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Femtosecond Laser Shatters Viruses
wattrlz writes "In a development reminiscent of nineteenth century pseudo-science, the father-son team of Kong Thon and Shaw Wei Tsen recently demonstrated that the tobacco mosaic virus can be destroyed in vitro by nano-scale mechanical resonant vibrations induced by repeated ultra-short pulses from a laser. The total energy required is reportedly far below the threshold for human tissue damage and the technique should generalize to human pathogens. Cleaning stored blood is one obvious application."
Do not look into the femtosecond laser with your remaining Capsid.
(and you thought I was gonna say eye...)
liqbase
This is (more or less) just some people who do a lot of Raman scattering deciding to try their technique to analyze virus particles and then noticing that some of them were damaged in the process. All of the other stuff (in particular the HIV) is largely BS - a few physicists who know almost nothing about biology going after NIH money by putting the magic "HIV" buzzword into their grant applications.
The slightly cool thing about it is that you can target particles below a certain size (like viruses) without causing much damage to larger particles (like host cells).
In terms of actually engineering this into a system for filtering blood (one of the main applications they envision), there are enough problems that it has no hope of succeeding in practice. Even if you could actually overcome all of those and build a system that could use this technique to destroy all of the virus particles in blood on a practical scale, many viruses that could contaminate whole blood (including HIV) will have uncoated and set up shop in the white cells, which would go on to release new virus after the treatment so this would offer no protection at all.
For the same reason, you couldn't use this as a treatment even if you could somehow expose every cell in a patient to these pulses (which would be impossible unless you cut them into paper-thin slices).
If the Tsens are actually unaware of this, then that alone should raise a huge red flag because anyone with the slightest bit of background in virology would know this.
About the only thing this *might* be good for (other than generating press and bilking naive investors out of their money) is as a laboratory technique for killing all of the free virus in a very small sample without harming the cells.
As a scientist, this kind of thing makes me sick, and it illustrates some of the harm caused by profit-motivated research in university settings (in particular, things Arizona State University's Biodesign Institute).
It's great when science and discovery naturally leads to practical (and profitable) products, but this kind of thing is what happens when people put the goal of making money ahead of actually doing real science.
Having read TFA, I still worry.
1. All proteins in your body, and all proteins your body can possibly assemble for a virus capsid (and it must, because that's how virii multiply) are made of the same 20 aminoacids. The result, however, can range from relatively simple enzymes to gigantic mollecules, and they're folded in lots of funny ways too, to work like they're supposed to.
I.e., I wouldn't be _too_ surprised if for _some_ particular frequencies (i.e., some very narrowly defined types of virii), something else in your cells had a resonance on the same frequency. Even if the total power isn't enough to vapourize a cell, it could still be pretty deadly.
2. A capsid isn't a monolythic thing, it's made of several proteins which assemble themselves in that shape. That's how your body produces more capsids for the viruses an infected cell manufactures. It produces the capsid pieces, and those then assemble themselves around the pieces of viral DNA or RNA that were copied too.
So I'm curious exactly in what way are the capsids "shattered" by that resonance. If it shatters the proteins themselves into aminoacids, yeah, that's the end of it. But then, see point 1, I'd worry which other proteins it can destroy like that. If it just shatters the (relatively) weaker bonds between the individual proteins that make the capsid, I would imagine that at least some of them will simply reassemble. Remember they're proteins which are pretty much built to do just that: connect to each other and form a capsid.
3. Their claim that it can shatter HIV virii, while leaving the T cells intact, seems somewhat missing the point. It's the kind of solution that a physicist would imagine, if he doesn't know much about how a virus works.
So let's get a bit into (a very over-simplified summary of) how a cell works, and a virus multiplies. (Warning: it's still a long read.)
Your cells are basically a chemical computer whose function include building more building blocks for itself, or for more copies of itself. Your proteins, for example, are encoded by your DNA, as triplets of nucleotides. One such triplet is a "codon", and it identifies one aminoacid. (With some redundancy. You use 20 aminoacids, but since there are 4 possible nucleotides and there are 3 of them, there are 64 possible combinations. So it's quite usual that 2 or 3 different combinations mean the same aminoacid.)
When a cell needs more of a certain protein, it first copies a segment of DNA to RNA and lets it loose. Each Then a ribosome reads that just like a piece of tape, one codon (group of 3 nucleotids) at a time, and assembles a chain of aminoacids matching that sequence. For each codon, it adds the matching aminoacid to the chain, and moves one position further. One codon means STOP, and when it reached that, it lets go of the newly built protein and stops.
A virus works much the same. It builds more capsids, for example, by just letting loose a chain of RNA in your cell, which contains the information on how to build a capsid piece. (If it's a DNA based virus, it will first have to transcribe it to RNA, same as your cell does.) When enough of those capsid pieces have been built, they assemble themselves in a capsid around such a RNA chain.
At the same time, of course, the virus will also have to get your cell to transcribe the RNA piece. That, however, is just a sub-case of the previous paragraph. One of the proteins encoded by the virus, is the "RNA replicase". It's an enzyme which copies RNA strands. So the virus will let one piece of tape with that information loose inside your cell, the cell transcribes it to RNA replicase, which in turn starts copying RNA strands non-stop. Some will be surrounded by the capsid pieces to form new virii, but some will just keep getting interpreted by your ribosomes, so the cell keeps producing more capsid pieces and more RNA transcriptase.
To sum it up, an infected cell is, essentially, reprogrammed to keep producing viruses until it bursts. It's those pieces of gene
A polar bear is a cartesian bear after a coordinate transform.