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Study Explains Evolution's Molecular Advance

pnewhook writes "The New York Times is reporting that 'by reconstructing ancient genes from long-extinct animals, scientists have for the first time demonstrated the step-by-step progression of how evolution created a new piece of molecular machinery by reusing and modifying existing parts. The researchers say the findings, published today in the journal Science, offer a counterargument to doubters of evolution who question how a progression of small changes could produce the intricate mechanisms found in living cells.'"

11 of 477 comments (clear)

  1. Matter of time by Transcendent · · Score: 5, Insightful

    It was only a matter of time before scientists discovered the steps and had enough knowledge to connect the dots.

    Frankly, I'm glad they're finding more and more of how biology works. I don't want to get into a creationist debate, but it has always astounded me that people would argue that life is too complex for it to have been made "naturally" and that a higher being must have helped along the way. But, by saying that, they're saying that God is not powerful enough to create such a universe in which evolution can happen, that a universe created by God could not possibly work by itself.

    How dare they...

    1. Re:Matter of time by dsanfte · · Score: 5, Interesting

      It's also immensely disrespectful to our ancestors of well over a million years' span, to deny their existence because it just might, maybe rock the boat a little.

      How many thousands of generations of people lived and died over the millennia so that we might be where we are today? And some would deny their very existence. Shame on you!

      --
      occultae nullus est respectus musicae - originally a Greek proverb
    2. Re:Matter of time by shawb · · Score: 5, Interesting

      To be fair, evolution does not disprove of A god...

      But it does kinda reduce the likelihood that there is a PERSONAL god who is intimately concerned with all of our activities, and so is a reason to behave in a moral way and more importantly, to then worship that god and tithe to the church who claims to be the bridge between man and god.

      (Note, I was not saying that atheists are not moral with the "is a reason to behave..." line, but for some people the existance of a personal god is one of the reasons to behave in a moral manner.)

      --
      I'll never make that mistake again, reading the experts' opinions. - Feynman
    3. Re:Matter of time by plunge · · Score: 5, Insightful

      Not at all. I'm an atheist, but I welcome imaginative, honest theist thinkers like biologist Kenneth Miller who feel that, if anything, evolution BETTER fits this theology than the reverse. A universe in which God allows to develop on its own, and then reaches out PERSONALLY to sentient creatures (and even performs miracles as part of this reaching out) is far more "free" than one in which God is constantly micro-managing.

      Now, I don't believe in God, but I bear no grudges against those who do, and as long as a belief doesn't involve scientific claims or attacking good science with falsehoods, but I applaud those who are taking their beliefs forward and refining them to make them more honest rather than simply defending dogma. If there were a God, the only kind I can possibly imagine would reward the former, not the latter.

    4. Re:Matter of time by geeber · · Score: 5, Interesting

      To be fair, evolution does not disprove of A god...

      But it does kinda reduce the likelihood that there is a PERSONAL god who is intimately concerned with all of our activities, and so is a reason to behave in a moral way and more importantly, to then worship that god and tithe to the church who claims to be the bridge between man and god.


      Personally, I feel like events such as hurricane Katrina, the tsunami in the indian ocean, and September 11th offer a much stronger proof of the lack of a personal god.

      Interestingly, other people look at the same events and come to the exact opposite conclusion.

      Wierd, no?

    5. Re:Matter of time by Daniel+Dvorkin · · Score: 5, Insightful

      Another is to point out evolution's flaws (something evolutionists get very testy about, btw. They don't like their faith questioned anymore than religious people do)

      This is simply not true. Evolutionary biologists find flaws in existing theories of evolution fairly often, and the theories are adjusted accordingly over time. This is simply how all science, including biology, works; there is no crisis of faith as you claim.

      --
      The correlation between ignorance of statistics and using "correlation is not causation" as an argument is close to 1.
    6. Re:Matter of time by plunge · · Score: 5, Interesting

      That was actually the subject of this great, award winning blog post on Pharyngula:

      "The proper reverence due those who have gone before"
      http://scienceblogs.com/pharyngula/2006/01/the_pro per_reverence_due_those.php

    7. Re:Matter of time by monoqlith · · Score: 5, Informative

      Sorry to nitpick, but quantum "fluctuations" are not random. People often confuse the terms "random" and "probabilistic" when they talk about quantum physics. A "random" system is a system where any outcome of measurement is just as likely as any other outcome. However, quantum particles are more likely to be at the expectation value of position than at any other place, though there is a NON-zero probability of it being anywhere else in the system. So quantum "fluctuations"(I'm not sure what you mean by this) are NOT random, because some outcomes of measurement are vastly more likely than others. The only requirement for a quantum particle is that the probability of it being SOMEWHERE is 1.

      Quantum particles are associated with probability WAVES that fluctuate with time. When we say wave-particle duality we mean that the particle does NOT have a definite classical trajectory but instead a WAVE of probability associated with it that describes the positions, energies, and momentums at which the particle is most likely to be. This is called a wave function; it is a solution to Schrodinger's differential wave equation and its square is a probability curve.

      Depending on your interpretation, quantum mechanics does indicate some things about reality such as there is an ONTOLOGICAL limit on what we can know for certain about objective reality such that it appears meaningless to talk about an absolute objective reality at all. That is, reality changes by being observed. However, unlike general relativity which does indeed EXPLAIN gravity by saying that gravity is identical with a curved space-time geometry, you are quite right in saying that quantum mechanics does not explain anything. Nor does particle theory or E&M explain why there are electric and magnetic forces without beginning to conjure up force-carrying particles and the like. They are currently trying to explain all these things by means of string theory.

  2. Re:God created everything... by Fulcrum+of+Evil · · Score: 5, Insightful

    There is nothing without God.

    This is a science discussion - proselytizing has no place here.

    --
    "We returned the General to El Salvador, or maybe Guatemala, it's difficult to tell from 10,000 feet"
  3. ID already mathematically incoherent by plunge · · Score: 5, Interesting

    It's worth noting that most mathematicians already think ideas like Irreducible Complexity and Complex Specified Information are a load of hooey, despite the appeals people like Dembski and Behe make to having made innovative breakthroughs in these areas:

    One good blog on this subject I've found is Good Math, Bad Math, and some posts relevant to this topic are:

    -CSI is basically incoherent: if you translate the definition of CSI into non-obscure words, it essentially boils down to either "something that contains a lot of information, but doesn't contain a lot of information" or a definition for which EVERY piece of information is specified:
    http://goodmath.blogspot.com/2006/04/one-last-stab -at-dembski-vacuousness.html

    -IC, when translated into math, makes no sense. We can actually PROVE in math that there is no general proof that some system is the simplest possible (which IC requires), much like we can prove that we can never solve the halting problem.
    http://goodmath.blogspot.com/2006/03/problem-with- irreducible-complexity.html

    -Even if they did make sense, CSI and IC basically conflict with each other, arguing contradictory things:
    http://goodmath.blogspot.com/2006/03/conflict-betw een-ic-and-it-arguments.html

  4. Not going to dissuade the intelligent designers by mcc · · Score: 5, Insightful
    A bit of context, for the record:

    The reason the NYT is giving this the "doubters of evolution" spin is that there's this guy, Michael Behe, who wrote a book around 1995 somewhere called "Darwin's Black Box". The central idea of that book was the allegation that evolutionary science treats the cell like a "black box" that nobody attempts to look inside or explain. Evolutionary science, said Behe, only concerns itself with larger structures, and only assumes the stuff inside the cell "just works". Because evolution can't explain, subcellular structures, evolution lacks a foundation, is built on nothing, and is wrong.

    This is, of course, silly if you're actually familiar with the science, because to whatever extent scienists ever treated the cell like a "black box", it was because we didn't know how to look inside yet. Viewing machinery the size of a molecule is really hard. Scientists could analyze things, but have only relatively recently gained the ability to view the full picture of things, much as they might have wanted to.

    Once the technology for understanding the molecular structures that make up cells really started to take off (say, at the beginning of the 80s-ish), a revolution of sorts started in microbiology and genetics. And as this happened, Behe managed to exploit a neat trick of timing; he wrote his book just as a lot of fascinating questions were appearing through this revolution in microbiology, but before (since the questions had only just been asked) we really knew what the answers were. Behe was able to craft the illusion, since we didn't know the answers to some of those questions yet, that the questions didn't have answers or would never be answered and thus evolution was flawed-- not mentioning that work was underway or even partially completed to find answers to all of these questions. In the time since Behe wrote his book, cell microbiology has progressed by leaps and bounds, but the book itself is able to do a neat little job of making it seem like the cell really is just an inexplicable black box, because he wrote it just as science totally finished picking the lock.

    Which brings us to this story: The one scientific "big idea" in Darwin's Black Box was what Behe calls "Irreducible Complexity", and the publication of Darwin's Black Box was the main way this idea was popularized. The idea behind irreducible complexity is that there exist structures that contain one or more parts, and that if you remove one of the parts, the entire thing stops working. But one would expect that evolutionary mutation can only change "one thing" at a time; the idea that a single new allele that could simultaneously create two separable and interlocking structures seems wholly unbelievable. So how did irreducibly complex structures evolve?

    This is an extremely reasonable question, and one evolutionary science is obligated to answer. The problem is that Behe, and the rest of the ID crowd:
    1. Instead of asking the question, "how did irreducibly complex structures evolve?", skipped the question and immediately jumped to the conclusion "it is impossible for irreducibly complex structures to evolve".
    2. Even after answers to the question saying "this is an explanation of how irreducibly complex structures can evolve" were provided again, and again, and again, kept doggedly insisting "it is impossible for irreducibly complex structures to evolve".

    The answer to how irreducibly complex structures could evolve is pretty simple: all that would have to happen is for a structure to change its purpose over time. That is to say, it doesn't matter that irreducibly complex structures can only evolve one part at a time, because it is simple to imagine each of the small structures in an irreducibly complex system independently evolving for some other purpose than the big IC system performs, then being adapted into a bigger IC system with rube goldberg style ingenuity, then gradually losing the ability to function for their original purpose indepen