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The BBC's Distributed Climate Prediction

CongoJoe writes "The BBC has teamed up with Oxford University to conduct the world's most ambitious climate modeling experiment." From the article: "Trying to predict climate change is hard. There are lots of factors involved - air temperature, sea temperature and cloud cover all play a part - as do dozens of other variables. Therefore, there are a huge number of calculations involved ... Using a technique known as distributed computing, we're hoping to harness the power of thousands of PCs around the world. If 10,000 people sign up, we'll be faster than the world's biggest computer. And we're hoping to be even better than that."

83 comments

  1. I wonder what would happen by artifex2004 · · Score: 4, Insightful

    if those 10,000 people turned their computers off, when not in use, instead?

    Not that I don't think this is a good investment of spare cycles. I'm just wondering what the power savings would be, as an alternative.

    Also, I notice there is no OSX client, only Windows and Linux.

    1. Re:I wonder what would happen by Animekiksazz · · Score: 3, Informative
    2. Re:I wonder what would happen by iangoldby · · Score: 4, Informative

      RTFA.

      They explicitly tell you in the instructions (several times) that you should not leave your computer switched on any more than you would without the simulation. You should use your computer as normal, shutting it down when you don't need it.

    3. Re:I wonder what would happen by artifex2004 · · Score: 2, Interesting
      RTFA.
      They explicitly tell you in the instructions (several times) that you should not leave your computer switched on any more than you would without the simulation. You should use your computer as normal, shutting it down when you don't need it.


      Actually, the information isn't in the article. It's off in the FAQ. The 4-part instructions just say install it and sit back, too. :)
    4. Re:I wonder what would happen by iangoldby · · Score: 1

      Actually, the information isn't in the article. It's off in the FAQ.

      Fair point. I suppose I'd regard the FAQ as part of the documentation, and therefore part of the article. But you certainly wouldn't see it at a cursory glance.

      Regardless, I wonder how many people will simply ignore the advice and leave their PC on 24x7?

      I won't be downloading the simulation. My home PC is generally only switched on for a short time each evening while I check email and read the news. I would take way longer than their target time to complete a single simulation on that basis.

    5. Re:I wonder what would happen by homer_ca · · Score: 1

      If you want some numbers for a rough estimate, my Athlon 64 system runs at about 85W power consumption idle and 120W at full CPU load. Running the simulation when you were planning to keep the computer switched on anyway consumes an additional 35W, and obviously running the simulation when you were planning to keep the computer switched off consumes an additional 120W, unless you subtract the idle power draw of an ATX PC which can be 2-5W. Multiply that by 10,000 computers and you're talking about 350 kW or 1.2 MW.

    6. Re:I wonder what would happen by Anonymous Coward · · Score: 0

      Good thing we're not all running Einiacs!

      Now where'd I put that box of spare vacuum tubes and relays...

    7. Re:I wonder what would happen by artifex2004 · · Score: 1
      Regardless, I wonder how many people will simply ignore the advice and leave their PC on 24x7?


      Well, and another kicker is, many modern CPUs consume more power when busy than when idle. Especially since chipmakers wised up and started implementing the ability to idle down in order to decrease heat and, of course, use less electricity. So basically, this program is going to use more electricity even if every single person turns their machines off when they step away for more than a minute or so.

      But you are right, I could have looked deeper than the front page we were sent to :)

    8. Re:I wonder what would happen by j-cloth · · Score: 2, Funny

      So, 10.1 million computers would be 1.21 gigawatts! But the only power source capable of generating 1.21 gigawatts of electricity is a bolt of lightning. Unfortunately, you never know when or where it's ever gonna strike.

    9. Re:I wonder what would happen by Anonymous Coward · · Score: 0

      Sorry- misspelt "Eniac"

    10. Re:I wonder what would happen by StikyPad · · Score: 1

      Even so, increased CPU load during otherwise idle times will increase power consumption, albeit not as much as the difference between idle and off.

  2. outsourcing by reptilian+biotech · · Score: 2, Funny

    I am concerned about sending my spare CPU time overseas, i mean, they say they are "climate modeling", but could they not just as easily be selling this "distributed" computer network to the black market, or Iran, or doing nuclear weapons simulations?

    I mean, they ARE british, and you all know what happened last time they got their hands on a bunch of CPU time- that poor kursk...

    How bout the dental hygene simulator project?

    sorry, just had to rip on some of my brit friends today :)

    1. Re:outsourcing by reptilian+biotech · · Score: 0, Offtopic

      I think i would rather be bitten by a komodo dragon!

      www.superbritteethdistributed.net

    2. Re:outsourcing by gronofer · · Score: 1
      You are paranoid, this is the BBC.

      Most likely their true purpose is something mostly harmless, such as CGI scenes for the next Doctor Who series, or perhaps an accounting system for the billions they collect in licence fees.

      What is "that poor kursk", exactly, the Russian city or submarine? Neither was constructed on British CPU time as far as I know.

    3. Re:outsourcing by DigiShaman · · Score: 1

      How dare you!! Nothing is more important then tea. To the british, tea is everything.

      Now stop your whining and go back to your tea....err....climate modeling.

      --
      Life is not for the lazy.
  3. Only 10,000? by Anonymous Coward · · Score: 0
    Using a technique known as distributed computing, we're hoping to harness the power of thousands of PCs around the world. If 10,000 people sign up, we'll be faster than the world's biggest computer. And we're hoping to be even better than that."

    They are hoping for only 10,000? SETI@home has 50 times as many participants.

    What I want to know is: Why haven't we seen a distributed computing application implemented in javascript and embedded on pr0n sites, or hell, even in flash ads or something. The user's machine can chug away at some small task for a little while and report back the results when the tab is closed via HTTP.

    And when are we going to see a real market develop for raw computing cycles? How many $$ per teraflop-hour?

    You heard it here first...

    1. Re:Only 10,000? by Tx · · Score: 3, Interesting

      I suspect cpdn gets a lot more work out of each client. Rather than breaking the job into little work units like S@H, each client runs a complete simulation lasting hundreds of (simulated) years, and taking weeks of heavy cpu usage to complete. At least this was the case when I took part ages ago, it kept my cpu working very hard.

      --
      Oh no... it's the future.
    2. Re:Only 10,000? by Animekiksazz · · Score: 3, Informative

      Sulphur cycle models now take about 1200 hours on my 2.4 GHz X2* to complete. Trickles are sent about every 7-8 hours I think. So you get credit every 7-8 hours, and bits of the results are uploaded. You can follow along on the graphs they provide.

      I'm running a Spinup test model, they want 200 simulated years. It's taken 1891 hours for 68.69%. You'll never get this model though, so you don't have to worry about this much computing time.

      * One model per core

    3. Re:Only 10,000? by Anonymous Coward · · Score: 0

      124 trickles per 8 hours = 994 hours. That's what I get on my overclocked Athlon 64 3000+ @2.4 GHZ as well. I think your 1200 are a too high estimate.

  4. Extra Power Consumption by alanxyzzy · · Score: 3, Interesting
    I just happened to have the computer I installed the software on plugged into a Brennenstuhl PM230 power meter. With the client suspended, the computer draws 78W, running it draws 103W. 25W times 47,000 hosts is more than a megawatt!

    Case/PSU: Asus TA-211
    M/B: Asus K8V-X SE
    CPU: AMD Sempron 2800+

    1. Re:Extra Power Consumption by gronofer · · Score: 1

      25W per machine is presumably better than you could achieve using a dedicated server farm though? And you also save the energy costs of building the machines and shipping them from China.

  5. Old news by squoozer · · Score: 1

    This climate prediction group has been going around 2 years. All that has happened is they have managed to talk the BBC into some free advertising. I tried running the software but I found that it caused localized warming especially around my CPU.

    --
    I used to have a better sig but it broke.
    1. Re:Old news by Epi-man · · Score: 1

      I tried running the software but I found that it caused localized warming especially around my CPU.

      At least you got the software to actually work. For some reason that no one seems to care about on the forums, my machine can't talk to their servers. I am running FC4 at work on a machine I am required to keep up, and would love to run this stuff (any BOINC project) since it will be running when I am not around, but can't. At home, no problem, but at home, the machine is off. Right next to the FC4 machine, an XP machine, no problem. WTF? I see other people's posts on the forums that look like mine, but no one has an answer, very annoying.

    2. Re:Old news by squoozer · · Score: 1

      I certainly understand where you are coming from there. I felt their Linux support was very poor considering the number of clients they would be likely to get. I realize that the total number of Linux installs is tiny compared to Windows but they are run by people that historically are interested in this sort of thing. At a minimum I think they should have given it a primative GUI and made packages for all common distros (no .deb as usual).

      --
      I used to have a better sig but it broke.
    3. Re:Old news by jazir1979 · · Score: 2, Interesting

      I just downloaded and installed it on FC4, via their shell script, and it has a GUI that works just fine.

      --
      What's your GCNSEQNO?
    4. Re:Old news by Epi-man · · Score: 1

      I just downloaded and installed it on FC4, via their shell script, and it has a GUI that works just fine.

      That's what happened to me at home as well (over dialup), but here at the office, no joy. I posted to the forum, had something like 50 views in a couple days, still have zero replies (after over 120 views and 55 days). They have no support, which I guess is understandable, but at the same time, it seems a shame to know there are probably a lot of resources not being used.

  6. New version? by Tx · · Score: 1

    At least I guess its a new version of this, ran the cpdn client for a few months ages ago (must be well over a year ago actually). I eventually stopped because I have a variable speed fan, and the cpdn client kept my cpu working hard enough to spin the fan up to 5000 rpm, which is a bit noisy. Normally that only happens during heavy gaming.

    --
    Oh no... it's the future.
  7. Biggest? by prefect42 · · Score: 1

    Why do I doubt that 10,000 garden PCs offering up idle time will compete with the current t500 leader (280.6 TFlop/s, 131,072 processors)?

    Seeing as even a moderate sized cluster is say a dedicated 256 nodes, surely this isn't going to offer anything more than loose change. 1 million PCs, chipping in 5% of their time sounds useful.

    --

    jh

  8. Whoa, I stand corrected. :) by artifex2004 · · Score: 1

    Weird how it doesn't show up on the page the BBC wants you to go to, though.

    1. Re:Whoa, I stand corrected. :) by Animekiksazz · · Score: 1

      That's very odd of them.
      I do know that they have, or were expecting to get a G5 for testing. But I'm not sure if they have yet. So Mac's don't get as much love as they probably should. But they are trying. I have no idea what's going to happen with the x86 Macs though.

  9. update: by artifex2004 · · Score: 2, Informative
    Unfortunately the Apple Mac is not yet supported for the BBC Climate Change Experiment. You can though install OS X compatible climate experiments from climateprediction.net.


    So no, the BBC experiment itself doesn't have an OSX client.
    1. Re:update: by Animekiksazz · · Score: 1

      Ah, I'm sorry, I didn't realize they were seperate. I thought the BBC were just pimping CPDN.

    2. Re:update: by artifex2004 · · Score: 1
      Ah, I'm sorry, I didn't realize they were seperate. I thought the BBC were just pimping CPDN.


      NBD. My Mini is pretty useless for Mersenne finding, so I'm casting around for anything remotely useful for it to do while idling.
  10. This is really creepy by tibike77 · · Score: 1

    Hmmm, creepy.

    I just saw the story now, never heard about this thing before.
    I download the software, I install it, I run it, I select "new user", enter my google mail as mail to be used... and surprise: "that email is already in use and you entered a wrong password".
    And no, I am 100% sure I didn't do it before, and there's nothing in my e-mail about it, and the passwords I use for "low security" and/or "disposable" things is completely different from my e-mail password, etc.

    So, that tells me one of two things:
    - either they don't verify the email address AT ALL (why the heck do they require one then) *AND* somebody used MY email address to enroll (wtf)
    - or their software got bugged (or funnier, slashdotted ?)

    Anybody else got this problem, or is it just me ?

    --
    By reading this signature you agree to not disagree with the post you just read.
    1. Re:This is really creepy by iainl · · Score: 1

      Have you used the address to sign up for either the old (two years old) Climateprediction.net client, or anything else that uses BOINC?

      Because that would do it.

      --
      "I Know You Are But What Am I?"
    2. Re:This is really creepy by tolan-b · · Score: 1

      Seems to be bugged, I get that message whatever email address I put in.

    3. Re:This is really creepy by tibike77 · · Score: 1

      Seti@home ? Folding@home ? Nothing else with distributed computing I can recall.
      But then again, my problem is I didn't *HAVE* a gmail address 1 year ago, and if *I* would have joined, I would have used my "default"/"disposable" password... which does not match.

      --
      By reading this signature you agree to not disagree with the post you just read.
    4. Re:This is really creepy by iainl · · Score: 1

      Certainly Seti, and I _think_ Folding are using Boinc now, so you might have an account through them. But I may well just be wrong.

      I gave up on it ages ago, anyway - unlike Seti and Einstein, the Climate one has work units that go on for months, and if you box isn't on 24 hours a day then you may well fail to get all the work done before the deadline. I think they made a huge mistake with the setup, so I abandoned it.

      --
      "I Know You Are But What Am I?"
  11. "Climate modeling is hard!" by Shag · · Score: 1

    Sure it is, if you're going for a really high degree of granularity. Town-by-town climate change, just where along the coastline that hurricane is going to hit, or whatever. Modeling on the larger scale is probably a lot more feasible given their resources.

    But then, there are plenty of people doing larger-scale modeling. And there have been, for years. And it's not like they keep their results secret. So we can just Google them.

    (Insert gratuitous "Doesn't anybody use Google anymore?")

    --
    Village idiot in some extremely smart villages.
    1. Re:"Climate modeling is hard!" by Lars+T. · · Score: 1

      where along the coastline that hurricane is going to hit is weather, not climate.

      --

      Lars T.

      To the guy who modded me down from perfect to terrible Karma - Apple haters still suck

  12. BBC go away, come again another day by ar32h · · Score: 1

    You know, I would actually consider running this if the BBC didn't have such a reputation for being nationalistic information hoarders.

    Time and again they release something cool, a new media archive for example, and trumpet it far and wide only to say in the fine print that it is only for people who live in the UK.

    How do I know that they won't take the work of my processor and only allow people in the UK to view the aggregate results? "I'm sorry, but the final assembly work was paid for by our TV tax, which you don't pay, so go away."

    1. Re:BBC go away, come again another day by WillAffleckUW · · Score: 1

      How do I know that they won't take the work of my processor and only allow people in the UK to view the aggregate results? "I'm sorry, but the final assembly work was paid for by our TV tax, which you don't pay, so go away."

      You can always sign up and pretend you're from Leeds - they don't actually check where the account is actually located, provided you use a .uk or .eu or .com site that has service in the UK.

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    2. Re:BBC go away, come again another day by north.coaster · · Score: 2, Informative

      If you don't trust the BBC, then sign up via the original web site at Oxford University. This distributed computing experiment as been running for a couple years (I was a beta tester). They have already published some initial results.

    3. Re:BBC go away, come again another day by NoMaster · · Score: 1

      Don't worry - information wants to be free, remember? The results will soon leak out and be available all over the world, just like those Abu Ghraib photos and Oreo cookies...

      (Sorry 'bout that - it just occured to me last night, while watching TV, that it's the little things that piss people off about American social imperialism. Oreo cookies displacing local styles and brands of biscuit, fugly American-styled cars from Japan and Korea displacing attractive cars from Japan and Korea, etc...)

      --
      What part of "a well regulated militia" do you not understand?
  13. Misleading on multiple levels. by DerekLyons · · Score: 1

    There are a number of things TFA doesn't tell you, or misleads you about.

    1) The Climate Prediction experiment has been going on for several years now, first as a standalone application (like Seti@home), and now as both as a BOINC (Berkeley Open Infrastructure for Network Computing) application.

    2) There are multiple BOINC [distributed computing] projects with greater than 10,000 users (see here, and here.) - thus even if the BBC meets it's goal of 10k users, it will still be far from the largest.

    1. Re:Misleading on multiple levels. by carlgt1 · · Score: 1

      that 10K isn't quite accurate, they really mean it's really greater than the largest supercomputer available to climate researchers, i.e. the huge bigblue ones are to help Dick Cheney bomb people! ;-)

  14. Why is it... by thrill12 · · Score: 2

    ..that people applaud something like Mersenne's Prime or SETI when spare CPU cycles are concerned,
    but when an action to the benefit of everyone - namely checking up on the environment - is undertaken using the same technology that those same people start commenting on artificial climate change:
    "what about the power usage", "this will cause more rapid climate change" etc etc.
     
    Is it either that

    a. those people believe the climate WILL change through use of more computers ...

          1. but do not want to know about it

          2. and feel that any action towards proving it further is useless

    b. are in the climate-does-not-change-artificially group and will take any reason - even those undermining their own stance - to support it because....

          1. they do not want to know whether they are wrong

          2. feel that there is enough proof already that the environment is not changing

    Could anyone explain the logic behind the reasons A1-B2 ?

    --
    Slashdot: stuff for news, nerds that matter, matter for news, stuff that nerd
    1. Re:Why is it... by WillAffleckUW · · Score: 1

      ..that people applaud something like Mersenne's Prime or SETI when spare CPU cycles are concerned,
      but when an action to the benefit of everyone - namely checking up on the environment - is undertaken using the same technology that those same people start commenting on artificial climate change:
      "what about the power usage", "this will cause more rapid climate change" etc etc.


      Actually, you can also sign up to share your unused computer cycles for Biological Structure prediction, here at the UW in Seattle.

      Just, think, you too can help find out how biology and chemistry actually work, and save half the energy by turning off your monitor while it churns through the structure predictions.

      Can't recall the link, but you can probably Google for Baker Labs and UW and Structure Prediction and find a link somewhere.

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    2. Re:Why is it... by radtea · · Score: 1

      but when an action to the benefit of everyone - namely checking up on the environment - is undertaken using the same technology that those same people start commenting on artificial climate change: "what about the power usage", "this will cause more rapid climate change"

      The reason this comes up is that when the topic is climate-change-related people have climate change on their minds. Consider the mind as a disorganized collection of files with links between them whose strength is based on the number of items the files have on common. Most people are incapable of holding more than two files in their heads at once, so any two things must be no more than one strongly-linked step apart to be considered at the same time.

      If you are thinking about climate modeling, you are holding a file that has a lot of stuff about the environment, effects of things on climate, etc. So there are a lot of climate-related files that are only one link away, and it is easy for you to be "clever" and bring one of them up. Because danger is more interesting than pleasure, you will tend to bring up things that appear to be dangerous. It will catch people's attention, and primate social structure is very strongly conditioned by who has the troop's attention.

      SETI is relatively unrelated to climate change, so most files to do with climate change are many links away, and the average person just does not have the mental capability of seeing any association between the two at all. An exceptional person might.

      You have to remember: we are trying to think logically with a bundle of nerves that was primarily evolved for us to be able to avoid predators, find food, have sex, and rear young, and the means of doing all those things was to fit into the social heirarchy of a bunch of monkeys. Given that, we should probably be thankful we can think at all rather than annoyed that we think so badly.

      --
      Blasphemy is a human right. Blasphemophobia kills.
    3. Re:Why is it... by JanneM · · Score: 1

      I do notice they are not mentioning anywhere what form the use of any discoveries will take. I have little desire to volonteer my time and cycles without compensation to an effort that ultimately just ends up as another set of restrictive medical patents.

      --
      Trust the Computer. The Computer is your friend.
    4. Re:Why is it... by dustmite · · Score: 1

      There is no logic ... the problem is that people are simply not taught by our education system how to think or how to reason.

  15. Team slashdot by hhappy · · Score: 1

    Help make the slashdot team the biggest team on the planet. Watch the team progress grow. You know you need to.

  16. Just server overload -- try later by JavaRob · · Score: 1

    This is discussed in their help section on the site. I'm getting the same thing no matter what email I enter, including ones I can guarantee have not been signed up. [I also signed up for the discussion boards on the site, but the confirmation email hasn't come yet... and it's been about 1/2 hour.]

    Apparently that's just the response you get when the servers are overloaded and can't process the registration.

    Just close it and try later.

  17. Amusingly, they're calling me for BBC talkback by WillAffleckUW · · Score: 1

    this Sunday at oh dark 30 (ok, 5:30 am PST, but I like to sleep in until 10 or 11 am) on this very subject.

    Global Warming - it's a really hot issue at the Beeb.

    Plus, as a bonus, it has absolutely nothing to do with certain cartoon riots, and they get to avoid talking about the whole smoking ban that's also causing ill feelings.

    That, plus the fact that Seattle is famous worldwide as Green central for US cities (hey, I know it's not true, we killed the monorail and all that, plus we drive a lot, but they actually believe the spin we put out).

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  18. Record-breaking climate change? by DiamondGeezer · · Score: 1

    Maybe they're going to try and top 11C warming that they managed last time.

    It should be "How I bombed the atmosphere with carbon dioxide and waited for the headlines"

    --
    Tubby or not tubby. Fat is the question
    1. Re:Record-breaking climate change? by Anonymous Coward · · Score: 0

      If you believe climate audit you must be very gullable.

  19. Answers to some comments by Anonymous Coward · · Score: 4, Informative

    In a long term ClimatePrediction.net user let me answer a few questions:

    1. the extra electricity used is insignificant in global terms. In winter the extra heat generated means you don't need to keep your central heating so high. Super-computers use lots of electricity themselves so running these same simulations on one (actually would take dozens) would not be better.

    2. We are currently at just under 50,000 users, sounds a lot but there are millions of potential models to crunch - although useful science can be done with a smaller number. I would expect over 100,000 users to enrole in total. Some users are experiencing problems, they seem a very small percentage of the total judging by the posts on the help lines. Many of the problems are due to trying to run it one machines not powerful enough, climate simulations are heavy duty programs and need a beefy machine to run in a reasonable time.

    3. The exeriment is an 80 year hindcast + 80 year forecast 1920-2080, even if a model does not complete the hindcast will be useful. The second BBC program is scheduled for May which is the "end" of the project, in pratice the scientists will be able to use results reported for at least a year after than. Its the science that counts.

    4. The data is not being hoarded by the BBC, it is kept by the ClimatePrediction.net team, and is available to scientist throughout the world.

    5. in a few days the ClimatePrediction.net servers will start dishing out TCM models to their users, that will add another 45,000 odd machines.

    6. ClimatePrediction.net is in the midst of a sulphur cycle experiment, which compelements the 2x CO2 doubling and THC slowdown experients. There is at least one other experiment in beta.

    7. ClimatePrediction.net has already had one major paper in Nature, as well as many others, this is the distributed project that seems to producing the best science.

  20. Re: Doesn't matter... by fyngyrz · · Score: 0, Flamebait
    ...anyway; we can't possibly predict climate without taking technological changes into account, and we can't do that at all.

    Technology is the single biggest human factor that we have reason to believe affects climate; it is the primary whipping boy for the "we're killing our planet" hysterics, after all, yet none of these "studies" can even make a start at predicting what is going to be the motive and/or non-motive power technology set du jour in twenty, fifty, two hundred years. Although we do know that it almost certainly won't be oil, because there won't be enough left to use economically for such purposes. Both power transport/storage and method of generation are questions that are totally up in the air. For generation, fusion? Fission? Solar? Tidal? Trans-dimensional down-level leakage? Other? For storage and transport, hydrogen? Ultrabatteries? Other? We have absolutely no idea. What about transport efficiency? Will friction continue to be an energy sink? Maglev? Vacuum containers? Anti-bloody-gravity?

    And then there are issues like volcanic activity, solar activity, the Earth's magnetic field is weakening...

    Predicting climate without knowing what all these major inputs to the system are going to do is like trying to predict the weather without wind, humidity and temperature information. A random number generator would likely do as well.

    The whole thing is an exercise in naval gazing and cynical grant-acquisition.

    Of course, it does make a great distraction from the real issues of the day such as multi-national erosion of civil rights, the United States' current attempt to inflict an empire of democracy upon nations that are operating under other systems, starvation in large portions of Africa...

    How... convenient.

    --
    I've fallen off your lawn, and I can't get up.
  21. How secure are these distributed schemes? by Peter+Trepan · · Score: 1

    Suppose the Republican Party graciously donates the spare cycles of all the computers at its headquarters, and the results magically turn out to mesh with their official line that there's no such thing as global warming?

    --

    Step into a huge movement. Don't Tread In Me.

  22. MOD parent UP: useful link to Oxford version by WillAffleckUW · · Score: 1

    thanks for the link!

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  23. Re:outsourcing, or why I learned to Fold Proteins by WillAffleckUW · · Score: 1

    I am concerned about sending my spare CPU time overseas, i mean, they say they are "climate modeling", but could they not just as easily be selling this "distributed" computer network to the black market, or Iran, or doing nuclear weapons simulations?

    You could always donate your CPU cycles to help Fold Proteins at the Baker Lab here at the University of Washington.

    Then you'd know your CPU cycles were doing good American scientific research.

    And Prof. Baker is a neat guy, very slashdot.

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  24. Re:Why is it... here is the link to help by WillAffleckUW · · Score: 1

    Sorry, here's the Baker Lab link, for the Biochemical Structure prediction effort, folding proteins with your home computer. They also have another Beta for a different project as well.

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  25. Re: How to Avoid Restrictive Medical Patents by WillAffleckUW · · Score: 1

    While you have a good point, in that it might be used for restrictive medical patents, as a Bioinformatician I've actually used some of their genetic libraries for pattern matching as part of open scientific research funded by NIH, NIAID, and now NIA.

    So, since the BBC is just the front for a great scientific college, I'd be ok with that.

    You could always help out the Baker Labs here at the University of Washington, folding proteins with your spare CPU cycles. The protein folding is for various projects worldwide, the vast majority of which are all public research, and hence not used for restrictive patents.

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  26. Re: How to Avoid Restrictive Medical Patents by JanneM · · Score: 1

    It was the "Baker Labs" thing I was referring to; I went on a look-around on the website, but nowhere could I find addressed who was going to own the results, or in what form they were going to be made available. And "Public research" is of course not a guarantee that the results will actually be avaiable on a royalty-free or similar basis.

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    Trust the Computer. The Computer is your friend.
  27. Re: How to Avoid Restrictive Medical Patents by WillAffleckUW · · Score: 1

    I agree, there is no guarantee.

    I can, however, as someone who worked on the same floor as the Baker Labs - they're in J wing, I was in K-wing, and David Baker's been at many Biochem seminars that I've been to, attest that the vast and overwhelming (something like 90+ percent) of Protein Structures developed by Folding Predictions are for other open research, usually funded by NIH, NIAID, and various equivalent groups in places like the UK, where the research is published in Science or Nature or Cell and they're not used for restrictive patents.

    Is that helpful?

    I'm now over by Lake Union, but my girlfriend works one floor down from the Baker Labs at the UW, so I can attest it's pretty above-board.

    Will, formerly of Biochemistry, now of Medical Genetics (Dept of Medicine)

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  28. Re: FLAMEBAIT??? by fyngyrz · · Score: 0, Flamebait
    I'm not the least bit concerned with the moderation as the implied comment the moderator made with it; that wasn't flamebait, it was bloody fact is what it was. You cannot, repeat CANNOT, predict climate in any even vaguely accurate manner without those inputs. Clearly, the moderator who marked that post flamebait doesn't understand simulation OR science. Not to mention was too much of a know-nothing to try and contest the actual point I was making.

    Anyone who thinks you can create a predictive simulation without critical data that is KNOWN to modify the situation needs their head examined.

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    I've fallen off your lawn, and I can't get up.
  29. Re: How to Avoid Restrictive Medical Patents by JanneM · · Score: 1

    I'm now over by Lake Union, but my girlfriend works one floor down from the Baker Labs at the UW, so I can attest it's pretty above-board.

    Don't get me wrong; I'm sure it is above board, and from all I see it's good people running the place.

    But this is rather like the issue of software licensing. You can have a great group of people doing wonderful work, and you know they will share the work right back with the community. But people do leave or get replaced, companies get bought up and so on and so forth. We've seen people's contributions disappear into commercial black holes before when the work was done under the "trust us" model (the CDDB database is perhaps the most widespread example). The lab may be a wonderful place, but they do not - for example - have control over UW:s policy on research results, and if they determine that all results must be fully commercialized there is probably not a whole lot the lab can do. I'm really not comfortable with things like this not being spelled out in writing.

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    Trust the Computer. The Computer is your friend.
  30. Re: How to Avoid Restrictive Medical Patents by WillAffleckUW · · Score: 1

    Don't get me wrong; I'm sure it is above board, and from all I see it's good people running the place.

    But this is rather like the issue of software licensing. You can have a great group of people doing wonderful work, and you know they will share the work right back with the community.


    True, but in the end we come back to the scientific dilemma of sharing code (open source) and information (public research science).

    Anyone can file a patent, but it's a lot harder to do so if there's prior art - and when you help an open project like what the Baker Lab does, there's a much greater chance that that will create prior art, and hence not lead to restrictive patents.

    David's a nice guy. He runs a good lab, and they do good work that a lot of other good scientists use, but I can't guarantee anything since he's not me.

    But, on the other hand, you could just send him an email or phone him, he's in the online directory of staff, students, and faculty. Just look up David Baker and send him an email or click on the entry and get his full mailing address, UW mail stop, and phone/fax - I'm sure he'd be glad to answer questions directly (naturally, since he's the PI of the Lab, and has a teaching load of a Professor as well, ...).

    Maybe he can clarify it further.

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  31. Re: How to Avoid Restrictive Medical Patents by JanneM · · Score: 1

    Anyone can file a patent, but it's a lot harder to do so if there's prior art - and when you help an open project like what the Baker Lab does, there's a much greater chance that that will create prior art, and hence not lead to restrictive patents.

    David's a nice guy. He runs a good lab, and they do good work that a lot of other good scientists use, but I can't guarantee anything since he's not me.


    I think we may be talking past each other a bit here. Again, I have no doubts about him or his lab; that's not what worries me. In fact, it looks like just the kind of place I'd want to work in. To put it this way, even if you were he - even if I were he - I would still not trust this fully. He (you|me) is not in control of what his superiors may get into their heads to do if the project turns up something that is economically hugely valuable.

    The best way to dispel any such nagging doubts is to spell it out, in a binding document, what the project may or may not do with the results of peoples' contributions (and I'm not necessarily asking for some hugely liberal, "anyone can do anything" kind of license eiter; just that whatever will be allowed is spelled out).

    There's plenty of worthy projects out there, and choosing between them, the lack of a formal statement is just the kind of thing that would make me look for something else. Just like for software, in fact.

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    Trust the Computer. The Computer is your friend.
  32. Re: FLAMEBAIT??? by TapeCutter · · Score: 1

    "The whole thing is an exercise in naval gazing and cynical grant-acquisition."

    You may have faired better had you bothered to find out how the model currently caters for the things that you are complianing about and what it is they are hoping to achive with the experiment.

    Calling internationally respected scientists cynical money grubbers based on your own false and myopic assumptions is definitely flamebait and I applaud the moderator for their good judgment.

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    And did you exchange a walk on part in the war for a lead role in a cage? - Pink Floyd.
  33. Re: FLAMEBAIT??? by fyngyrz · · Score: 1
    You may have faired better had you bothered to find out how the model currently caters for the things that you are complianing about

    So, Sparky, you think the BBC and its co-modelers know what technological changes are coming. What energy sources will be in use. When this will happen. When the next change comes. Etc. And you are assuming all of this is plugged into the model, apparently. You think I should check to see if the modelers have "properly" predicted the future of all energy technologies and incorporated that information before I dare put forward any critique of the lordly and all-knowing, future-predicting, BBC's master plan for ten thousand plus computers.

    You're actually right on one thing. I should never have said anything. There's rarely any point in bringing sensible commentary to a discussion that is dominated by hysteria and ignorance — as you clearly demonstrate.

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    I've fallen off your lawn, and I can't get up.
  34. Re: FLAMEBAIT??? by TapeCutter · · Score: 1

    The only hysterical (both meanings) one is you. For a start the BBC is pushing the experiment not designing it.

    The UK MET office models make various assumptions about the effect of future tech on CO2 output, particulates, volcanic activity and a gazillion other things that you would not understand. The models make predictions on both past and future climate using a massive number of senarios with different inputs for the variables you speak about. The models themselves are not that difficult to research, there is a wealth of peer reviewed material on the web that looks at the MET models in particular, not to mention the same techniques are used in many other areas of research that have nothing to do with climate.

    From the very start you poo-poo the whole thing without having a clue what it is about and then complain at being modded down. Either come up with an informed critisim or put up with the justifyable moderation, you can't have both.

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    And did you exchange a walk on part in the war for a lead role in a cage? - Pink Floyd.
  35. Re: How to Avoid Restrictive Medical Patents by WillAffleckUW · · Score: 1

    I think we may be talking past each other a bit here. Again, I have no doubts about him or his lab; that's not what worries me. In fact, it looks like just the kind of place I'd want to work in. To put it this way, even if you were he - even if I were he - I would still not trust this fully. He (you|me) is not in control of what his superiors may get into their heads to do if the project turns up something that is economically hugely valuable.


    True, but actually his lab provides Protein Folding prediction software to other research projects, so he has even less ability to stop people from using it for nefarious (patent) purposes. Anyone can submit their data to the lab and get predictions from it, and that's the beauty of it, it's open.

    It's your call if you wish to participate. I can only tell you what percentage of submitted works are for public research (non-patentable, since they become public), there's no real control over who uses it.

    At some point you have to trust that science will be used for good by most scientists - sure, there are unethical or profit-driven scientists, but they're a minority in my experience.

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  36. Hardly. by fyngyrz · · Score: 1
    Utter nonsense. First of all, you have no idea what I am able to understand. You don't know me. Secondly, you assume I don't have a clue, but that is because you choose to hurl imprecations rather than address the point I raise (of course, you probably can't address the point I raised, no one seems to be abel to, and that is my point.)

    Finally, covering a "range" of factors means that the output of the simulation covers a *range* of outputs, but it still does not mean that the simulation predicts what technologies will be in use. "A range" does not equal actuality. It's just a subset of possibilities, not a one of which can be assured to come to pass and where the entire set is no more likely to contain the actual set of circumsstances than anything made up by an 11-year old Trekkie.

    The bottom line is that you can posit as complex a simulation as you like, but if you leave out major influences, you're just hand-waving. And there can be no question that major influences are being left out.

    Why? Because there is a huge range of new possibilities and paths opened up by every new energy technology, every new measurement technology, every new transportation technology, every new waste disposal technology, every new recycling technology, every new genetic advance, every additional level of understanding gained in chemistry and physics, the sudden appearance of AI could change *everything* from who is working to how work is done... the list here is literally endless and any of it will knock these models not just askew, but completely out of any possible realm of applicability. And not just because of the individual changes, but because these change interact. They do so in ways that cannot be simulated or predicted; For instance an unanticipated advance in recycling energy may affect power production in a major way. Or not. Likewise energy storage efficiency. An unanticipated advance in genetics may change how livestock passes gas. An unanticipated change in public sentiment towards genetic manipulation may cause such an advance to have no effect.

    Now, I fully expect you to come back with another "YOU'RE AN IDIOT" but if by chance you elect to engage your brain instead of your innate sense of disdain when someone says something you aren't happy with, I'll be happy to address any real points you might have buried inside your preconceptions.

    Otherwise, have a nice day, and enjoy your delusions.

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    I've fallen off your lawn, and I can't get up.
  37. The fairy godmother by TapeCutter · · Score: 1

    The fairy godmother is unreliable and inherently unpredictable.

    From a civil engineering point of view you can only make rational predictions using non-existant infrastructure. Making predictions with non-existant technology is called science fiction, it's more comforting and definitely more readable, but it's still fiction.

    BTW: The point you are trying to make is philosophical one, it is neither scientific or pragamtic in any meaningfull way. Science is based on the assumption (faith) the Universe is predictable. Pragmatisim says that "the followers of perfection are the enemies of good". The philosphy you describe is blind optimisim, but hey, if you really are a misunderstood /. genius, quit bragging about your brain and invent something usefull to put in the models.

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    And did you exchange a walk on part in the war for a lead role in a cage? - Pink Floyd.
  38. Careful with that axe, Eugene. by fyngyrz · · Score: 1
    Making predictions with non-existant technology is called science fiction, it's more comforting and definitely more readable, but it's still fiction.

    Yes, that's exactly my point. The predictions made by these long-term climate simulations are almost certainly nonsense (barring luck) because they are presuming a particular infrastructure, and that presumption is, just as you say, science fiction.

    Your outlook, the presumption that since you don't know something (the actual state of technology during the simulation), you can ignore it and use what you presume to be the case... that is utter nonsense.

    Even small changes affect complex systems. Weather prediction has shown us that very, very clearly. We can't even predict temperature even 24 hours in advance without a significant margin of error. Climate is a far more complex system.

    If you leave major effects out of any long term simulation of climate, you might as well be having a beer instead for all the good your simulation will do for you.

    I'll leave you with that thought.

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    I've fallen off your lawn, and I can't get up.
    1. Re:Careful with that axe, Eugene. by TapeCutter · · Score: 1

      "Yes, that's exactly my point."

      You have missunderstood me, again.

      "Even small changes affect complex systems. Weather prediction has shown us that very, very clearly. We can't even predict temperature even 24 hours in advance without a significant margin of error. Climate is a far more complex system."

      You have also missunderstood the term "climate". ie: The long term statistics of weather. You cannot predict where an idividual steam bubble will form in a pot of simmering water but you can certainly predict when the pot will boil.

      "Your outlook, the presumption that since you don't know something (the actual state of technology during the simulation), you can ignore it and use what you presume to be the case... that is utter nonsense."

      You also misunderstand the scientific method, ie: Every scientific theory is based on assumptions.

      I'll leave you with this thought. Why is it that only climate science and evolutionary science suffer from people who "know better than the experts". Why don't you critisize the simulation that was used to design the mold for your engine block or the wings of a passenger jet. After all they too are "complex systems" simulated with FEA and use plenty of assumptions and statistics to keep you in the air or on the freeway.

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      And did you exchange a walk on part in the war for a lead role in a cage? - Pink Floyd.
    2. Re:Careful with that axe, Eugene. by fyngyrz · · Score: 1

      You have missunderstood me, again.

      No, I didn't misunderstand you at all. I was simply pointing out (with some amusement, I admit) that your reasoning applies to the problem, once you realize that the inputs to climate simulation contain science fiction — specifically innaccurate technology information. I realize you have an emotional stake in this and can't look at it dispassionately, but that doesn't make the point invalid. You're feeding the simulation garbage; you're going to get garbage results back. That is the science you are missing. Simulations can only work as well as the data set they have to work with allows them to.

      You have also missunderstood the term "climate". ie: The long term statistics of weather. You cannot predict where an idividual steam bubble will form in a pot of simmering water but you can certainly predict when the pot will boil.

      Here, you are attempting to compare a situation where only a few inputs (the material being heated, it's volume, atmospheric pressure, heat applied, heat lost through radiation and evaporation) allows prediction, and a situation where we do not have the data needed to make a prediction, specifically, climate.

      Details? Sure: Technology will affect climate. It's a given. The current proponents of human-caused climate change spend the vast majority of their time pointing the finger at what? At technology. It ought to seem pretty silly to you that you are willing to discount technology as a factor in any climate simulation, when technology is the primary villian in your scenario, indeed, the very reason that these simulations have been launched.

      Climate is not a simple thing to predict. Particularly now. You're not going to predict it using simulations that leave out critical data. Neither is anyone else, no matter how impressive their reputations or sponsorship might seem to be. Comparing it to a boiling pot of water is invalid.

      If, as proponents of human caused climate change assert, technology is such an important factor that it is affecting climate (and I agree that it is), then to attempt to simulate future climate change without being able to account for technology within the operation of the simulation is downright absurd.

      Going back to your pot of boiling water example, we know all of the factors that affect this. We know what factors will not (e.g., your vehicle's tires have a specific coefficient of friction which may vary enormously, but no matter what that value is, we know it does not affect water boiling on your home stove.) That's what makes it easy to predict how a pot of water will behave in this situation. The problem is a simple one with entirely known inputs.

      With regard to climate, we know how climate has behaved in the past to a reasonable degree of certainty, but we cannot apply that experience to today and/or the future, because there are new factors that are known to be affecting climate that have arisen and because those factors consist in and of themselves of a series of changing inputs — technology-centric energy production, energy storage, and energy use.

      No such factors exist that would affect your pot of water. We can safely predict that your pot of water will boil 1000 years from now just as it will today, affected in the very same way by the very same factors. We cannot make such a prediction for climate behavior because unlike your teapot, the surrounding conditions are not simple, not independent of external influences, and bluntly, completely uncertain at the point we would most wish to evaluate the outcome.

      It's as if you said, ok, lets predict the boiling time of the teapot, but we'll take the air pressure to be a random number. If you do that, you're going to get nonsense results. Well, if you attempt to predict climate but feed in some imaginary trash as to energy production, storage and use, you're going to get a similar

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    3. Re:Careful with that axe, Eugene. by TapeCutter · · Score: 1

      Wow that is one huge essay, pity you still miss the point that you cannot in any reasonable prediction insist on perfect input and assumptions. I won't answer the whole thing but this bit, "and never have tested in the past (because the current situation never existed in the past)", is patently false and shows you are simply attacking the models on assumptions you have pulled out of your arse. If you are certain that I am wrong and the models are in fact useless then submit your theories to Nature or IPCC, I'm sick of banging my head against your nonsense.

      PS: Tommorows weather is simpler to predict than the location of a steam bubble in a pot as is evidenced by the evening news.

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      And did you exchange a walk on part in the war for a lead role in a cage? - Pink Floyd.
  39. Oh, you're just grooving with the Pict, I see. by fyngyrz · · Score: 1
    Wow that is one huge essay, pity you still miss the point that you cannot in any reasonable prediction insist on perfect input and assumptions.

    Pardon me, my mistake. I thought, since you were attacking my knowledge of simulation with such gusto, that you actually knew how simulations worked. Now that you have shown you don't, I won't worry about your opinion any longer.

    You have a good day!

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    1. Re:Oh, you're just grooving with the Pict, I see. by Bush+Pig · · Score: 1

      Plonker.

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  40. Another brick in the wall by fyngyrz · · Score: 1
    Not content with having Tapecutter beat me up with superior knowledge of simulations, further cogent argument rears its head from the slashdot intelligentsia, going directly for the topical kill.

    I truly admire the way you took the point I was making and using critical thinking, scientific method, and relevant examples, just tore my position apart. No question, a beautiful job. You are such a stud. The "simulate with trash data then treat the results as gospel" crowd is so lucky to have you on their side, sir.

    Um, I find your ideas fascinating and would like to subscribe to your newsletter.

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    I've fallen off your lawn, and I can't get up.