deceptive headline by Dimensio · · Score: 1

      -> The theories of electrodynamics, which have resulted in all the wonderful gadgets, such as the computer you are now reading this on. -> The theory of nuclear fission, which has resulted in weapons that could destroy mankind.
      -> The theories behind the chemical reactions of both life and non-life, that make possible the modern materials all around you.
      -> Einstein theories and quantum theories have been experimentally verified. I'm sure, anybody can come up with a long list of others.


      Please list or reference the "proofs" that demonstrate that these theories cannot possibly be false.

      Evolutionary biology has never been tested by experiments, to be either true or false.

      Actually, it has. Experimental testing does not necessarily require replicating the entire process in a laboratory.

      Nobody has ever taken two distinct life forms and made a third one according to the predictions of this conjecture

      Uh, two distinct life forms producing a third one? I daresay that you're the product of such an "experiment". If you didn't mean standard reproduction, then perhaps you could explain exactly what you do mean.

      Nobody has ever demonstrated by experiment the creation of life from the non-living elements.

      Irrelevant. The theory of evolution says nothing whatsoever about "the creation of life from the non-living elements".

    12. Re:-1, deceptive headline by arminw · · Score: 1

      .....Uh, two distinct life forms producing a third one?....

      OK I should have said two DIFFERENT life forms, or take two or more identical single celled creatures such as say an amoeba, and make an entirely NEW, complex multicellular, viable organism. Make a bird out of two or more reptiles, since evolution claims that birds descended from reptiles. Do an experiment showing evolution of the complex from the simple.

      --
      All theory is gray
    13. Re:-1, deceptive headline by Dimensio · · Score: 1

      OK I should have said two DIFFERENT life forms

      I still don't understand. My parents are two DIFFERENT life forms, and they produced me.

      or take two or more identical single celled creatures such as say an amoeba, and make an entirely NEW, complex multicellular, viable organism.

      In how many generations? And why use amoebas, when likely multicellular life sprang from bacteria cells, not amoebas.

      Make a bird out of two or more reptiles, since evolution claims that birds descended from reptiles.

      Again, in how many generations?

      Do an experiment showing evolution of the complex from the simple.

      You are apparently mistaken as to how science operates. You don't need to be able to experimentally reproduce every theorized event in order to establish confidence that such events occured. All you need to do is provide a justified explanation of things that should be observed as a result of common descent and then demonstrate such observations. Example: the established lineage of primate evolution predicts that if an ERV insertion is found at at the same location in orangutangs and chimpanzees, that insertion must also exist in humans and gorillas. Thus far, genetic sequencing has confirmed exactly that.

    14. Re:-1, deceptive headline by arminw · · Score: 1

      ....in how many generations? And why use amoebas....

      Use as many generations as you can. Use *any* single or multi-celled one life form. Prove by any experiment whatever, the main evolutionary dogma of the complex arising from the simple. Do only ONE such experiment and you will have validated evolution's guiding principle.

      This dogma is in direct opposition to the established fact of entropy pushing all things from the complex toward the simple. We get older and wear out. Everything breaks down from order to disorder as time goes forward.

      My Honda has wheels at the four corners, therefore it descended from my old Ford which has them, which came from my even older Volkswagen, which also, strangely, has exactly four, not three or six. They also all have steering wheels and other components common to cars. All airplanes also have wings and therefore descended from the Wright bothers flyer.

      --
      All theory is gray
    15. Re:-1, deceptive headline by Dimensio · · Score: 1

      This dogma is in direct opposition to the established fact of entropy pushing all things from the complex toward the simple. We get older and wear out. Everything breaks down from order to disorder as time goes forward.

      So how do crystals form? How does an adult human form from a less complex zygote?

      The "2nd Law of Thermo" bullshit is an old creationist canard that is exposed as bogus with just a little bit of critical thinking.

      My Honda has wheels at the four corners, therefore it descended from my old Ford which has them, which came from my even older Volkswagen, which also, strangely, has exactly four, not three or six. They also all have steering wheels and other components common to cars. All airplanes also have wings and therefore descended from the Wright bothers flyer.

      None of the objects you have mentioned are capable of producing offspring, much less passing variable traits to said offspring. As such, your analogy is inane and stupid, and your use of it demonstrates a fundamental lack of critical thinking ability.

    16. Re:-1, deceptive headline by arminw · · Score: 1

      ......So how do crystals form? How does an adult human form from a less complex zygote?......

      Crystals formation follows well established physical laws of atomic interactions. The information is stored in the laws of physics in the case of crystals. For humans, all the information needed is stored in the genetic program and the laws of physics and chemistry by which these codes are acted upon.

      To counteract entropy always requires two elements. One is the input of energy and the other is the adding of information. When you clean up the mess in your house, you expend energy and apply information, a product of mind, to decide what to do with the stuff.

      Both the laws of physics and the human genetic programming are a product of mind, the programmer if you will. The program in your computer is an immaterial product from the programmers mind, which the hardware executes for you.

      --
      All theory is gray
    17. Re:-1, deceptive headline by Dimensio · · Score: 1

      To counteract entropy always requires two elements. One is the input of energy and the other is the adding of information. When you clean up the mess in your house, you expend energy and apply information, a product of mind, to decide what to do with the stuff.

      That's interesting. It's well established that local entropy can only decrease with additional input of energy into a system, but I've never heard of "information" also being required. Could you cite the scientific law that you are referencing that includes a requirement of "information" to counteract entropy?

    18. Re:-1, deceptive headline by arminw · · Score: 1

      .....I've never heard of "information" also being required....

      Increasing entropy also decreases the order of a system. In thermal terms, heating one end of a metal bar increases the "order" over its previous state. As time goes on however, temperature distribution becomes uniform. its entropy increases and the order decreases.

      If time suddenly started going backwards, say for an hour or two, how would you know? The motions of the planets and clocks would not change. What would change? What test could you apply that time itself had reversed? Here is a test.

      Throw say three well shuffled decks of cards into the air, as high as possible. Now if ALL the cards came down in exact numerical order, or any other clearly discernible order, say by suit etc. you'd know something extremely strange was going on. Because entropy (disorder) always increases with time, therefore if entropy suddenly decreased, it would mean that time is going backwards.

      An ordered system always contains more information than a disordered one. If you have a loose collection of say airplane parts which you wish to turn into a functional plane, you not only have to supply the needed energy to move the parts around, but even more importantly, you'd have to supply information on exactly where each part is supposed to fit.

      If (when :)! your house gets messy you not only have to supply energy to move the randomly scattered socks, papers, used coffee cups and other things around, but you also supply information to put them in their proper places.

      Living systems are highly ordered, by the adding of energy (from food or sunshine) combined with large amounts of information stored in DNA codes, analogous to a computer program, on exactly where and how this energy should be applied to achieve a goal, say like survival and reproduction.

      Since evolution attempts to explain origins apart from the activity of mind, it is at a loss to determine where the tremendous amount of information implied in highly ordered living systems comes from. It is like finding a computer with complex programs inside and not wishing to acknowledge the existence of programmers. To make a complex system from simpler parts always requires energy and more importantly, some information on exactly where and how this energy needs to be applied in order to achieve the more complex system. Nobody denies that all human creative activity first arises in a human mind. All the complex gadgets we use today came to be by processes of thought in a human mind. Why then is it so unreasonable to theorize that the unimaginably more complex structures and systems we see in nature also first arose in a mind, one far greater than any human mind? Neither this theory nor the mindless evolution theory have been tested by experiments however.

      --
      All theory is gray
    19. Re:-1, deceptive headline by Dimensio · · Score: 1

      Increasing entropy also decreases the order of a system.

      That's kind of a consequence of entropy, yes.

      I could counter your "information" claims with crystal formation, but you've already decided that the "laws of physics" are a form of information without justifying it. It's a convenient excuse to claim that laws of physics are additional "information" and then deny that there might be "laws of biology" (or even the same "laws of physics" acting on biological life forms) to allow evolution to occur. Could you perhaps justify the claim that the laws of physics are a form of information when it comes to crystal formation, but that they cannot apply to DNA structures?

    20. Re:-1, deceptive headline by arminw · · Score: 1

      ......Could you perhaps justify the claim that the laws of physics are a form of information when it comes to crystal formation, but that they cannot apply to DNA structures?......

      Many kinds of atoms and molecules form crystals simply because of their shapes, either individually or in small repeating clusters. You can demonstrate this by having a tray each of small triangular, circular and square tiles respectively. Shake each tray for a while and you'll see that the various shapes tend to cluster themselves together in certain repeating, regular patterns. If you put all the shapes together on a single tray you will also see the shapes aggregate into clusters, but the clusters will be much smaller and less distinct

      Similarly, as atoms or molecules of a given kind in a melt or solution jostle randomly they tend to aggregate in certain repeating patterns as dictated by their shape and binding energies of the electrons. There is really no other information involved besides the intrinsic geometry of the atoms or molecules. The more pure the melt or solution, the larger the crystals will grow. Silicon crystals for chips, for example, are grown from highly purified silicon under very carefully controlled conditions. A very tiny numbers of certain other atoms are added to turn an otherwise insulating solid into a semiconductor.

      In living systems the different kinds of atoms are arranged by complex codes into the non-repeating structures needed to achieve a set of functions and goals. The information content of even a single cell is staggering, compared to non-living molecular structures. A comparison might be three or four alphabetic letters repeated in a given sequence over and over against all letters of the alphabet arranged into the words and sentences of Tolstoy's "War and Peace" or other great literary work.

      Even the laws of physics demonstrate an amazing coherency and precise relationships to each other. However, by themselves they do not contain anywhere near the immense amounts of information that are required to form even the simplest living systems.

      --
      All theory is gray
    21. Re:-1, deceptive headline by Dimensio · · Score: 1

      So essentially crystal formations are structures of molecules that, because of the fundamental physical properties of the universe, tend to form in distinct patterns. Meaning that they essentially replicate their structure over and over again.

      Odd, that's essentially what life does. In fact, the simplest "life forms" -- if they could really be called alive -- essentially only do that. They just do it in a slightly different way than crystals.

      So really, if you look at DNA, it's just a series of molecules that happen to be structured in such a way as to continually replicate themselves (as in they create additional chains of molecules that look like the original). One difference is that the replications may not be perfect. However, if the replications are still sufficient to continue replicating on their own, then the imperfection of the replication doesn't really matter. In fact, if the change in replication creates an advantage -- perhaps in a universal sense or perhaps in a sense dependant on environmental conditions -- then that particular permutation may become dominant over the original. Hmm. There's a name for replication in such a pattern, but I can't quite remember...starts with an "e".

    22. Re:-1, deceptive headline by arminw · · Score: 1

      ......So really, if you look at DNA, it's just a series of molecules.....

      The problem is that the DNA is just an information carrier, similar to a floppy disk or CD. It carries the information on how to make the molecules from which it itself is constructed. Sort of like the a CD that carries the info on how to build a CD reader/recorder. The question is: Which came first, the complex molecules which make the DNA or the DNA which holds the information on how to construct these molecules. Of course in the case of the CD, we know the builders designed both of them together -- one did not come from the other.

      Since evolution denies the existence of a designer, it cannot explain which came first, the DNA or the assembly of molecules it is made of. It is the molecular chicken and egg problem.

      --
      All theory is gray
    23. Re:-1, deceptive headline by Dimensio · · Score: 1

      The problem is that the DNA is just an information carrier, similar to a floppy disk or CD.

      So you're saying that DNA itself does nothing?

      It carries the information on how to make the molecules from which it itself is constructed.

      So how, exactly, does it manage to reproduce?

      Since evolution denies the existence of a designer,

      Actually, it doesn't. It simply describes a natural process by which diverse species emerge from common ancestry.

    24. Re:-1, deceptive headline by arminw · · Score: 1

      ......So you're saying that DNA itself does nothing?......

      I am not quite sure what you mean here. Like a disk it carries information of every living thing. It also carries the information on how to make the building blocks for its own construction and how to do the actual constructing of the readout and data handling systems that then guide the construction of complex things like eyes and ears.

      You have to understand that information and the devices that carry it are distinct. The exact same information to do something can be carried and stored by numerous devices. DNA just happens to be a universal recording and transmission medium for data related to building and maintaining living systems.

      Information per se is not subject to some of the laws of physics that material objects are. Information is not subject to entropy and therefore to time. Only the carriers are subject to both. Computer scientists take great pains with check sums, cyclic redundancy and other advanced techniques, to ensure that information is not lost or altered by the unavoidable imperfections of physical information handling systems. If information in and of itself were subject to entropy, these techniques would not be able to prevent loss or corruption of the data. The DNA also uses similar techniques to guard the integrity of the data storage and transmission. Also, DNA uses a 4 level code, rather than binary, such as our digital computers. Nevertheless, even so, errors can and do occur in man made and natural data processing. The goal is to make the error rate acceptably low.

      The speed at which information can travel is only limited by the fastest physical carrier thereof. So far at least, that is the speed of light.

      If evolution allows for the existence of a designer, why then are evolutionists fighting the idea of ID and a Creator so strenuously? Admitting the existence of a designer, implies at least a supernatural beginning and that such a designer might tweak the design now and then. The evolutionary ideas of ORIGINS cannot be proven by science, while other aspects of evolution theory can be. Discussion of origins is beyond hard science and becomes a belief system.

      --
      All theory is gray
    25. Re:-1, deceptive headline by Dimensio · · Score: 1

      I am not quite sure what you mean here. Like a disk it carries information of every living thing. It also carries the information on how to make the building blocks for its own construction and how to do the actual constructing of the readout and data handling systems that then guide the construction of complex things like eyes and ears.

      But a disk alone does nothing. Clearly there's more to DNA than just information storage. Information alone doesn't do anything, so how can DNA replicate if it's just a storage medium?

      If evolution allows for the existence of a designer, why then are evolutionists fighting the idea of ID and a Creator so strenuously?

      ID is fought because it's a fundamentally bogus theory. The very foundation of "irreducable complexity" is easily debunked. ID's foundation is garbage. A "Creator" is even worse, because there's no positive evidence whatsoever for the claim. Neither ID nor a "Creator" are scientific claims. They might be true, but they fail to meet the criteria of scientific inquiry. ID pushers want to shove non-science into science classrooms. The opposition is to the fundamental dishonesty of calling non-science science.

      Admitting the existence of a designer, implies at least a supernatural beginning and that such a designer might tweak the design now and then.

      But there's no scientific basis for such a claim. As such, it's not science, and has no business in a science class. Science is about where the evidence points, not every infinite possibility simply because it "might" be true.

      The evolutionary ideas of ORIGINS cannot be proven by science, while other aspects of evolution theory can be.

      What are the "evolutionary ideas of ORIGINS"?

      Discussion of origins is beyond hard science and becomes a belief system.

      Justify this claim.

    26. Re:-1, deceptive headline by arminw · · Score: 1

      .....Information alone doesn't do anything, so how can DNA replicate if it's just a storage medium?.....

      DNA carries ALL information, including how to make the copying system and then copy itself and then copy the data needed to guide other processes of life..

      Evolution claims that the complex arises from the simple. Entropy says the opposite, that complex things break down into their simpler parts. So which theory is correct?

      To counteract entropy requires energy and information. Living things do this entropy reduction routinely by the above two acting TOGETHER. One or the other alone will not do that. Evolution has no explanation where the original information came from, since evolutionists deny the existence of a mind as the source.

      All programs arise in a mind, whether running in a computer, or the DNA programs running in your body. ID theorizes the original information came from the mind of a designer. The activity of mind in every nook and cranny of life leads me to BELIEVE that there is a Mind wherein all this vast amount of programming originated. Neither the lack of a designer, as evolutionists preach, nor the existence of one according to the ID theory can be proven by any true science experiment . Both are matter of belief.

      --
      All theory is gray
    27. Re:-1, deceptive headline by Dimensio · · Score: 1

      To counteract entropy requires energy and information.

      You keep asserting this, but you've not provided any hard information beyond simple single-case analogies. The Second Law of Thermodynamics states that a system's entropy never decreases without energy input, but it says nothing regarding "information". You need to substantiate your claim that the Second Law of Thermodynamics as it is presently stated is incomplete before you can justify your claims with your redefinition of it.

    28. Re:-1, deceptive headline by arminw · · Score: 1

      .....entropy never decreases without energy input.....

      Energy input alone is not enough, the energy needs to be applied in such a way that there is a gradient.

      Increasing entropy also decreases the order of a system. In thermal terms, heating one end of a metal bar increases the "order" over its previous state. As time goes on however, temperature distribution becomes uniform. Its entropy increases and the order decreases. Heat engines work because heat is applied in a specific way so there is a temperature gradient. The specificity of application in one place and not uniformly (randomly) constitutes information.

      Application of energy alone will not clean up your messy house. You also supply information of where to put the stuff. A complete collection of airplane parts will never become a working airplane by the application of energy alone. Additionally, information must be supplied where each part should fit.

      To reduce entropy requires energy applied in specific, non-random ways.

      --
      All theory is gray
    29. Re:-1, deceptive headline by Dimensio · · Score: 1

      So please explain why the Second Law of Thermodynamics does not include any requirement of information input to decrease entropy?

    30. Re:-1, deceptive headline by BobTheLawyer · · Score: 1

      "To counteract entropy always requires two elements. One is the input of energy and the other is the adding of information".

      This is completely baloney - where are you getting this stuff from? The second law of thermodynamics relates entropy to heat/energy and time - information is not part of the second law of thermodynamics.

    31. Re:-1, deceptive headline by arminw · · Score: 1

      ......Second Law of Thermodynamics does not include any requirement of information.....

      I suggest you read the article in the link below. Pay special attention to the section on "Entropy and disorder", "Disorder and the second law of thermodynamics " and most importantly, "The arrow of time".

      http://en.wikipedia.org/wiki/Entropy

      The part on 'Maxwell's Demon' and Information will also tell you in other terms that I have that information is very much involved with entropy.

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      All theory is gray
    32. Re:-1, deceptive headline by Dimensio · · Score: 1

      Interesting Wiki entry. This particular bit caught my eye:

      "As stated above, when discussing entropy, the term disorder does not necessarily mean disorganization. Many textbooks utilize a bedroom as an example of a hypothetical system in which disorganization is spontaneously increasing, and those textbooks say this is an example of entropy. A statement like this must be carefully made or else it can be misleading. For example, if all of the socks in the room were in perfect rows in a drawer, would that configuration have less entropy than if the socks were strewn about the room? The answer is to be found in the Shannon definition of entropy. One must ask "how many distinct ways can socks be folded in the drawers", and "how many different ways can they be strewn about the room"? If these questions can be answered objectively, then the configuration with the most possibilities (probably the socks strewn about the room) would have the highest entropy, although this entropy would not be true thermodynamic entropy, but it would qualify as a type of information entropy."

      The Second Law of Thermodynamics, that principle that states that entropy always increases in a closed system, refers specifically to thermodynamic entropy (hence it being a law of thermodynamics). I recall you using examples about an arrangement of books in a room. That would pretty much make your example an invalid analogy, since you couldn't possibly connect that to thermodynamic entropy.

      It would appear then that you are applying the Second Law of Thermodynamics to information entropy. It also appears that you're trying to apply information entropy -- which relates to systems of human-defined concepts of "order" (such as words in a type of language) to molecular structures. But humans don't define molecular structures, so your application is clearly invalid.

      Tell me, why do you think that the world's biologists haven't considered your "brilliant" observations regarding "entropy loss" as evidence that evolution is false? You'd think that with literally thousands of biologists around the world, someone somewhere would recognize this apparently obvious principle.

    33. Re:-1, deceptive headline by arminw · · Score: 1

      ......You'd think that with literally thousands of biologists around the world, someone somewhere would recognize this apparently obvious principle......

      Just because a majority holds to a particular view, doesn't mean that is how things really are. How many theories held by every "reputable" scientist at the time, are now in the dustbin of false ideas.

      Evolution tries to apply to living systems what applies nowhere else -- namely that systems left to themselves become more complex, rather than breaking down into simpler components.

      Evolution teaches that over large spans of time, simple cells evolved into complex animals -- even eventually humans. No experiment has ever been done to prove even the smallest link in such an amazing chain of events. No assembly of individual parts, whether living or not, has ever been made into a complex functioning system without the instructions needed to do so.

      Even you, as an intelligent being will have problems putting together a working airplane, even if you were given each of the major subassemblies pre-tested, and all other parts and tools needed. You would also need detailed instructions, especially if you know little about airplanes.

      Yet evolutionists try to convince us and themselves, that complex living structures, such as brains, eyes, ears, circulatory systems and on an on all came into being without detailed instructions and knowledge of how put them all together. Hemoglobin molecules are very complex structures that have a very precise arrangements of atoms.

      The principle of entropy has far wider applicability than only thermodynamics.

      A quote from the WIKI article: "Unlike most other laws of physics, the Second Law of Thermodynamics is statistical in nature, and its reliability arises from the huge number of particles present in macroscopic systems. It is not impossible, in principle, for all 1023 atoms in a gas to spontaneously migrate to one half of container; it is only fantastically unlikely -- so unlikely that no macroscopic violation of the Second Law has ever been observed."

      Evolution of simple life forms into complex ones has also never been observed, and although not impossible, it is just as unlikely as the atoms all migrating to only one part of a container. If you have two such containers connected with a pipe, the pressure in both of them will be equal. If you replace the pipe with an intelligently designed power-driven pump, you can get all or most of the atoms into one container only. If you supply energy only, such as heating the pipe, there will be be an equal increase of pressure in both containers. Only the designed pump, supplying energy does the job.

      If time suddenly reversed for say an hour, how would you know? What experiment could you do that showed that time was going backwards? Hint: The "arrow of time" is in fact picked by entropy, not as the article states.

      Entropy and evolution as currently preached are fundamentally at odds with one another.

      --
      All theory is gray
    34. Re:-1, deceptive headline by Dimensio · · Score: 1

      Evolution tries to apply to living systems what applies nowhere else -- namely that systems left to themselves become more complex, rather than breaking down into simpler components.

      But it's already working based upon an already observed phenomenon: life forms self replicate. And I'd think that one life form of any kind is less complex than two of the same kind of life form. You can go on about how DNA is "information", but 1) you'll have to demonstrate that DNA is in some way designed and 2) you'll have to explain why DNA replicating imperfectly cannot produce evolution. It seems as though you're clutching on to the trappings of thermodynamics and insisting that evolution violates it based upon claims that would seem to put existing observed events at odds with your interpretation of thermodynamics, so you invent excuses to justify the events that are actually observed while still dismissing evolution.

      Are you capable of considering that you just might be mistaken about the implications of thermodynamics? Could you perhaps try to explain why it is impossible for multicellular structures to emerge through copying errors rather than just asserting it as being impossible?

    35. Re:-1, deceptive headline by arminw · · Score: 1

      .....rather than just asserting it as being impossible?.....

      I never did assert it is IMPOSSIBLE, just highly improbable. Complexity arising spontaneously out of simpler components is not impossible, just as the gas in a container example, but the probability of either happening are vanishingly small.

      DNA holds the information needed to carry on all structure and operation of a living creature. It is like the Software in a computer which carries out all the designs of the programmer(s). If you come across a functioning computer, you can study how it works, but no matter what you can do, there is no way you can determine how the software got into that computer by examining the computer as a closed system. You don't have the original CDs and it doesn't have a connection to the outside world. It's just running a very complex software program, of which you have no idea where that program came from.

      Just as the computer, we find finished, very complex functioning living systems, but have no way to determine where the complex software that runs them came from. Once the DNA software is running, it governs the reproduction of the hardware it runs on, as well as its own code. We can study and experiment with this and be astonished at the extreme complexity, but no experiment will find the originator of the software.

      Like all information, DNA is a product of mind, a mind greater than any human mind. This cannot be proven by any experiment and neither can evolution be proved by an experiment. Evolutionists find the computer with its software and then deny the existence of a programmer. ID and creationism theorize there is a designer and evolutionists deny there is, but neither can do an experiment to either prove or disprove their dogmas. One or the other is believed as a philosophy or religion.

      --
      All theory is gray
  7. Punctuated Equilibrium by CODiNE · · Score: 2, Insightful

    As has already been posted, this is a well known theory and as far as I know what the currently accepted evolutionary model suggests.

    I think the point he's making is that it's simply not being taught. I know plenty of people (especially on Slashdot) who still believe the old "millions of years of small gradual changes" bit. Natural selection and gradual modification MAKE SENSE to most people and seems fairly persuasive, but it's not really what happened. Honestly I think it's a bit of bait 'n switch... explain evolution one way to a person, then later on "Oh by the way nobody really believes that."

    --
    Cwm, fjord-bank glyphs vext quiz
    1. Re:Punctuated Equilibrium by JohnFluxx · · Score: 2, Insightful

      And I know lots of people who still think that momentum = mass * velocity. Maybe we should write an article saying that I've proved physics wrong because schools teach it incorrectly. Or maybe we should realise that people learn things in stages - simplistic explanation first.

    2. Re:Punctuated Equilibrium by lkeagle · · Score: 1

      Truly...

      All the things we are taught in high school are revealed as lies when we get to college...

      Then all the things you're taught when you started college turn out to be lies when you get to graduate school...

      The big problem is that people think they're being taught the truth. And the bigger problem is, even if you tell them up front that it's a lie, they forget and believe it anyway.

      I had an English professor once who told us a story about courses he used to teach to prison inmates. He would always perform an experiment on them, by telling them a story which he stated outright was a total lie. He then would reveal to them an elaborate yarn that the Mormon church was the source of illegal drug use in this country -- They go on 'missions' to bring the drugs in, they store them in 'temples' that no one else is allowed to enter, and they go door to door with backpacks peddling their wares. After about 10 minutes, he said it never failed that the majority of the people listening were flustered and outraged until he reminded them again that what he was telling them was all lies. (for all we know...)

      The point is, we should always question what we are taught. That's one of the tenets of scientific innovation. History has proven over and over again that even the most well-understood theories may only be scratching the surface of an even greater truth. We need to understand that science is flexible.

      In other words, no matter how deep we get into string theory and evolution, it's not going to change the fact that crap falls and Charlize Theron is hot.

    3. Re:Punctuated Equilibrium by plunge · · Score: 1

      "I know plenty of people (especially on Slashdot) who still believe the old "millions of years of small gradual changes" bit."

      There's nothing substantially wrong with that statement at all, as long as no one thinks that "gradual" means "evenly paced morphologic change." In terms of actual adaptive change, evolution is still the accumulation of small changes no matter how you slice it. There are certainly some seemingly major jumps, but these are in fact themselves fairly simple in terms of the complexity of the underlying genetics.

  8. Cambrian explosion, anyone? by Anonymous Coward · · Score: 1, Informative

    I don't see how this is news.

  9. It's not news, it's a PR piece. by TCQuad · · Score: 3, Interesting

    I suspect these fellows have some interesting new postulate, and the Pitt News just got it wrong.

    From the banner at the top of the site, the Pitt News is a student newspaper. Student newspapers quite often do little fluff pieces on professors in various departments.

  10. It doesn't change anything by krumms · · Score: 1

    Obviously when changes happen, they happen rapidly via mutations. However, over time all these mutations "add up" so to speak, so Darwinism as we know it is still very much at work.

    I highly doubt that one day we were born from a monkey with exactly the same mutations that are present in us all today - over time things just worked out this way.

    Perhaps someone who isn't still drunk from last night can better explain where I'm coming from? :)

    1. Re:It doesn't change anything by arminw · · Score: 1

      ......Perhaps someone who isn't still drunk from last night can better explain where I'm coming from.....

      There are basically two choices, but both are BELIEFS you can choose from.

      One is: The path of your origins is "out of the goo by way of the zoo to you".

      The other is: Your ancestors were put here by a transcendent Creator God who has a purpose for your existence.

      Neither of the above can be "proved", but you may believe one or the other. Many, if not most people still believe the latter is more satisfying.

      --
      All theory is gray
    2. Re:It doesn't change anything by Dimensio · · Score: 1

      There are basically two choices, but both are BELIEFS you can choose from.

      False dichotomy. Also misrepresents the status of evolution, which is well-supported by a mountain of evidence.

      One is: The path of your origins is "out of the goo by way of the zoo to you".

      Hopelessly oversimplified statement of the theory of evolution.

      The other is: Your ancestors were put here by a transcendent Creator God who has a purpose for your existence.

      Why is this mutually exclusive with evolution? Why is this the only other possibility?

      Neither of the above can be "proved", but you may believe one or the other. Many, if not most people still believe the latter is more satisfying.

      Argument from wishful thinking. What people find "satisfying" to believe has no bearing whatsoever on reality.

    3. Re:It doesn't change anything by plunge · · Score: 1

      "Neither of the above can be "proved", but you may believe one or the other. "

      Common descent is proven, sorry. If you are not an ape, descended from other apes, then what are ape molars doing in your mouth? How come you have exactly the same number of hair folicles as an ape? Why do you have the same sort of rotational shoulder that is unique to apes? And so on. You can't escape placing humanity, as well as every other creature, into a single tree of descent. The evidence converges from so many different lines of independent proof that it's simply unavoidable.

    4. Re:It doesn't change anything by arminw · · Score: 1

      ....If you are not an ape, descended from other apes, then what are ape molars doing in your mouth?....

      Yes and my Honda descended from a Ford some time ago. If you are a car, how come you have four wheels, steering mechanism and some kind of engine etc? Common characteristics in no way proves descent. If any thing this tends to show that whoever DESIGNED the ape used some similar components for you and me to accomplish the task of chewing food. Human designers do that all the time -- re-use operational components for similar purposes.

      --
      All theory is gray
    5. Re:It doesn't change anything by plunge · · Score: 1

      It's interesting that you brought up the example of cars, because of course cars do not and cannot be made to fit into a tree of descent with modification like living things. With cars, features and traits can spread across lineages without any regard to time and space connections being necessary between models. That's the sort of thing that designers do. And that's completely absent, in every regard, from biological life.

      In biological life, we end up with patterns that are necessarily linked in both time and space, with groups of traits that radiate and descend forwards in time, never laterally (like what happens all the time with designed cars).

      "If any thing this tends to show that whoever DESIGNED the ape used some similar components for you and me to accomplish the task of chewing food."

      Since if the parts were different, you'd just say that the designer was being creative, this sentance is nothing more than ad hoc. It doesn't show anything, because it risks nothing.

      On the other hand, if an ape like a human being had feathers: something that it would be child's play for a designer to do, then evolution would clearly be proven false. And yet we never see anything like that happening.

      "Human designers do that all the time -- re-use operational components for similar purposes."

      Really. They just happened to pick the exact same number of hair follicles for you as they did when they "designed" an ape. They happened to pick the exact same particularlistic shape of of molar: a type of molar that arose only once, and only appears in creatures after it first arose in apes, and then only in apes. And they, in fact, made humans simply by slightly modifying the traits of a basal ape... but never in any way that would make any description that sets apes apart from all other monkeys and primates and mammals not then also apply to human beings. And of course, this designer arranged all of this not just so that there would be a morphological tree of features, but so that the genetic code, even the non-coding parts, would demonstrate exactly the same line of descent in exactly the same way that paternity tests can tell you who you are related to.

      Riiiiight.

    6. Re:It doesn't change anything by arminw · · Score: 1

      ....They just happened to pick the exact same number of hair follicles....

      Living things are much more diverse than manmade devices, but nevertheless have many common design features. The underlying chemistry of life with its DNA codes is a tried and true design, just as 4 wheels are in an automobile. The very nature of bio-identification, such as fingerprints, iris scans and the blood vessels in the palm of your hands depend on the uniqueness of each individual. The structure of hemoglobin is similar in all mammals. Physiologically, you (and I) are much more similar in many ways to a pig than any ape. Similarities of design in no way proves descent. Living things are both similar in many ways, yet all individually different.

      My main contention is that true science requires EXPERIMENTATION to prove a theory. Before experimental science was born, philosophers had all sorts of theories about the world we live in. Most of them were disproved by experiments, often at great cost, to the early brave souls who went against the prevailing wisdom.

      What other widely held theories of science are there, besides evolution and ID and other origin conjectures are there, that do not have even ONE experiment to prove their main assertions? A theory that cannot be ultimately be proved in the laboratory is only a belief system. I happen to BELIEVE in a transcendent Creator God as the originator of all things. You happen to believe something else. However, unlike REAL science, neither your belief concerning origins nor mine has been proved true or false by countless experiments, such as is the case in true science. Therefore, both your and my beliefs should be discussed in a philosophy or religion class, but not as science.

      Combine the elements of two kinds of living creatures to form a third, previously unknown kind according to your theory and then come back when you have the result. I'm sure you'd win the Nobel Prize and be very rich and famous.

      --
      All theory is gray
    7. Re:It doesn't change anything by plunge · · Score: 1

      "Living things are much more diverse than manmade devices, but nevertheless have many common design features."

      Common design features are not at all demanded by design (since design demands nothing in particular at all: that's why it's useless as an explanation), but they are absolutely demanded by common descent. And not just similarities: a very very specific pattern of similarities.

      "The underlying chemistry of life with its DNA codes is a tried and true design, just as 4 wheels are in an automobile."

      The problem is that the underlying genetics goes even farther than that. The similarities in life can be grouped into relations that extend beyond even the functional parts: even the non-coding areas bear distinct features that can be grouped into a family tree that in turn makes sense as a timeline and is confirmed by every different way of looking at it. There is nothing necessary about having the exact same number of hair follicles as apes, nor is there something special about the exact design of our molars. But if evolution is true, then these sorts of similarities are absolutely required. They HAVE to fit all the rest of the evidence in the same way that everything says they should.

      One of the most interesting are atavisms. These are when supressed aspects of your ancestor's genetic code accidentaly get expressed. The result is humans with tails, whales with legs, and so on: all betraying their past ancestry.

      "The very nature of bio-identification, such as fingerprints, iris scans and the blood vessels in the palm of your hands depend on the uniqueness of each individual."

      Yes. Though, of course, fingerprints are a fairly recent development in the history of life. It's also a key requirement of evolution via natural selection that there be a wide range of variation to choose from. And as you have conceded, there is.

      "The structure of hemoglobin is similar in all mammals."

      Indeed it is. But it's also slightly different across mammals. And the differences all fit into a specific pattern of relation via modification. The mammals who are most distantly related to us, as shown by fossil records, happen to have hemoglobin sequences which are less like ours than any other mammals. And so on. All mammals can be fit into a family tree that when arranged in the way that the genes and fossils suggest, show clear lines of descent with modification along the way.

      "Physiologically, you (and I) are much more similar in many ways to a pig than any ape."

      I'm afraid that is flat out false. You may have been confused by the fact that we use pigs for human-hybrid experiments. But this is because pigs are much cheaper and easier to keep, and they breed faster, and so on, than apes. There is only one major NEW morphological feature that humans have that othre apes don't: the indentation at the roof of your mouth, allowing you to make sophisticated sounds of language that other apes cannot.

      "Similarities of design in no way proves descent. Living things are both similar in many ways, yet all individually different."

      And it is the _specific_ patterns of similarities and differences that demonstrate common descent. Just as you are genetically most like your parents, and less so your grandparents, so are humans genetically most like chimps, and less so gibbons. Lo and behold, this is the exact pattern and timeline that the fossil record shows. The genetic record matches the fossil record (which would be totally inconcievably by mere chance) and both match all other observed facts about the history of life on earth.

      "My main contention is that true science requires EXPERIMENTATION to prove a theory. Before experimental science was born, philosophers had all sorts of theories about the world we live in. Most of them were disproved by experiments, often at great cost, to the early brave souls who went against the prevailing wisdom."

      Indeed. And evolutionary science is chock full of experimentation. Why were you under the impr

    8. Re:It doesn't change anything by Dimensio · · Score: 1

      Yes and my Honda descended from a Ford some time ago.

      Why do so many creationists think that this is a valid analogy? Are they all really so stupid as to believe it an apt analogy, or do they just turn their brains off when it comes to scientific fields that they don't want to understand for fear of shattering their fragile faith?

      Hondas and Fords are not imperfect self-replicators. Comparing automobiles to living organisms as a means of disputing evolution is not a valid analogy.

    9. Re:It doesn't change anything by arminw · · Score: 1

      .....What science requires is that we be able to TEST any claim made.....

      One of, if not THE central claim of evolution is that the more complex life-forms evolved from the simpler ones. Taking two creatures from the same grouping of complexity and making a hybrid of similar complexity does NOT prove that central tenet. A donkey and a horse are both about equally complex and I suspect so are the dolphin and the killer whale example. Evolutionists claim for example, that birds evolved from reptiles. A valid experimental proof of this idea would be to make some kind of bird from two reptiles. That however is admittedly too complex for our present knowledge of biology.

      A simpler experiment with two very different single celled creatures would certainly also prove the possibility of making a more complex creature from one or more simple ones. Even taking a relatively small collection of the same type of cells, say amoebas and fashioning a new self reproducing organism from them would certainly prove that this claim of evolution is a fact. The claim that the complex arises from the simple has never been tested by experiment.

      Scientists have been experimenting with millions of generations of fruit flies, subjecting them to all sorts of mutation inducing factors and other genetic manipulations. They have succeeded in making some rather grotesque fruit flies this way, but they are still, all without a single exception, fruit flies.

      Even IF such experiments succeeded in demonstrating that evolution from the simple to the complex is a proven fact, it would still leave open how this experiment was done by "nature" without the same sort of intelligent input and arrangements of the conditions under which the experiment was done.

      Why should common factors of design in biological systems prove ancestry any more than it does in human designed systems. If you posit that the Wright brother's flyer is the ancestor of a 747 jet, I suppose you could be granted that liberty and apply it also to biology. I'm not sure that is what you mean by ancestry in the case of biology.

      My contention is of course that all the complexity we see in biological systems was carefully and deliberately designed, but that premise, just like the evolutionary one cannot be tested by experiments we can do or at least have done until now. That is why evolution, creationism, ID and other theories of origins are not true science, as say physics, geology, cosmology, biology and other "hard" sciences where the fundamental theories involved can be repeatedly tested experimentally.

      --
      All theory is gray
    10. Re:It doesn't change anything by arminw · · Score: 1

      ......as a means of disputing evolution .....

      I am not trying to dispute evolution per se, nor any of the other theories of origins, especially of life. My point is that none of the theories of origins has been proved by repeatable experiments, such as is done in other hard sciences. True scientific theories eventually require experiments to prove or disprove their validity. Evolution from simple to complex life forms has never been demonstrated in the lab. The designer put forth by the ID camp has not been put in a test tube either.

      --
      All theory is gray
    11. Re:It doesn't change anything by plunge · · Score: 1

      "One of, if not THE central claim of evolution is that the more complex life-forms evolved from the simpler ones."

      Indeed.

      "Taking two creatures from the same grouping of complexity and making a hybrid of similar complexity does NOT prove that central tenet."

      It proves a key component of the idea: that as species diverge from each other genetically and morphologicaly, they become less and less genetically similar and less and less genetically compatible. If evolution is true, then we should be able to find species that have diverged from a common ancestor, but can still hybridize. And we can. The underlying genetics are, in fact, not even really a mystery. We can see how lines diverge and steadily become too different to be compatible. Human and chimpanzee genomes, for instance, are different ona gross scale mostly only in that one of our chromosomes is version that is fused together from two of what they have. The tell-tale telomere ends are even sitting in the middle of that chromosome, evidence of the past.

      "A donkey and a horse are both about equally complex and I suspect so are the dolphin and the killer whale example."

      This idea of "equally complex" doesn't actually mean anything. All these different species have different genomes.

      "Evolutionists claim for example, that birds evolved from reptiles. A valid experimental proof of this idea would be to make some kind of bird from two reptiles."

      No, you are still confused as to what we are experimenting ON. We do experiments on the evidence to see if it shows what it seems to: that birds indeed are historically offshoots of the dinosaurs. If that is true, then we should be able to find fossils that hve features unique to dinosaurs and modern birds. And that's exactly what we found. And this theory is constantly confirmed whenever we turn up new evidence. For instance, when we finally found a remnant of a T-rex with high enough quality to see something about tissue types, we found that T-rexes have a tissue type in their bones that currently only modern birds have.

      Asking for science to "reproduce" the entire ancestry of dinosaurs to birds is insane. It took trillions of individuals (along with countless species) across the entire globe over millions of years for that to happen. What scientists look for is evidence of this process having happened: if birds evolved from dinosaurs via reproduction there are all sorts of things which MUST be found in the physical evidence if it is true.

      We no more need to reproduce the entire history of all life in the lab than we need to reproduce Thomas Jefferson sleeping with Sally Hemmings to demonstrate that it happened. The evidence of his change is found in the physical evidence that tells that a history, including the record left in genomes. The experiments are done on that evidence, and to produce and discover that evidence as well as to work out what the mechanism was.

      "A simpler experiment with two very different single celled creatures would certainly also prove the possibility of making a more complex creature from one or more simple ones."

      Single-celled creatures, FYI, generally do not reproduce sexually. They evolve directly, via mutation.

      In this respect, we've seen bacteria evolve entirely new metabolic pathways in the lab and all sorts of things that most certainly are increases in functional complexity.

      "Even taking a relatively small collection of the same type of cells, say amoebas and fashioning a new self reproducing organism from them would certainly prove that this claim of evolution is a fact. The claim that the complex arises from the simple has never been tested by experiment."

      Not only has evolution been shown, in a lab, to increase complexity and add new features, but we have a rich history of evidence that it has done so in the case of all life on earth.

      You should also probably be aware that evolution happens to large populations over time, not individuals. It isn't a matter of two creatu

    12. Re:It doesn't change anything by Dimensio · · Score: 1

      I am not trying to dispute evolution per se,

      No, you're just trying to fundamentally misrepresent science so that you can claim that evolution is not science. Your incredibly lame automobile analogy is a demonstration of just how desperately you are reaching.

      My point is that none of the theories of origins has been proved by repeatable experiments,

      NO THEORY IN SCIENCE IS EVER PROVEN! Theories CANNOT be proven. Theories are ALWAYS tentatitve, they are ALWAYS subject to change should contrary information arise.

      . True scientific theories eventually require experiments to prove or disprove their validity.

      No, true scientific theories are required to make predictions that can establish confidence in their validity or demonstrate their falsehood. They cannot be "proven". Evolution has made numerous fulfilled predictions that have established further confidence in the theory. Thus far no observations that contradict the theory have been observed, even though there has been ample opportunity for such observations to arise in biological and palaentological study.

      Evolution from simple to complex life forms has never been demonstrated in the lab.

      And you don't have to demonstrate this. Demonstrating this "in the lab" wouldn't "prove" that such an event occured millions or billions of years ago anyway. All you need to do is establish that such a process would leave currently observable traces in evidence today, then find such evidence.

      You are sorely mistaken about how science operates. Not every theorized process needs to be completely and fully duplicated in a lab for scientists to have confidence in the process.

    13. Re:It doesn't change anything by arminw · · Score: 1

      ......your nonsensical demand that _historical events_ be reproduced in the lab.....

      I've never said historical events need be shown experimentally. What must be shown is that fundamental claims of any theory must be proven by experiment.

      Geology is a hard science, the claims of which can be shown by repeatable experiments. Wave action, erosion, layering of sediments and many other geologic theories all have been experimentally proven. We can see geology in action in the volcanoes of Hawaii and other places and measure the reflection and refraction of seismic waves throughout the interior of our planet.

      The movement from the very simple to complex is contrary to the laws of entropy (second law of thermodynamics) and evolution has never demonstrated how its claims get around this. The fruit fly (drosophila) experiments have not shown any increase, but often a decrease in viability and functionality of these creatures. What is labeled species is not always a genetic or complexity border. The whole progression from "simple" single celled creatures to the complex biological organization of humans and the incredibly complex biochemical systems is a conjecture, NO step of which has ever been duplicated by experiment. If anyone would have succeeded in creating a complex creature, say like a hydra from a collection of cells, that would have been big news that evolutionists would endlessly trumpet and it would of course prove the central tenet of the evolution theory. Evolution preaches that incredible things have occurred over eons of time, yet nobody has ever duplicated even the simplest transformations and increases of complexity by all the best efforts of the evolutionary believers.

      It doesn't really matter how creatures reproduce, sexually or by simple division. Make a totally new kind of bacteria, yeast, fungus, --anything -- out of what exists already. I don't have to know in detail all the nuances of evolutionary dogma, but drosophila experiments have not produced any new, kinds of insects of greater or equal complexity. They are still what they always were, even if you apply a new "species" label to them. Their essential characteristics have remained unchanged, not matter what attempts have been made to come up with a new, never been here before creature. There are many distinct kinds of flies, mosquitoes, fleas, ants, many kinds of rodents, reptiles, birds, but they are and have always been as part of uncross-able groupings, no matter what label might be applied to any particular group.

      Breeding and adaptation experiments do not prove the progression from simple to complex. Is a Dachshund more or less complex than a Poodle? Is a lighter moth more complex than a darker one or a antibiotic resistant bacteria more complex?

      There is lots of lateral transfer of information within nature and from nature to human designs. The optical and auditory structures, hemoglobin, nerve cells and so forth, all show consistent practical design across diverse groups, all based on the underlying laws of physics and chemistry. The lift of the wings of a 747 is occasioned by the same aerodynamic principles that kept the Wright brother's plane in the air and is also used by countless flying creatures. The sonar echolocation systems used by submarines works by the same principles that the designer of dolphins and bats invented long before. Cameras have the same basic structure and major components that human and other mammalian eyes have. These thing show, although not conclusively prove by experiment, that a common design is more likely than the random happenstance of evolution.

      --
      All theory is gray
    14. Re:It doesn't change anything by arminw · · Score: 1

      .....Demonstrating this "in the lab" wouldn't "prove" that such an event occured millions or billions of years ago anyway.....

      No it wouldn't it prove it occurred whenever, but it would prove that it is possible at all. There is no need to prove or disprove all of the evolutionary theory, only the allegation that simple things become more complex as time goes on. Just do ONE experiment to demonstrate that this is in fact true.

      (.....Thus far no observations that contradict the theory have been observed.....)

      The well established laws of entropy totally contradict evolution's central dogma -- namely the progression from the simple toward the complex. Complex systems break down into simpler pieces, but nothing simple ever becomes more complex without the input of energy and INFORMATION.

      (....true scientific theories are required to make predictions....)
            Evolution has so far failed in its central prediction that complex systems arise from simple ones. It is therefore an invalid theory in its very foundation.

      (.....Theories CANNOT be proven....)

      Sure they can and are being proven all the time. All our modern technology rests on what were once untested theories. The computer you are reading this on proves many of these. The fundamental laws by which it operates were once untested, unproven theories. Countless experiments were done and refined until we learned how electricity works. So far at least, the laws of electricity appear pretty solid.

      --
      All theory is gray
    15. Re:It doesn't change anything by Dimensio · · Score: 1

      The well established laws of entropy totally contradict evolution's central dogma -- namely the progression from the simple toward the complex. Complex systems break down into simpler pieces, but nothing simple ever becomes more complex without the input of energy and INFORMATION.

      Please cite the "laws of entropy" that state a requirement of "INFORMATION". Make sure you cite your sources.

      Sure they can and are being proven all the time

      Name a theory that has been proven and cite the proof thereof.

    16. Re:It doesn't change anything by arminw · · Score: 1

      .....Name a theory that has been proven and cite the proof thereof....

      I'll tell you of two. The theory of the interrelationships of magnetism and electricity ( discovered by Michael Faraday) is proven by the fact that you have power to run the computer you are reading this on.

      The theory of atomic fission is proven by visiting your friendly neighborhood nuclear power station. If you don't have one of these nearby, google for Hiroshima or Nagasaki and look at a few photographs of what took place there in 1945.

      (.....Please cite the "laws of entropy" that state a requirement of "INFORMATION"......)

      Increased entropy means decreased order and I'll give you two examples you may understand. If (when :)! your house gets messy you not only have to supply energy to move the randomly scattered socks, papers, used coffee cups and other things around, but you must also supply information to put them in their proper places. Supplying energy alone is not sufficient to reduce the entropy of the messy house. Judicious dusting and vacuuming will also reduce fine particle entropy.

      If you have a loose collection of say airplane parts which you wish to turn into a functional plane, you not only have to supply the needed energy to move the parts around, but even more importantly, you'd have to supply information on exactly where each part is supposed to fit.

      Living systems constantly reduce entropy by the use of energy directed by the information codes stored within their DNA.

      --
      All theory is gray
  11. I liked this theory bettery... by rdwald · · Score: 3, Informative

    ...when Gould came up with it 20 years ago.

    Seriously, is the author of TFA a moron or what? Punctuated Equilibria is not the same as "Science is wrong!!!11one"

  12. So.....That's Still Evolution by Anonymous Coward · · Score: 0

    they're just challenging the claim that it can happen gradually over time in some cases?

  13. this poor researcher by mrpeebles · · Score: 3, Interesting

    Can you imagine how this poor guy must feel? You try to publish some paper (I don't know how important it is), the popular press picks up on it and headlines it with "Professor challenges evolution." I for one know that if this happened to a friend of mine, I would tease them about it for YEARS.

    1. Re:this poor researcher by JohnFluxx · · Score: 1

      Actually as others have pointed, it's the professors fault, and (afaics) we should be feeling sorry for the student who wrote the paper.

      "Darwinism's presence in science is so overwhelming," Schwartz said. "For the longest time, there was no room for alternative thinking among the scientific community."
          -- the prof who published the paper

  14. Poppycock by the+eric+conspiracy · · Score: 4, Insightful

    The concept that the idea of rapid change is a revolutionary attack on Darwinism is poppycock.

    Darwin's thesis is in two parts - that evolution occurs, and that the mechanism is natural selection. The first part is not under any scientific debate. The second part, the proposal that natural selection is the mechanism has been understood to be not the best mechanism for the process of evolution has been understood for nearly 100 years. Darwin did not understand genes, genetics, nor the mechanisms of genetic drift that occur within populations. This knowedge postdates Darwin's original work.

    The understanding of evolutionary mechanism works at the level of genes, and populations whereas Darwinism was concerned mainly with species.

    This view of the mechanism of evolution is widely misunderstood in the creationistic and anti-evolution communities, and ignorant articles often appear trying to discredit evolution based on a fundamental misappropriation of the topic.

    It's a shame that this sort of article was published on Slashdot - it shows a great ignorance of the topic.

    1. Re:Poppycock by MarkusQ · · Score: 0

      The second part, the proposal that natural selection is the mechanism has been understood to be not the best mechanism for the process of evolution has been understood for nearly 100 years.

      Understood by whom? And, more to the point, what alternative do they supposedly posit as a replacement?

      Darwin did not understand genes, genetics, nor the mechanisms of genetic drift that occur within populations. This knowedge postdates Darwin's original work.

      He didn't need to. An understanding of genes and genetics is no more important to understanding natural selection than it is to understanding artificial selection (which, you may note, was successfully practiced for eons before Mendel or Watson and Crick).

      And genetic drift, while it may or may not be a significant factor in the way species change over time, it is not (and demonstrably can not be) a significant factor in how they evolve. Remember, the power of evolution isn't that it explains change in general but that it explains apparently purposeful change without needing to use a ghost in the machine somewhere. If you plan to use random drift for that, you'll have a heck of a time explaining why things consistently "randomly drift" in the right direction. The correct explanation (and totally in keeping with Darwin's work) is that they don't consistently drift in the right direction, but that every branch who's genes drift in the wrong direction dies out (by the definition of "the wrong direction") and thus we don't see them and feel the need to explain them. This process is, of course, called "natural selection".

      --MarkusQ

    2. Re:Poppycock by the+eric+conspiracy · · Score: 1

      Understood by whom? And, more to the point, what alternative do they supposedly posit as a replacement?

      http://www.the-scientist.com/2003/11/17/14/1/

      If you plan to use random drift for that, you'll have a heck of a time explaining why things consistently "randomly drift" in the right direction.

      That is challenged quite widely. Natural selection is one mechanism for speciation, others like random genetic drift in isolated populations are often viewed to be more important in modern theory.

  15. Nothing to see here, folks by Cujo · · Score: 1

    Yes, it's just punctuated equilibrium, and it's been discussed quite a lot for many years and really doesn't contradict Darwinism at all. No one is suggesting that evolution happens via "saltation" - when genomes makea radical shifts in one generation. Large random changes in a genome are just about guaranteed to be nonviable. The only thing that is even apparently controversial (it really isn't) is whether the rate of change is hihgly variable or not.

    Dawrwinism proposes that such powerful evolutionary forces as predator/prey arms races and sexual selection will be episodic - they move along quickly until something close to a state of stability is reached - the rabbit is a little faster than the fox, but not so miuch that the fox can't survive.

    --

    Helium balloons want to be free.

    1. Re:Nothing to see here, folks by NoMoreNicksLeft · · Score: 1

      Some people actually do suggest that radical changes can and do occur across a single generation, even before the classic feedback mechanisms would come into play. Sometimes I wonder if they're not onto something.

  16. Why is it one or the other by Swisssushi · · Score: 3, Interesting

    As with so many arguments in society and science, people almost always need to choose one side or the other. In the evolutionary theory debates, the battle between the gradual change camp and the punctuated equilibrium camp has been going on for a long long time. As an antro major, we discussed both ideas in class, but really never talked about "what if it's both". The idea that change is always gradual has its merits in that biology is always trying little experiments in adaptation (e.g. mutations). Most don't work, but some get to hang around and eventually get expressed rather regularly in a population. Then, under a specific stressor, those organisms with that trait suddenly have an advantage over their brethren. The ones without this nifty trait die off leaving the ones with the trait. This gets seen as a sudden adaptation in the fossil record, even though the development of the trait was gradual. In general, biology doesn't work fast enough to respond to rapid environmental stressors. Biology of different organisms work along the same time lines as the organism's reproductive cycles. Bacteria can change more quickly than apes because bacteria reproduce much more quickly, but relative to the organisms themselves, the changes are slow.

    --
    Swisssushi - When the going gets tough, get some tenderizer
    1. Re:Why is it one or the other by Bowling+Moses · · Score: 1

      "In the evolutionary theory debates, the battle between the gradual change camp and the punctuated equilibrium camp has been going on for a long long time. As an antro major, we discussed both ideas in class, but really never talked about 'what if it's both'."

      Gould and Eldredge explicitly stated that punctuated equilibrium and gradualism are not mutually exclusive. It's actually a little bit funnier than that. When Gould and Eldredge came out with punctuated equilibrium, those that they pegged as gradualists felt like they had been caricatured as slavishly holding to uniformitarianism and disallowing any role to great environmental change. Punk Eek is however a great way of describing things. Read more about it at talk.origins.

    2. Re:Why is it one or the other by dustmite · · Score: 1

      Bacteria can change more quickly than apes because bacteria reproduce much more quickly, but relative to the organisms themselves, the changes are slow.

      Just a technicality, that's not the full picture: An additional reason bacteria can change more quickly than cellular organisms is that they can actually absorb and exchange genes directly. Thus even a single bacterium can within its own lifetime "evolve" quite dramatically, in a way that has no parallel in complex life forms like apes ... it's a totally different method, not just "relative (because they're smaller)".

    3. Re:Why is it one or the other by plunge · · Score: 1

      Well, and more conventionally, bacteria don't have the same sorts of repair mechanisms to stop errors.

    4. Re:Why is it one or the other by dustmite · · Score: 1

      True, indeed. (Although they do at least partially 'make up for it in numbers')

  17. I RTFA... by Spy+der+Mann · · Score: 2, Interesting

    This theory states that on radical environment conditions, some naturally-produced "mutation inhibitors" are reduced, creating mutations in large populations. These mutations are invisible, i.e. in the form of recessive genes, until two individuals with the same gene have an offspring.

    Of course, nothing guarantees that the offspring won't be a horrible mutant and die because of an "unknown disease".

    1. Re:I RTFA... by usrusr · · Score: 2, Interesting

      while this is interesting, don't we, as double-helix driven beings, have a lot of dormant genes that are only triggered by extreme environmental conditions?

      these things could mutate over hundreds of generations without ever harming individual fitness and then suddenly get triggered, exposing a shitload of mutations at once, spread in different variations over the whole population.

      Those new findings would only strengthen an already strong mechanism.

      --
      [i have an opinion and i am not afraid to use it]
  18. ID will miss the lesson by MuNansen · · Score: 3, Insightful

    What's funny is that this article is a great example of how evolution isn't a dogma. The scientific community is constantly seeking to improve or amend it. Insteal the ID'ers (funny how close that is to "idolaters") will just use the headline "Scientists disprove Evolution."

    1. Re:ID will miss the lesson by Dimensio · · Score: 1

      Insteal the ID'ers (funny how close that is to "idolaters") will just use the headline "Scientists disprove Evolution."

      Indeed, I've seen creationists making this exact claim on conservative discussion forums. One creationist even said that he was going to add Professor Schwartz to a list that he was compiling of scientists who agree that evolution is "religious dogma" (this stemmed from a previous discussion where he claimed that "thousands" of scientists would agree to such a statement but absolutely refused to support it). The fact that Schwartz seems to accept that evolution has occured didn't seem to matter.

      Creationists are by and large liars who willfully remain ignorant.

  19. Actual article by Schwartz and Maresca by Bowling+Moses · · Score: 4, Informative

    The actual article is available from The Anatomical Record Part B: The New Anatomist" volume 289B, Issue 1 , Pages 38 - 46. The abstract's free, although the article itself may require a subscription or university account. The flareup seems to be with this sentence in the abstract (I haven't read more yet): "In evolutionary terms, extreme spikes in environmental stress make possible the emergence of new genetic and consequent developmental and epigenetic networks, and thus also the emergence of potentially new morphological traits, without invoking geographic or other isolating mechanisms." In other words, a change in the environment puts organisms under extreme stress, overloading the ability of various DNA repair mechanisms to counteract DNA damage and mutation, occasionally resulting in novel, beneficial mutations. Several other posters have already said this really isn't anything new, for instance it's known that some bacteria actively mutate their DNA in response to extreme environmental stress. The author (Schwartz) may be hyping his claims some, but really it looks like a case of the reporter going gonzo, and might be a creationist yahoo to boot.

    1. Re:Actual article by Schwartz and Maresca by arminw · · Score: 1

      ......for instance it's known that some bacteria actively mutate their DNA in response to extreme environmental stress....

      Even when they do, they are basically still the same bacteria. An e-coli or coccus may adapt to stress, but they still remain one or the other even though both have adapted to survive. No distinct new type of bacteria is created that might have some of the best traits of either.

      --
      All theory is gray
    2. Re:Actual article by Schwartz and Maresca by plunge · · Score: 1

      Read the quotes from the guy. It looks like he's the one going gonzo: all these quotes about "dogmatism" and "I've disproved Darwin bwahahaha!"

      At best, what he describes is one of MANY known engines of variation in genomes. The idea that discovering a mechanism of increased variation is a challenge to the idea of natural selection is utterly absurd. This really sounds like the case of a US crackpot who is hyping beyond recognition the otherwise perfectly mainstream work of an Italian scientist.

    3. Re:Actual article by Schwartz and Maresca by Bowling+Moses · · Score: 1

      The tone set by the reporter just made me discount all the quotes, nevermind how idiotic they were. Ever since I was interviewed back in college and my statements butchered I've put little stock in reporter's ability or desire to accurately portray their source, and other events have only reaffirmed this. However, I've now skimmed the article and the reporter didn't do most of the hype. It's a theoretical paper of sorts, but seems more like a review for a wide audience or even the general public, and seems out of place in the journal. The article also made me doubt Schwartz's understanding of evolution, presents no new data, no experiments, no applicable mathematical modeling, no anything, which makes the "Darwin refuted" claim pathetic.

    4. Re:Actual article by Schwartz and Maresca by Bowling+Moses · · Score: 1

      One would never expect an E. coli to transmute into a Mycobacterium all in one go, that's just not how evolution works. A single environmental change would most likely alter the prevalance of a few genes in a bacterial population, and might also cause an influx of mutations. Speciation is a known event in bacteria, and we are able to construct phylogenies of bacteria showing how they are interrelated and providing insight as to how species may have arisen, especially since the genomes of multiple bacterial species have been sequenced and more are on the way. The ability of bacteria to adapt to their environment, genetic alterations up to and including speciation (although "species" in bacteria is wonderfully squishy), is particularily important in understanding host:pathogen interactions, for example. There a genetic modification might result in a bacteria infecting new species, or unleash a pandemic, which is great from V. cholera's point of view but sucks for us. The study of host:pathogen interactions is really a study of an evolutionary arms race going back several hundred million years--it looks so cool I'm trying find a postdoc position in that area.

    5. Re:Actual article by Schwartz and Maresca by arminw · · Score: 1

      .....providing insight as to how species may have arisen....

      The operative phrase "may have arises" is precisely where the problem lies. We don't KNOW how it happened and know one has ever MADE it happen to prove the conjecture. There is no reason why such an experiment to demonstrate how to to transmute into a E. coli to into a Mycobacterium has to be done in one step. Do it in as many steps as you can think of, one at a time. Just follow in the lab the same procedures you think evolution took and duplicate that. Using the time excuse doesn't work, since you are doing a directed, carefully planned series of experiments with many generations of bacteria. Evolutions was supposedly done by processes other than the application of intelligence.

      One of, if not THE central claim of evolution is that the more complex life-forms evolved from the simpler ones. Experimentally prove how a simpler creature or set of creatures can be made into a totally new, more complex one. Scientists have been experimenting with millions of generations of fruit flies, subjecting them to all sorts of mutation inducing factors and other genetic manipulations. They have succeeded in making some rather grotesque fruit flies this way, but they are still, all without a single exception, fruit flies.

      There are certain genetic boundaries that have never been crossed. What has been called species is not necessarily such a grouping boundary.

      Living things are very adaptable and in that sense, "survival of the fittest" is certainly valid. However, the urge to survive by adapting to stress in no way proves the claim of evolution from the simple to the complex.

      --
      All theory is gray
    6. Re:Actual article by Schwartz and Maresca by Bowling+Moses · · Score: 1

      Members of the jury, you cannot convict my client of murder. Not one of you was there to witness the alleged event, and the prosecution has perversely refused to revive Mr. Body and restore him and my client to conditions identical to those of the day in question, and reproduce the alleged murder for the benefit of your observation. Sure there are eye witness accounts, but those are notoriously unreliable. The video of my client allegedly murdering Mr. Body could have been fabricated. My client's blood that was found on the scene of the crime could have been planted there, and my client's torn and bloody clothing with Mr. Body's blood on it could similarly been part of an elaborate frame-up. Ditto for the knife with my client's fingerprints. My client's violent tendencies and record of death threats to Mr. Body are mere circumstantial evidence. The fact of the matter is that until the prosecution invents a time machine to take us back to the day of the murder so we can see these alleged events unfold ourselves, it cannot be said without a doubt that my client murdered that man.

      What you wouldn't demand of that prosecutor is what you're demanding evolutionary biology to do. Actually, it's even worse: E. coli is not the progenitor of the Mycobacterium genus or vice versa--they share a common ancestor that existed many millions of years ago. Even if we knew the precise DNA sequence of this organism, it would be impossible to replicate the exact series of events that resulted in E. coli and Mycobacteria. To do that, we would not only need the exact morphological and genetic makeup of the progenitor bacteria, we also have to know all the details of that population's environment, exact selective pressures, genetic drift, random mutations and their exact order of all of these events, what other bacteria were present for any horizontal gene transfer, etc. We don't have a time machine. It is impossible to do what you're demanding without knowing these details. So the phrase "may have arisen" is not a problem at all--it represents our present state of knowledge based on the evidence from the known characteristics of bacteria and how they are interrelated and our understanding of evolutionionary mechanisms. What we can do is test different parts of evolutionary theory on specific systems, and Pubmed lists thousands of papers dealing with such.

      Regarding the rest of your post, well, there's some mistaken assumptions about what evolution is. First off, populations evolve, not individuals, and saying a population has an urge to evolve is a little peculiar. Second, evolution is not a ladder with bacteria on the bottom and us on top. Evolution's more like a bush, with modern species at the tips of the branches. We've observed speciation happening in the wild and in the lab, including multiple fruit fly speciations. We also would never expect the result of fruit fly speciation to be anything other than something similar. Dogs giving birth to kittens is a creationist strawman--if you want to call that your "genetic barrier" be my guest. We've only just recently begun to have insight as to how different or more complex body plans may have arisen. Our limited understanding of how this occurs of course in no way invalidates that evolution occured--we have ample evidence from the fossil record and other sources. We are also beginning to understand the genetic and biochemical mechanisms responsible for body plan, such as some insight as to how an organism develops radial or bilateral symmetry, or none at all, how segmentation occurs, how limbs form during development. Now is a very exciting time to be a biologist!

    7. Re:Actual article by Schwartz and Maresca by arminw · · Score: 1

      ...... We don't have a time machine......

      In other sciences we don't have perfect knowledge, yet the claims of physics, cosmology and chemistry can be tested reliably today. You don't need a time machine to determine if quantum theory is valid. Countless experiment prove, or in some instances disprove various theories in these "hard" sciences. In biology also, experiments can and are being done to learn the behavior of extremely complex systems. The central tenet of evolution is that the simple became more complex as time went on. This part of the theory is against the demonstrated reality of the second law of thermodynamics which says exactly the opposite. Complex systems break down into simpler components and all you have to look into the mirror to see that happening to you. To counteract entropy requires the input of energy, but also INFORMATION.

      A complex creature contains vastly more information than a simple one. Even a "simple cell" contains immense amounts of information that is passed to future generations. Nobody has ever done an experiment adding information to a simpler living thing and thereby made a more complex one.

      If I had the opportunity to choose a career today, I would choose biology, rather than electronics as I did. Even so, the similarity between complex living systems and complex manmade ones is amazing. If you find a watch on the beach, you can study how it works today, but you can learn nothing of its origin. Because you know watches are of human origin you also know it was designed. You can and should indeed enjoy the study the amazing intricacies of living systems without defending non-proven theories of how they came to be that way. Find out how things work TODAY and use your knowledge to help others and, if that is your goal, make some good money besides. Learn about the programming of the intricate DNA-RNA life codes and learn to write some new programs that may help alleviate human disease and suffering.

      Explore the mystery how the brain gives rise to this thing we call mind and consciousness. There is evidence that "mind" may not be limited to the organ of the brain. From electronics I know that no matter how intimately you know the chips and circuits of a computer, you learn NOTHING about the real characteristics thereof until you energize it and load in some software, which in itself is a pure product of mind -- that of the programmer. I suspect that ultimately this is true of humans also. Software per se isn't subject to the same physical laws that hardware is. The situation of our software, the mind may be similar. It is indeed exciting to be a biologist!

      --
      All theory is gray
    8. Re:Actual article by Schwartz and Maresca by Bowling+Moses · · Score: 1

      You know, I was mid-way through a nice, thoughtful post, when I realized holy crap! This guy actually thinks the second law of thermodynamics disproves evolution! I could point out why this is bogus myself or provide you with links, but what's the point? You obviously didn't bother to read the first link I posted and so probably won't bother reading a second. So instead I'll just leave with a challenge: read that link. You've nothing to lose but a little time.

    9. Re:Actual article by Schwartz and Maresca by arminw · · Score: 1

      .....This guy actually thinks the second law of thermodynamics disproves evolution!....

      I have never said that. The second law says that complex systems always break down into simpler parts and never the other way around. To counter entropy two conditions must be met. Both of these are met in living systems. First there must be a source of energy. The sun is that source for all life here on Earth. Second, there must be some information on how and where to apply this energy in order to achieve survival and reproduction. The information codes, similar to a computer storage device, are stored in the DNA molecules. The generation of information is an activity of mind

      Since evolution attempts to explain origins apart from the activity of mind, it is at a loss to determine where the tremendous amount of information inherent in highly ordered living systems comes from. It is like finding a computer with complex programs inside and not wishing to acknowledge the existence of programmers.

      (....However, whether microevolutionary theories are sufficient to account for macroevolutionary adaptations is a question that is left open.....)

      The article link you recommended (quote above) puts this quandary very succinctly. Evolutionists rightly observe a tremendous increase over time in the complexity of living creatures, but then cannot really explain nor experimentally show how this increase in complexity came about.

      Nobody denies that all human creative activity first arises in a human mind. All the complex gadgets we use today came to be by processes of thought in a human mind. Why then is it so unreasonable to theorize that the incredible amounts of information we observe in living things also first arose in a mind, one far greater than any human mind?

      If you find a watch on the beach, you can still be fascinated and educated by determining how it works, quite independently of whether or not you are willing to acknowledge the existence of a watchmaker.

      --
      All theory is gray
  20. Why attack Darwin? by csoto · · Score: 1

    I mean, what else are you going to develop for? OpenSolaris? I think NOT!

    --
    There exists no way of exchanging information without making judgments. --Bene Gesserit Axiom
  21. Timely by rabbitfood · · Score: 1

    And topical, too. I hadn't considered the nature of evolution for upwards of a week, and it is important to keep these things in the forefront of public consciousness. Even here in the UK, without constant scrutiny of the urgent details of the comparatively recent Darwinian theory of Evolution, buses wouldn't run, power plants would fall quiet and unprovoked creationists would pray peacefully.

  22. RTFA by LightningBolt! · · Score: 3, Funny

    Their not repudiating Evolution! They're simply saying that it runs faster on "Schwartz and Maresca" than it does on Darwin. Although the article doesn't say it, I'm pretty sure "Schartz and Maresca" is a Linux distro, a.k.a. "S&M Linux".

    --
    Old people fall. Young people spring. Rich people summer and winter.
    1. Re:RTFA by LightningBolt! · · Score: 1

      Did I just say "their" instead of "they're"?! Wow, talk about the slashdot effect: the bad grammer of slashdot is effecting me. Oh no, I meant "grammar" and "affecting"! See!

      --
      Old people fall. Young people spring. Rich people summer and winter.
    2. Re:RTFA by rizole · · Score: 1

      S&M Linux? Sounds kinky. Does that have anything to do with BDSM or is that another operating system?

  23. Re:Here come the illiterate religious nuts by Mahou · · Score: 0, Flamebait

    you know, the first time i even heard of intelligent design was on slashdot. the only time i ever see a post about intelligent design is from people like you who know doubt ran off to teach yourself every little thing about intelligent design as soon as you heard about it. everytime there's a long pointless thread about science vs. intelligent design it's always started by people like you. just shut the fuck up. go make these kinds of posts on intelligent design message boards or something. WE ALREADY GET IT. and for the 10 people on slashdot that do believe in intelligent design, so what? they never say anything about it and if they ever did just mod them down and ignore them. you know why this shit hasn't died down? because of idiots like you that keep bringing it up. either go kill some intelligent design proponents or shut the fuck up and ignore them like a normal person; stop obsessing over them. "oh but if we ignore them they'll gain strength and everyone will be forced to learn ID!" yeh right. you know that isn't true and if it somehow ever did happen you would be completely justified in starting a bloody revolution. so even if you don't want to ignore them, ignore them in the hopes of being able to wage a war on them later. geez

    --
    if i'm not immortal, what's the point of living?
    ...te?
  24. Mod me down, I'm just being a dick here by heinousjay · · Score: 0

    Perhaps someone who isn't still drunk from last night can better explain where I'm coming from? :)

    See, it's your brand of wannabe cool that is so endearing about this site. You should have inserted an extraneous reference to your girlfriend, too - that would have ensured the love and admiration of your fellow palm fuckers.

    --
    Slashdot - where whining about luck is the new way to make the world you want.
  25. plz be true...plz be true... by nachtkap · · Score: 0

    so basicily what he is saying is if we step up our polution efforts and generate even more global warming me migth stand a chance to all become x-men.... hmmmmm hard choice..... koral reefs OR be a x-men >=)

  26. Luria and Delbruck by milamber3 · · Score: 2, Informative

    Wasn't this whole debate put to rest in the luria and Delbruck experiments where they showed random mutation leads to resistance not acquired immunity? Basically showing that the enviromental condition doesn't lead to the evolution it's all random.

  27. Whether or not you consider evolution to... by Expert+Determination · · Score: 3, Insightful

    ...be "gradual" or "sudden" is a function of the granularity you work at. If you take a broad overview of evolutionary history then it looks very gradual. An expert in bivalves might consider the lengthening of a shell by 2mm in a time too small to discern from the fossil record as something sudden whereas most people, in particular those studying evolution for the first time, would be entirely justified in considering the change to be gradual. So please, if you're going to argue about this, define your terms.

    --
    "The White House is not an intelligence-gathering agency," -- Scott McClellan, Whitehouse spokesman.
    1. Re:Whether or not you consider evolution to... by Chuckstar · · Score: 1

      Wish I had mod points. (To clarify, I'd mod this comment +1, Insightful.)

      I believe that the biggest impediment to understanding evolution is that people can't wrap their heads around the time scales involved. Even punctuated equilibrum argues that it takes millenia (thousands of generations) for macro changes to occur.

  28. I wrote a reply to that effect: by Morosoph · · Score: 5, Insightful
    Given the modern controversy over the role of natural selection, the article is misleading, and the headline is wrong.

    The professor hasn't challenged evolution by natural selection, but rather gradualism, as did Steven J. Gould. Darwin did posit gradualism, so an accurate headline would have been to say that the professor had challenged Darwin. As it is, it appears that it is the theory of evolution, rather than the detail of Charles Darwin's theories that is being challenged.

    The article is to be commended upon the elucidation of the "dual mutation theory"; is it a shame that it did not make clearer that this theory restores natural selection to the driving seat.

    This is important, since responsible editing that promotes truth over political advantage should seek avoid false inferences from being drawn by the less sophisticated.

    Faithfully,

    1. Re:I wrote a reply to that effect: by maxume · · Score: 1
      This is important, since responsible editing that promotes truth over political advantage should seek avoid false inferences from being drawn by the less sophisticated.

      You should use less words. How about 'responsible editing should promote truth over political advantage'. See how much better that works, and I didn't even have to promote myself as being 'sophisticated'. Not to mention that it is more good english than what you had.

      --
      Nerd rage is the funniest rage.
    2. Re:I wrote a reply to that effect: by Morosoph · · Score: 1

      Less sophisticated than the writer.

    3. Re:I wrote a reply to that effect: by plunge · · Score: 1

      Gould did not challenge gradualism. He challenged phyletic gradualism. And actually he wasn't really even the big force that made that view obsolete. It was genetics, which discovered that the vast majority of DNA is non-coding, and so actual changes to the coding portions would come in fits and starts rather than at a consistent steady pace.

      But of course, creationists and ID theorists never tell you THAT part of the story. Just that Gould supposedly called into question all of evolution and showed that natural selection couldn't be responsible. Which is nonsense.

  29. Pitt News by FirstNoel · · Score: 1

    When I was there I only read it for the Police blogs. They were the best part.

    I can't really see it matching the Washington Post or New York Times any time soon.

    Sean D.

    --
    "Hmm. I am to metaphor cheese as metaphor cheese is to transitive verb crackers!"
  30. Not a challenge at all by 955301 · · Score: 3, Insightful

    Please, stop with the sensationalism.

    All this means is that the size of a step in a particular direction an animal can take can be large to accomodate a large environmental impulse. But most environmental changes are gradual and therefore most responses are as well. Otherwise there would be big oscillations, e.g., an ostrich has a parakeet which has a penguin, etc.

    Control system 101. The guy just thinks the steps can be greater than we imagine. Makes sense since we don't get many opporunities to experience significant changes.

    --
    You are checking your backups, aren't you?
  31. One tooth at a time by gorrepati · · Score: 2, Insightful

    It is common knowledge that Darwins theory does not specifically goes into details, but gives a general framework to think evolution of organisms in. Though it is not proved, people in the community have a sense that some mutations are not gradual, and evolution does not solve some problems twice. Genetic code contains a lot of junk, but people do feel that junk has a purpose like memory about past problems. Coming to the funny part, as this guy states about evolution, fish did not ever try to grow one tooth at a time. It probably occured by hardening the jaw first, having some divisions in the jaw, having harder parts on top of the jaw(Called the tooth) and having many tooth. I seriously doubt wether this guy knows Darwins evolution at all..

    --
    You will never have experience until after you needed it.
  32. Whoa... Pitt news by 4of11 · · Score: 1

    Neat to see my school's newspaper on Slashdot!

    Not so neat to see it featured because of a misleading and poorly written article by someone who clearly doesn't know what this is about. He's not attacking evolution, he's just present an alternative to one aspect of it. The article makes it sound like this is a completely different theory. Way too sensationalist.

    1. Re:Whoa... Pitt news by gyepi · · Score: 2, Informative

      Agree. The article contains many misunderstandings. And, by the way, the article states that he is a professor in the department of history and philosophy of science - actually, he is only an affiliated/adjunct faculty member. (I am a phd there.)

      --
      Attitudes make the difference between Space and Time: we want to MAX our temporal, and MIN our spatial extension.
  33. Environmental stress does not lead to mutation by Intraloper · · Score: 1

    Not unless the stressor is a mutagen, certain chemical insults or radiation for example.

    Environmental stress leads to changes in selective pressure (not in mutation), and often to changes in the traits subject to significant directional selective pressure. This acts on the ongoing background (and relatively constant) mutation rate, to drive divergence from the existing means and toward some new equilibrium, and you get rapid evolutionary divergence from the parent population.

    Also, there is nothing in existing evolutionary theory that restricts speciation in a small or stressed population to a single common ancestor. Mutation can act within any member of the population and spread through the population from multiple individuals, and selection drives changes in gene frequency in the entire population; almost by definition, speciation is a population event, not an individual event.

    1. Re:Environmental stress does not lead to mutation by PsiPsiStar · · Score: 1

      Environmental stress leads to changes in selective pressure (not in mutation)

      Heat shock proteins, released during times of stress, can increase mutation rates. There are a number of types of environmental stress, outside of chemical or radiological insults, which can influence mutation rates.

      This acts on the ongoing background (and relatively constant) mutation rate

      I realize that some very respectable researchers have asserted a fairly constant mutation rate, but the hypervariable regions of viruses (along with other more conserved regions) seems to argue for some genetic control of the mutation rate, which might potentially be altered in the same way that genes are. A particular base mutating does not have to be equiprobable with another base mutating.

      --

      ___
      It's the end of my comment as I know it and I feel fine.
    2. Re:Environmental stress does not lead to mutation by Elwood+P+Dowd · · Score: 1
      Yes, totally.
      Also, there is nothing in existing evolutionary theory that restricts speciation in a small or stressed population to a single common ancestor.
      Wouldn't any individual gene be traceable to a common ancestor? Unless the identical mutation occurred twice? (And that's the subject of this imaginary theory that MrFlibs accidentally read into the bad science writing)
      --

      There are no trails. There are no trees out here.
    3. Re:Environmental stress does not lead to mutation by Intraloper · · Score: 1

      Absent very low probability events where two identical mutations occur in two individuals, yes, single mutations can be traced to single individuals. But that isn't enough for speciation.

  34. Re:Here come the illiterate religious nuts by Anonymous Coward · · Score: 0

    and they'll surely welcome the greeting from an illiterate anti-religious nut.

  35. mod up. by missing000 · · Score: 1

    Best comment ever.

  36. Evolution != Speciation by MarkusQ · · Score: 1

    But (as I'm sure you'll admit) evolution isn't the same thing as speciation; you could, for example, have two different species (say, hares and foxes) engaged in an ongoing arms race, evolving quite rapidly, yet neither population splitting into two or more sub-species. Conversely, you could, at least in principle, have two populations of the same species that were separated in some way gradually "drift" into separate species. So the evolution of adaptive traits is not the same thing as speciation, and, as I said before, it is natural selection, not genetic drift, which drives evolution.

    But even the case for genetic drift "causing" speciation is not as strong as you seem to think; for it to work the two populations would have to occupy very similar environments (to prevent differential natural selection from swamping out the effects of drift--remember, random walks scale with sqrt(t), while a typical bias tends to be liniar or better). When you consider that the "environment" consists of all the other species in the two environments, as well as the physical environment, and whatever is keeping them apart, and so forth...even the article you linked to doesn't make a very strong case (mostly argument from authority) for what is a rather implausible theory.

    -- MarkusQ

    1. Re:Evolution != Speciation by the+eric+conspiracy · · Score: 1

      evolution isn't the same thing as speciation

      Well, no, but evolution (at least as it is defined in the current vernacular) is the mechanism by which speciation occurs. It is interesting that in Darwin's time evolution meant something rather different, and he never or rarely used the term to describe his theory.

      So the evolution of adaptive traits is not the same thing as speciation, and, as I said before, it is natural selection, not genetic drift, which drives evolution.

      Changes in the statistics of the presence of genes in a population over time is evolution. Speciation occurs as a result of this. Mutation and sampling error are the causes. Sampling error can be random (genetic drift) or due to natural selection. In large populations genetic drift tends to be slow, but in relatively small isolated populations it can be a very large factor leading to rapid changes in the statistics of the gene pool and eventually speciation.

      There are many studies of such populations in absence of at least known natural selection factors that show evolution (changes in gene distibution statistics). While genetic drift is a stochastic process, an allele is truth state, and eventually it will propagate throughout the population, or disappear completely. The power of genetic drift effects can be seen in a striking example in the human race - every living human has mitochondrial DNA originating from a single female. There are many other examples of human populations (where natural selection is generally not a factor) that for one reason or another are genetically isolated and are quite divergent in their genetic statistics.

      The evidence is pretty clear that genetic drift is an important cause of evolution. Some feel it is mre important than natural selection.

  37. Variation _AND_ Selection by ynotds · · Score: 1
    I was getting so sick of the BS that a while before the (southern) summer holidays I dragged my ancient but previously unopened The Origin of Species out of my bookshelves as occasional train reading, now 90% done.

    When Darwin wrote it, heritability was clearly accepted as a fact, but nobody was close to thinking about the mechanisms in any more detail than an almost prurient interest in the diversity of mechanisms for reproduction.

    Over and over Darwin emphasises that variation necessarily precedes selection without pretending to have any detailed idea as to how such variation occurs. IMNSHO, the subsequent and continuing lack of interest in the mechanism(s) of variation is a big reason so many otherwise often reasonable people have trouble getting their heads around evolutionary theory. And it's not as though there hasn't been a lot of progress on that front, especially our increasing understanding of genetic recombination and regulation.

    All Darwin basically said about natural selection was based on the idea of a struggle for life, something familiar to nature and those living closest to it, but something most humans want to deny themselves and theirs any experience of. He realised that natural selection provided a much slower acting analogue of the artificial selection long practiced by breeders of varieties of domesticated animals and plants, where the breeders' fancies replaced the struggle for life as the detemining factor.

    What was most surprising was how few mistakes of detail Darwin actually made, having been born into a culture that just assumed separate creation and having to see past that himself before he could organise his thoughts.

    He was able to develop an appreciation of deep time based on little more than the obvious age of geological strata and without well understood evidence of anything more traumatic than the end of the most recent glacial advance. Plate tectonics and receding galaxies needed to wait for another century.

    Without the powerful notion of fractal self-similarity to explain the shape of the tree of life, he felt he had to go through the argument at several levels as to how a few descendants of a successful line would diversify over time, most recently to form separate species, then families*, etc. all the way back up the Linnean heirarchy.
    The understanding of evolutionary mechanism works at the level of genes, and populations whereas Darwinism was concerned mainly with species.
    It isn't the mechanism that works at the level of genes but a very narrow mathematical approach to allele frequency and similar. That power of that math still doesn't let you escape the fact that it is whole organisms through at least some kind of relationship with others of their species who either successfully breed or die virgins. Viability in nature's struggle for life is determined at every point of an organism's life cycle.

    *the prior use of terms like 'families' suggested an unstated wider awareness that some kind of relatedness might exist between species.
    --
    -- Our systemic servants do not good masters make.
  38. Huh? by paullyjunge · · Score: 1

    I guess if I was born in a jungle instead of a hospital I would've come out an ape?

  39. I'll be honest with you. I never ran the tests. by TheGuano · · Score: 1

    Stephen J. Gould whoops with triumph in his grave.

  40. Difference Engine Much? by themusicgod1 · · Score: 1

    nt

    --
    GENERATION 26: The first time you see this, copy it into your sig on any forum and add 1 to the generation.
  41. Pittsburgh Profesors Challenge Darwin by Mr.+Shotgun · · Score: 2, Funny

    SUNDAY! SUNDAY! SUNDAY!
    Be at the Pennsylvania state fairgrounds!

    As the Deadly duo

    The Pittsburgh Professors
    challenge the
    Father of Modern Biology

    Charles Darwin
    to a handicap grudge match in the steel cage.

    It promises to be a match the world will never forget as high flying theories and hard core evidence are used to bash each others skulls in.
    The Violence! The Pain! The pure Savagery! This match is not for the faint of heart, only come if you want pure action.
    Ticket are on sale RIGHT NOW! So go get some, and we'll see you sunday!

    --
    Of all tyrannies, a tyranny sincerely exercised for the (supposed) good of its victims may be the most oppressive
  42. Flaw in Shorter Form by Morosoph · · Score: 1
    'responsible editing should promote truth over political advantage'
    This suggests that political advantage was the intent. I was seeking to point out the danger in carelessness, that it might mislead some, rather than make an accusation.
  43. Seems like a good time to discuss misconceptions by plunge · · Score: 2, Informative

    This article, in a word, is bunk. The claims this guy is making are goofy and demonstrably misinformed about what evolutionary theory is.

    Some basic background:

    Punk eek was opposed to phyletic uniformatism/gradualism (which many consider to have been a cheap straw man anyway). This was a debate over macroevolutionary history: the patterns of large scale morphological and species change. Contrary to popular opinion, macroevolutionary change is subject to all sorts of different forces: things like large scale, genetic drift, extinction events, and so on. No biologist claims that natural selection is the only factor in the particular history of life on earth.

    This guy is is not talking about things on the scale of punk eek. He's talking about things on the scale of microevolution, and what he's proposing seems to be a form of saltationism. At best, he's attacking a purported gradualism in actual mutation rates (which itself is nonsense: it's mainstream genetics that different species have all sorts of different mutation rates as well as different rates of morphological change). But for all the rhetoric, nothing he says that's actually correct is even slightly revolutionary. At best, he's proposing another mechanism for variation: variation that involves "good tricks" in a certain genomic sequence that environmental stressors can make happen in many different individuals at once. But variation of ANY sort still just provides the raw material for natural selection to work on. And without natural selection at work, mutation would still be just ultimately random garbage. It's only by placing mutations through the sieve of actually being expressed in individuals that any information about the environment can be imprinted onto a given gene pool. That's the only way we know of that random jostling can be transformed into functional movement. For the mutations to somehow "predict" or "will themselves" to happen in certain linked ways that have a non-random purpose requires some other mechanism, and this guy proposes nothing.

    And that's me being the most charitable. Most of the rest of what the guy says is just total nonsense. For instance, he implies that cellular repair systems resist mutation (heck, he even speaks about whether they "willingly" resist change or not!). Well... yes. But they fail. All the time. Most everyone reading this has recent and unique several mutations, right now. And that's not even to mention that you'd have to be grossly misinformed about Darwin to think that "Darwins theory" says ANYTHING about genetic mutation. Darwin hadn't a clue what genes or DNA or the rest of it even were! All he spoke about was the differential success of different variations. Of course, what Darwin thought is irrelevant trivia to what is true in biology, but still, this guy is just showing both his ignorance and his obsession with the idea that Darwin is some sort of "high priest" whom he is fighting against.

    Now consider this: "according to Schwartz, mutations occur recessively and are passed unknowingly until the mutation saturates the population. Then, when members of the population receive two copies of the mutation, the trait appears suddenly."

    Either the reporter got this wrong, or this guy is really misinformed. Mutations can be recessive or dominant. Nothing about them makes them occur "recessively" only. While the scenario he describes can and does happen (recessive traits that don't really start appearing in force in a population until they become near fixed), nothing about it is particularly revolutionary. And something with complex functionality and specification like fully formed "teeth" is not going to evolve completely out of sight, unexpressed, and then burst onto the scene all at once. That, kids, is called saltation, and while big saltationist jumps can certainly happen (and can spring out via the recessive/dominant pathway), they are very very very unlikely to ever hit upon something functional and useful. Remember: only the actual testing

  44. Evolution of theories by VincenzoRomano · · Score: 2, Insightful

    I think that none should trash any theory, unless there are some clear evidences and, much better, when there is one theory able to provide answers when the other ones cannot.
    Evolution theory seems to be quite reasonable because it seems to rely on very few postulates when compared to other theories.
    If other theories need fewer postulates and provide more answers, then chances there are that they will succeed.
    I'd suggest a quick read of "The Fabric of reality" by David Deutsch for deeper details about this philosophy.
    In any case theories about evolution are themselves subject to evolution whenever the objective is to provide answers.

    --
    Maybe Computers will never be as intelligent as Humans.
    For sure they won't ever become so stupid. [VR-1988]
  45. blood lines by epine · · Score: 1
    There's hardly any subject that weeds out the people who can think from those who can't more effectively.

    Darwin based his theory on morphological observations long before the genetic mechanisms were first postulated. Darwin couldn't even have defined "rate of change" within the modern view. I was reading about rare blood types just the other day.

    http://en.wikipedia.org/wiki/Blood_type

    Rare blood types can cause supply problems for blood banks and hospitals. For example, U-negative and Duffy-negative are two blood groups that occur only within people of African origin, and even then they are rare traits. The rarity of these factors can result in a shortage of U-negative and Duffy-negative blood for patients of African ethnicity.

    The human species contains a lot of genetic diversity hidden away in small subpopulations. The origin of these unusual genes is most likely a slow process. However, changes in the configuration space of a population can take place extremely rapidly (tens of generations). For example, within the human species, red hair is more common among the Irish than it is among the Japanese. If it turned out that red hair confered immunity to next great plague, the configuration space of the human species could change extremely rapidly.

    Imagine you have two human populations, one with the trait "narrow hips" and the other with the trait "wide hips". The mutation "big head" might confer some survival advantage if the infant/mother survive child-birth, but each time the mutation takes place within the "narrow hip" population it soon disappears again. Natural variation can supply the same mutation over and over again but it can't take hold until it occurs against the background of a viable configuration space.

    What's most apparent in the fossil record is not the introduction of new traits, but the collapse in the diversity of alternatives. If a global pandemic wiped out the entire human population except for a small group of Duffy-negative individuals in Africa, it would seem like the "evolution" of human blood type had taken a surprising jump. Quite the contrary, it wouldn't even be anything new, but just a lot more of what you already had in the population (largely unnoticed) at the expense of a lot of diversity that used to exist.

    We've had about fifty years of experience now whether evolution runs fast or slow with since the introduction of synthetic anti-biotics.

    http://en.wikipedia.org/wiki/Antibiotic_resistance

    Resistance to individual antibiotics comes first, emergence of the superbug comes later. The superbug is just a configuration of genes that emerged elsewhere. Which portions of this process were the fast or slow parts, or does it just depend on what you are looking at (the emergence of novel genes, or the blood infection mortality spike thirty years later)?

    On the longer time scale, we see mass extinction events every 50 to 100 million years or so.

    http://en.wikipedia.org/wiki/Extinction_events

    It could be construed as periods of relative stability punctuated by great change. Or in the cartoon mentality that pervades these debates: fifty million years of not much happening, then blam an asteroid strikes and evolution kicks itself into high gear. Here's the question. Take a species that survives the extinction event (after 50 million years of relative stability) and ask yourself this: if the asteroid had struck twenty million years sooner, would that species have survived? Or did something not terribly obvious change within that species during that time period that permitted it to survive when it might not have otherwise? Or conversely, did "quiet" changes take place in other species who would have survived if the asteroid event had come sooner, but didn't in the e

  46. Environmental causes by DeBeuk · · Score: 1

    Changes in the environment cause 'evolution'. If the changes are gradual, species will have longer to adapt. If the changes are sudden, then affected species have to adapt rapidly or become extinct.

    --
    Reality has a notoriously liberal bias -- Stephen Colbert
  47. Oh yes indeed by Nursie · · Score: 1

    There's some crazy, crazy, irrational people out there. I'm not sure they aren't growing innumbers as well.

    Welcome to the new dark ages....

  48. Playing with words by MarkusQ · · Score: 2, Insightful

    Changes in the statistics of the presence of genes in a population over time is evolution.

    No, this is a meme of the anti-evolution crowd (part of the "scientists dispute evolution" nonsense) that is to often repeated by loose-thinking scientists and popularizations. You are confusing one of the intermediate effects of evolution (an effect which, as you note, could have multiple causes apart from evolution) with evolution itself. Lets see how that sort of fuzzy thinking looks like in another environment:

    Changes in the statistics of the presence of the sun in a the sky over time is the heliocentric theory of the solar system.

    To which, of course, you reply: No, no, no! The heliocentric theory of the solar system explains why we see the sort of pattern of sunlight that we do--it isn't just the change in sunlight, but a specific theory that predicts why we see the sort of patterns of change of sunlight that we do.

    Same deal in evolution. Or to bring it on home: giraffes, bats and whales all had a reasonably recent common ancestor. There is no reason what so ever for genetic drift to have taken this common ancestor towards any of the three forms in particular. The amazing fact is, we do not find whales grazing the savanna, bats swimming in the open sea, and giraffes hanging upside down in caves. The odds against the situation we do see are already pretty steep, and when you throw in polar bears, monkeys, elephants, house cats, foxes, and so on it gets down right amazing that every population seems to have "drifted" from the common ancestor in a way that suited its environment.

    Now, the genetic drift idea just leaves this hanging out there, and doesn't even attempt to offer an explanation (which is why the closet Intelligent Design people keep trying to keep it in play). But Darwin makes a bold prediction; this directed change is not the result of any magical force, but rather the effect of a simple, natural process; the change was random, but the maladapted variants died off at a faster rate than the rest. In the ocean, bat-like mutations just didn't do as well as the whale-like mutations.

    There are many studies of such populations in absence of at least known natural selection factors that show evolution (changes in gene distribution statistics).

    Same problem: evolution isn't just change, it's adaptive change.

    While genetic drift is a stochastic process, an allele is truth state, and eventually it will propagate throughout the population, or disappear completely.

    Granted. But it's a string of nonsequitors.

    The power of genetic drift effects can be seen in a striking example in the human race - every living human has mitochondrial DNA originating from a single female. There are many other examples of human populations (where natural selection is generally not a factor) that for one reason or another are genetically isolated and are quite divergent in their genetic statistics.

    This is another Intelligent Design meme: that some how, humans are magically out of reach of natural selection now. It is completely unfounded--unless you are claiming that something like "everyone has exactly the same number of children" or "people's inherited characteristics have no effect on their breeding success", you'll see it as soon as you stop to think about it.

    But in any case, even if it wasn't begging the question, why should we be the least bit surprised about the mitochondrail DNA?

    The evidence is pretty clear that genetic drift is an important cause of evolution. Some feel it is more important than natural selection.

    The evidence is smoke and mirrors and the people who have been taken in by it either 1) have an agenda or 2) aren't thinking very clearly. You can trot out all the "experts" that you want, but if an idea doesn't hold water (or, as in this case, needs a supernatural entity to care the w

    1. Re:Playing with words by the+eric+conspiracy · · Score: 1

      evolution isn't just change, it's adaptive change.

      Sorry, that is just not correct. Evolution is NOT defined in modern biology as adaptive change. Your basic premise is wrong, making your arguments specious.

      Here's a link to a relevant page in a decent online Biology text. Give is a look.

      http://users.rcn.com/jkimball.ma.ultranet/BiologyP ages/H/Hardy_Weinberg.html#When_the_Hardy-Weinberg _Law_Fails_to_Apply

    2. Re:Playing with words by MarkusQ · · Score: 2, Insightful
      evolution isn't just change, it's adaptive change.

      Sorry, that is just not correct. Evolution is NOT defined in modern biology as adaptive change. Your basic premise is wrong, making your arguments specious.

      Funny, I feel the same way about your argument. A quick google shows about a 50/50 split in the definitions which specify "adaptive change" (in some form or another) as opposed to the ones such as you site. To give just a few examples:

      But, as I pointed out, this isn't a problem that can be solved with dueling citations; even starting down that path misses the fundamental point that genetic drift alone can't explain any of the key observations about life:

      • It is very diverse
      • The diversity is (to a good first approximation) perfectly adaptive
      • When you drill down to a more detailed accounting it is still adaptive, but at the level of genes, not individuals or populations (e.g. see Dawkins "Extended Phenotype")
      • It is optimal, in the sense that permuting the diversity in any way (e.g. hanging giraffes from cave roofs) would destroy one or more of the points above.
      So if you define "evolution" as above, you wind up faced with the fact (from your source) that "Drift produces evolutionary change, but there is no guarantee that the new population will be more fit than the original one. Evolution by drift is aimless, not adaptive." and you have done nothing but muddy the waters. By calling every change "evolution" you admit more causes which can do nothing to explain anything that needed explaining.

      For example, suppose a new school of "economic biologists" broadened the definition of evolution still further, to include (say) a change in the average market value of a member of the species or the number of books in which it is mentioned. What good would that do? Now there would be a whole bunch more things that could cause "evolution" but they would have done nothing to clarify the question--instead, they would have confused things horribly.

      And that, pretty much, is what "population genetics" has done. The questions are murky enough at the level of the individual organisms, but by considering populations you effectively average out all the interesting questions and wind up making vacuous statements such as "genetic drift causes evolution" where "genetic drift" is defined (again from your source) as what happens when, by chance "the frequency of an allele may begin to drift toward higher or lower values."

      Combining this with your definition of evolution, we have:

      The frequency of an allele drifting toward higher or lower values causes changes in the statistics of the presence of genes in a population over time.

      Which, as I hope you can see, has no explanatory value whatsoever and makes no testable predictions to speak of (though the converse would be world shaking news).

      --MarkusQ

    3. Re:Playing with words by the+eric+conspiracy · · Score: 1

      the fundamental point that genetic drift alone can't explain any of the key observations about life

      Alone, no. But adaptive change falls far short of explaining diversity too. Let's look at some of your points:

      -> The diversity is (to a good first approximation) perfectly adaptive

      Adaptive variation is in fact much less than non-adaptive variation - and it MUST work that way because an organism cannot predict what kind of variation will turn out to be adaptive in advance. Variation due to genetic combination can be favorable, neutral or unfavorable from a survival point of view, and a lot of variations must be emprically tested to end up with a favorable variation. The result is in fact opposite to your point - to a first order all variation is random, non-adaptive. Only later does the environment categorize the variation. Unfavorable variations will be eliminated from the gene pool by selection, and favorable ones will survive, but neutral variation will also survive.

      Since this variation leads to speciation the conclusion is inevitable that non-adaptive change leads to more speciation than adaptive change. This is borne out by what we know of the history of life - there is far more speciation and variation than can be explained by mere adaptation.

      -> It is optimal, in the sense that permuting the diversity in any way (e.g. hanging giraffes from cave roofs) would destroy one or more of the points above.

      I have NEVER seen any biologically rigorous claims that variations in genetic populations gives anything close to optimal. Look at the human body - it is full of design flaws that keep doctors plenty busy. Nature is pragmatic, not optimal - it produces organisms that are 'good enough' to reproduce.

      your definition .. has no explanatory value whatsoever

      My definition is superior in explanatory value because it is measurable. Genetic analysis can confirm precisely and quantitatively changes in allele distribution. Your meaning ("adaptive" change) is much worse because it requires somebody to figure out if what a change is and if it is adaptive or not - and if you think about it that really is hard to determine rigorously and measure quantitatively. In the sciences this subjectivity is anathema. Starting with measurable facts you can then build quantitative theories. Start with subjectivity and you will make more subjectivity.

      Statistical genetics, biophysics and biochemistry is replacing the old descriptive biology. It is a trend for the better because it is injecting rigor into the science. It is also the anvil on which creationism is being beaten flat.

  49. Certainly creationism has been refuted. by Stoutlimb · · Score: 1

    Creationism and ID states that the universe is only several thousand years old. Our observations of the universe clearly show objects millions and billions of years old. That's all that is needed to refute ID.

    1. Re:Certainly creationism has been refuted. by arminw · · Score: 1

      .....Creationism and ID states that the universe is only several thousand years old......

      I was not talking about the supposed ages espoused by one or other conjecture, only that none of them have been proven in any experiments and are therefore only beliefs.

      One of, if not THE central claim of evolution is that the more complex life-forms evolved from the simpler ones.

      Evolutionists claim for example, that birds evolved from reptiles. A valid experimental proof of this idea would be to make some kind of bird from two reptiles. That however is admittedly too complex for our present knowledge of biology. A simpler experiment with two very different single celled creatures would certainly also prove the possibility of making a more complex creature from one or more simple ones. Even taking a relatively small collection of the same type of cells, say amoebas and fashioning a new self reproducing organism from them would certainly prove that this claim of evolution is a fact. The claim that the complex arises from the simple has never been tested by experiment. The laws of entropy show that complex systems, left to themselves, degenerate into increasingly simpler pieces. The mess in your house doesn't clean itself up by without the input of energy and information.

      My previous post mentioning fruit flies is another test.

      --
      All theory is gray
  50. Perhaps then you only... by leonbrooks · · Score: 1

    ...previewed the theory?

    (grin/duck/run)

    --
    Got time? Spend some of it coding or testing
  51. Except in this case, by leonbrooks · · Score: 1

    it's essentially without the "equilibrium" part. (-:

    SJG advocated "survival of the luckiest" rather than "survival of the fittest", which is another distinction between punk-eek and this.

    But yes, it is different to moribund gradualism. Now all they need is an actual mechanism, and they're away. Cue much hooting and jeering from the Progressive Creation crowd.

    --
    Got time? Spend some of it coding or testing
  52. That depends on what you mean by "large" by leonbrooks · · Score: 1

    The results of a change in genetic coding are not bound to reflect the size of the change itself.

    The fact that you've bolded "beneficial" seems to imply that you understand this already, but I see no particular reason to arbitrarily decide that a more sweeping effect is going to be more survivable than a small one. Intuition tells us that a small experimental change is easier to manage than a larger one, but Real Life(tm) may not agree with our intuition.

    As a thought experiment, consider a hypothetical species of gliding squirrel which is, overnight, trapped on an island as a large wave comes through and erodes the land-bridge connecting the colony to most of their food sources. I chose a gliding quirrel for their noted swimming abilities (ie, they don't have any). If a large mutation tripled the gliding range of one of the squirrels and allowed it to glide ashore to food, and back to mate, the massive advantage this confers might more than compensate for other massive damage (albinism, susceptibility to cancer, ugliness, reduced ability to grip trees, whatever) caused by a "reckless" mutation.

    Sound plausible? That's the beauty of thought experiments: it's very difficult for anybody to prove you wrong. (-:

    I suspect that this theory is, at heart, being mooted as an answer to the concept of Irreducible Complexity. It isn't, but it does look like a step in the right direction.

    I wonder if it would be worthwhile tossing together a thesis on the developmental progress of all of these attempts to replace an obviously broken set of theories with one that bears at least a passing resemblance to reality? I could call it something like "the evolution of evolution" and flog the film rights for a small fortune. Genius (sometimes demented) plays the role of mutation, and peer pressure (often wrong) plays the role of natural selection. It's bound to be a winning formula!

    --
    Got time? Spend some of it coding or testing
  53. Diversity != Variation by MarkusQ · · Score: 1

    At first I was astounded by your response; then, I realized, that you had systematically missed the point, by substituting the concept of variation (differences amongst individuals) for the concept of diversity (the range of different types of creatures in existence) that I explicitly used. Thus, you are (consistently, at least) talkinmg about why Spot has large brown spots and Rover has small black spots and ignoring the larger issue of why dogs exist in the first place.

    So going back over it again, but keeping these two concepts straight:

    1. Natural selection (as you state) does not, on its own, explain variation; it was never intended to. Instead, it simply assumed some supply of variation, and used it to explain diversity, which it does (and genetic drift, et al, can not, even in principle[1]).

    2. The diversity (not the variation) is almost perfectly adaptive. We do not see whales-like creatures stubbornly living in caves. By the same token, variation is almost perfectly non-adaptive; if there were an even mildly significant advantage to one variety over another, we would see only the more adaptive variation in relatively few generations.

      As an aside, your argument that "it MUST work that way because an organism cannot predict what kind of variation will turn out to be adaptive in advance" is flawed. Evolution is no guarantee that organisms will be adaptive in the future; it only appears that way when (as is often the case) the future turns out to be fairly similar to the past. And, in any case, you are confusing levels; even if organisms could predict what would be adaptive in the future, they have no way (short of genetic engineering on themselves) to act on the information.

    3. As for the optimality point, a human (to choose your example) may well be loaded with design flaws. That doesn't matter in the slightest, so long as some other creature can't walk in and swipe his niche.

    4. You write "My definition is superior in explanatory value because it is measurable."

      That's just silly. Suppose that some manned mission to Mars were to find crates and crates of hand-copied volumes of Jane Eyre just sitting around on the sand. And suppose, after careful study by a team of experts, it was found that the books weren't all identical; that, in fact, there were minor differences between them and, so far as the experts could tell, no two copies were alike. Further, by doing some detailed statistical analysis, they were to determine that (to within some margin of error) all of the differences between the books could be explained by random processes, and anounced this as their explanation.

      Suppose further (but just a little bit further) they were accused of missing the main question, and by defining the question to be "why do these books vary", producing a theory with no predictive or explanatory power. If they responded "my definition is superior in explanatory value because it is measurable," would you just accept it?

    I have read On the Origin of Species cover to cover twice, and a few things are clear:

    • The theory was not intended to explain variation within a species (it was, rightly, taken as a given); a priori one would assume that different physical object will be different, and thus we only need seek explanation for differences that appear so well suited to some purpose that one might assume they were designed for that purpose, or otherwise display a highly non-random distribution.
    • The question of speciation was not "how do populations that are almost identical but don't or can't interbreed come about" but rather "how do wildly different types of of creatures, all reasonably well suited to their environment come about." What you are calling "speciation" was a minor detail and essentially assumed (mostly through geographic isolation, but he made it clear that there were other mechanisms that would serve as well).

    I appologize for the probably higher level of typos in this post; I've had a sick one-year old sleeping on my lap through most of it.

    --MarkusQ

    [1] Unless you're going to drag in some sort of anthropic argument.

    1. Re:Diversity != Variation by the+eric+conspiracy · · Score: 1

      I realized, that you had systematically missed the point, by substituting the concept of variation (differences amongst individuals) for the concept of diversity (the range of different types of creatures in existence)

      It is not a matter of substitution, rather looking at the cause. Variation is what leads to diversity. The fact that variation is the mechanism that permits adaptation and also can have other side effects leads to the conclusion that diversity is not necessarily primarily adaptive in origin.

      While we do not see whales living in caves we certainly see non-adaptive diversity in nature. Specialtion of house mice on different Pacific islands is a common example - the environments and therefore selective pressures are presumably the same. Yet the mice have very different genetic content between populations. Yes, the mice will still be adapted to their environment. But none the less there is non-adaptive diversity. And lots of it too, because many species can live in a given niche.

      As far as the definition of evolution, I give up. I've given you citations and sound fundamental philisophical resaoning as to why the correct view is that evolution is change in genetic population. I don't have anything else.

    2. Re:Diversity != Variation by MarkusQ · · Score: 1

      Variation is what leads to diversity.

      No. Variation is necessary for diversity (since without it there would be nothing for natural selection to act on) but random variation on its own simply can not lead to adaptive diversity. The universe isn't nearly old enough for this to be even remotely plausible. Remember, that random walks are, at any given step, as likely to revert as advance; their mean net progress only scales with the square root of time.

      But, if you add a bias (i.e. natural selection in this case) progress--however you define it--can be much faster.

      Imagine a little solar powered toy that occasionally hops straight up a centimeter or so, standing on a level table top, and another identical toy standing on a slightly tilted table top. Which do you suppose will make it to the edge first? And, more importantly, in which case can we make meaningful explanatory/predictive statements about which edge of the table it will ultimately fall off of?

      Specialtion of house mice on different Pacific islands is a common example - the environments and therefore selective pressures are presumably the same. Yet the mice have very different genetic content between populations.

      Yes, this is a classic case of population geneticists missing the trees for the forests. Why? Because the environments are so glaringly different, yet the difference is so easy to miss if your mind is stuck on populations that it makes a wonderful ah-ha! teachable moment.

      Spotted the difference yet?

      I won't do the "scroll down...." trick you see in e-mail, and I suspect slashcode wouldn't let me get away with if I tried, so here goes. If you think about populations of mice instead of individual mice, you will miss the fact that one of the key factors in the environment of any individual mouse is other mice. The very fact that the populations differ in genetically significant ways means that mice in these populations are in significantly different environments, because they have to deal with different sorts of mice. That, and time, is all it takes to get a peacock's tail or a human brain.

      As far as the definition of evolution, I give up. I've given you citations and sound fundamental philisophical resaoning as to why the correct view is that evolution is change in genetic population. I don't have anything else.

      If you gave any sound fundamental philosophical reasons, I missed them. I will go back and read through your posts again. As I recall, the only arguments you gave favoring your definition were 1) argument by authority (which, in this case, is doubly suspect because so many "experts" on evolution these day are either closet ID proponents trying to discredit it from within, or honest but timid to the point where they will misstate their case to avoid confrontation with the former), and 2) because it is measurable.

      Contrast that with the facts that 1) it isn't what people in general mean by evolution, or even what specialists mean, in my experience, and 2) it cuts out all the interesting questions, leaving only tautologies. I've explained the second point previously, but let's look at the first:

      Suppose I have a puppy with short, straight brown hair, and one day I buy two poodles with long, curly black hair. Is that evolution? I suspect most people, even population geneticists, would say no. But, as you will note, it does meet your over broad definition, and, if you really pelived what you wrote, you would have to say that it was evolution.

      --MarkusQ