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Organism Closest To Original "Tree of Life" Discovered

An anonymous reader writes "Scientists have discovered a benign algae eating protozoan in a lake near Oslo, Norway whose gene sequence does not match any known organism living on earth today, and this beasty combines genetic characteristics across plant, animal, and fungal kingdoms. It is believed to be the closest living organism to the original organisms that spawned all animal life on earth."

51 of 198 comments (clear)

  1. Oblig. by frank_carmody · · Score: 4, Funny

    So what's the /. UID of this thing?

    1. Re:Oblig. by djl4570 · · Score: 5, Funny

      -1^.5

    2. Re:Oblig. by Samantha+Wright · · Score: 3, Funny

      Yeah, it still uses EBCDIC for pretty much everything, like most protists.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    3. Re:Oblig. by Chrisq · · Score: 5, Funny

      So what's the /. UID of this thing?

      Judging by the picture in the article, it is none other than Cowboy Neil himself.

    4. Re:Oblig. by Kupfernigk · · Score: 2
      EBCDIC. For whenever even ASCII isn't a sufficiently irrational encoding.

      Actually, it should still use the even older Baudot/Murray code, in which /. is 11101 11100. So its /. uid would be 956.

      --
      From scarped cliff or quarried stone she cries "A thousand types are gone, I care for nothing, no not one."
    5. Re:Oblig. by JazzHarper · · Score: 5, Informative

      But... but... which day did God create that one again?

      The fifth day. "Read your damn Bible."

    6. Re:Oblig. by trevc · · Score: 2

      Nope - it is called "42"

    7. Re:Oblig. by Empiric · · Score: 2

      Posting an objection on behalf of the guy from 234 AD.

      "And with regard to the creation of the light upon the first day . . . and of the [great] lights and stars upon the fourth . . . we have treated to the best of our ability in our notes upon Genesis, as well as in the foregoing pages, when we found fault with those who, taking the words in their apparent signification, said that the time of six days was occupied in the creation of the world..."

      --Origen of Alexandria

      --
      ~ Whence do you come, slayer of men, or where are you going, conqueror of space?
    8. Re:Oblig. by DanielRavenNest · · Score: 3, Funny

      The protozoan was heard shouting "Hey you young species, get off my pond!"

    9. Re:Oblig. by KhabaLox · · Score: 2

      So what's the /. UID of this thing?

      T3K3L1-L1

      I immediately read that as TK-421.

      --
      Ceci n'est pas un sig.
    10. Re:Oblig. by RodBee · · Score: 3, Insightful

      You sound just like a fanatical "let's invade churches and call them stupid" Atheist.

      I am an Atheist myself. I think Gods are very improbable, and not needed to explain the universe. Thing is, I find bad enough that religious people try to convert me, so I don't do the same, because I don't want people to hate me.

      Also, I don't think that religious people are stupid. Maybe they have a reason to believe in a God. Maybe they are afraid of death. Maybe they never gave it a serious thought. There are a lot of reasons why someone would believe in God, and I refuse to believe stupidity is the only one.

      That said, I think I'm answering a troll. Well, whatever. I've already written this anyways,

    11. Re:Oblig. by gestalt_n_pepper · · Score: 2

      You mean "RTFB"

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      Please do not read this sig. Thank you.
    12. Re:Oblig. by gestalt_n_pepper · · Score: 2, Insightful

      I'm an agnostic, and I suspect that there are plenty of alien critters far in advance of us who would look pretty godlike if we stared at 'em up close. Might even be a few sentients that survived the creation and destruction of universes and possibly have even influenced same (or started a brand new universe as a gaming platform). Depends on what you think might be godlike.

      --
      Please do not read this sig. Thank you.
    13. Re:Oblig. by Anonymous Coward · · Score: 2, Insightful

      Please EXCUSE my dear Aunt SALLY; -1^.5=-1, but (-1)^.5=i

    14. Re:Oblig. by Sique · · Score: 5, Insightful

      No, by definition, a good scientist is good at science. There were deeply religious scientists (Max Planck), there were pathologically paranoid scientists (Kurt Gödel), there were confessedly agnostic scientists (Albert Einstein), there were esoterics (Isaac Newton), pantheists (Gottfried Leibniz) and atheist zealots (Bertrand Russell).

      To believe that a scientist has to have a certain worldview to become a good scientist is a religion in itself.

      --
      .sig: Sique *sigh*
    15. Re:Oblig. by Nadaka · · Score: 2, Informative

      I never said religious people are stupid.

      I said they were insane.

      I said the gods they worship are evil and dangerous to human survival.

      That is something very different than calling them stupid.

    16. Re:Oblig. by PRMan · · Score: 4, Funny

      You didn't ask a scientific question. You asked a theological one. And the responder just told you to RTFM. Classic Slashdot, if you ask me.

      --
      Peter predicted that you would "deliberately forget" creation 2000 years ago...
    17. Re:Oblig. by Nadaka · · Score: 4, Insightful

      You are completely ignoring the new anti-rationality pro-dark age crusade being waged by the radical christians, islamists, jews and hindu's of the world. Not to mention the christian apocalyptic cults and the general attempt by the faithful to convert or exterminate each other.

      Read your bible christian. Beginning to end. Old and new testament and tell me your god isn't a murderous psychopath instituting insane and arbitrary laws and demanding adoration under threat of violence. Your god is an evil god.

    18. Re:Oblig. by dkleinsc · · Score: 2

      Actually, you're oversimplifying agnosticism. There are several forms, of which this is just a subset:

      Atheist agnosticism - I don't know for sure that there is no God, but there's no proof of one.
      Theist agnosticism - I don't know for sure that there is a God, but I believe there is.
      Apathetic agnosticism - There may be a God, but he/she/it doesn't care what we do so it doesn't matter.
      Strong agnosticism - There's no way for any human to ever have a definitive answer to whether God exists.
      Weak agnosticism - I don't know for sure if there is a God, but maybe sometime in the future we'll be able to tell.

      --
      I am officially gone from /. Long live http://www.soylentnews.com/
  2. A bit of explanation to save you from RTFAing by Samantha+Wright · · Score: 5, Informative

    Here's the paper.

    And to ruin all of the surprise: it's believed to be about a billion years removed from other known protists. That's about the same age as multicellular life. Archaea are more distant from us than these protists.

    This is more baseless conjecture than anything, but its blend of unusual genes most likely suggests that it is the sole (optimized) survivor of a larger ecosystem of similar strains, which may have exchanged DNA through some horizontal gene transfer mechanism in the past. The relatedness to a distant organism in Tibet implies that at least one of these species was once geographically ubiquitous, or spread through some other means, and may have blended into its surroundings there.

    The measurement of the organism's "age" is based on the sequence of an extremely conserved gene that codes for a part of a very important cell component, the ribosome. That measurement reflects how many times the sequence has been altered since it last matched a suspected common ancestor with its nearest relatives. The researchers never said that it's been essentially the same organism for a billion years (although it looks that way in the summary and MSNBC article); since they only analysed live samples, not fossilized ones, there's no way of knowing (and I'd be sceptical about any claims that said we could sequence billion-year-old DNA.) At any rate, analytical genomics shows us that for the sequence to stay the same for so long, the environment would have to be completely static and the genes very specifically optimised, which was almost certainly not the case due to historical climate trends. The rate of sequence change is very reliable on a large scale.

    --
    Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    1. Re:A bit of explanation to save you from RTFAing by RandomAdam · · Score: 3, Funny

      Oh come on if you are going to use logic, reason and knowledge...oh and R'ingTFA /. is no place for you.

      Nice summary though.

      --
      @Random_Adam

      Sometimes a sig doesn't have to be funny!!
    2. Re:A bit of explanation to save you from RTFAing by RivenAleem · · Score: 3, Funny

      Cthulhu's gunna be pretty mad when he wakes up to find people have tramped through his shrubbery.

    3. Re:A bit of explanation to save you from RTFAing by interactive_civilian · · Score: 5, Informative

      In modern classification, there is no Protist kingdom. Protists are polyphyletic, which means they have representatives in many different groups (or Kingdoms, if you want), and each group is linked by a common ancestor. Though they are still working out the actual branches of the Eukarya tree (a lot of the early branching is difficult to resolve because of so much genome re-arranging and duplications, insertions, and deletions), one fairly recent paper suggests at least 6 "Kingdoms": Opisthokonta (which includes fungi, animalia, and some of what were previously thought of as protists), Amoebazoa (amoebas, slime moulds, etc), Archaeplastida (plantae, red algae, and green algae), Chromalveolata, Rhizaria, Excavata, and some groups that aren't clearly in those groups. This paper by Roger and Simpson from 2004 has a good summary:

      Simpson, A.G.B. & Roger, A.J., 2004. The real "oekingdoms" of eukaryotes. Current biology, 14(17), p.693-696. Available at: http://kfrserver.natur.cuni.cz/studium/prednasky/bunka/2005/simpson_eukevol.pdf. (PDF link)

      I'm sure there has been more work since then, but that paper is accessible to non-experts and a good overall read (though I recommend having wikipedia open to see what organisms they are talking about when they list names).

      Modern classification is a bit of a mess, because Nature doesn't fit into the neat hierarchical classification system that we grew up with. A good example of this is the idea of the Animal, Fungi, and Plant kingdoms of old. If Animals and Fungi deserve their own kingdoms, then at the same hierarchical level, each plant "phylum" should actually be a kingdom. Or something along those lines. But anyway more modern classification uses monophyletic groups (groups in which all members have a common ancestor; e.g. Eukarya is monophyletic because all eukaryotes share a common ancestor, but Protista is polyphyletic because there are protists which have a more recent common ancestor with animals than they do with other protists).

      ----------

      About the article, man that thing is a mess. Is it a translation problem, are the journalists who wrote it completely clueless, or are the researchers who discovered this organism extremely out of date with their classification? It reads more like a discovery from 1970 than 2012. :-/

      --
      "Empathise with stupidity, and you're halfway to thinking like an idiot." - Iain M. Banks
    4. Re:A bit of explanation to save you from RTFAing by Anonymous Coward · · Score: 5, Informative

      Pretty much. They're a garbage bag of mostly/variably single-celled eukaryotic creatures that don't fit into the traditionally multicellular kingdoms, such as animals, plants, and fungi. It's sort of what you'd be left over with if you took a big, branching tree (all of the eukaryotes) and lopped off large swaths of its branches. Eukaryotes themselves are a chimera-like mix of several bits and pieces (e.g., chloroplasts and mitochondria, which are thought to have been originally independent prokaryotic creatures: look up endosymbiosis). In the real world, classification is messy because life has had a rather complicated history.

      Imagine the worst conceivable spaghetti code, built to merely a "good enough to still be self-copyable" code standard, and duplicated (with copy errors), forked (speciated) and merged (endosymbiosis, crossover, and sex) zillions of times with no centralized repository for a few billion years. Then humans come along and try to figure out the code history after the fact, and after 99% of the code has been thrown away (extinct). It isn't going to be pretty. We have a broad outline of the plot to the story, and that's it so far.

    5. Re:A bit of explanation to save you from RTFAing by Kjella · · Score: 5, Funny

      Modern classification is a bit of a mess, because Nature doesn't fit into the neat hierarchical classification system that we grew up with.

      Yeah, multiple inheritance is a mess. They should have gone with single inheritance and interfaces instead...

      --
      Live today, because you never know what tomorrow brings
    6. Re:A bit of explanation to save you from RTFAing by PopeRatzo · · Score: 2

      there is no Protist kingdom.

      But by my ancestors I swear, there will be one someday...

      But first, we must take the North.

      --
      You are welcome on my lawn.
    7. Re:A bit of explanation to save you from RTFAing by ChunderDownunder · · Score: 2

      nah, duck typing.

    8. Re:A bit of explanation to save you from RTFAing by TheRealMindChild · · Score: 2

      Interfaces would be an inherited class definition with simply no code. Sorry to ruin your joke

      --

      "When life gives you lemons, don't make lemonade. Make life take the lemons back!" -- Cave Johnson
    9. Re:A bit of explanation to save you from RTFAing by IICV · · Score: 4, Interesting

      Yeah, multiple inheritance is a mess. They should have gone with single inheritance and interfaces instead...

      They did, once you get past the cellular stage. Multi-cellular creatures only have single inheritance (from a Pair<T,T>), and pretty much all of them implement the ISexualReproduction interface, though some implementations get really crazy and hacked together (that's legacy support in action, the slugs only do that because their mating scheme was initially developed for underwater environments and nobody thought to make the code compatible with less-dense atmospheres).

      It's just that some single-celled creatures have the crazy horizontal inheritance that causes so many problems in older programming languages; you end up with more of a crazed inheritance shrub, instead of a tree.

    10. Re:A bit of explanation to save you from RTFAing by avgjoe62 · · Score: 5, Funny

      Cthulhu's gunna be pretty mad when he wakes up to find people have tramped through his shrubbery.

      You mean then that dead Cthulhu's first words upon waking from a pleasant dream in his house at R'lyeh will be, "Hey! You damned kids get off my lawn!!"

      --

      How come Slashdot never gets Slashdotted?

    11. Re:A bit of explanation to save you from RTFAing by tepples · · Score: 2

      Why does nature insist on creating new lifeforms individually

      Cache locality.

  3. Re: Organism Closest To Original "Tree of Life" Di by Samantha+Wright · · Score: 4, Funny

    Nah, we already know what fruit the Tree of Life gave. It's the banana—haven't you seen the totally informative and 100% factual explanation of how perfect it is?

    ...

    ...

    I eagerly await to see how many moderators and respondents do not realise that this post is sarcastic.

    --
    Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
  4. Re:Very interesting by ByOhTek · · Score: 4, Funny

    I think from tfs, it is safe to say it is not a new form of life...

    --
    Self proclaimed typo king, and inventor of the bear destroying coffee table (patent not pending).
  5. Re:Get to the point! by siddesu · · Score: 2

    It doesn't use either. But it has acid for blood, it is very fast and aggressive and requires a host for breeding. Also, its DNA is shaped like a pyramid in a fashion that resembles the pyramids of all known civilizations.

  6. really? by symes · · Score: 2, Insightful

    I can't say I know a great deal about this area but it strikes me that "gene sequence does not match any known organism living on earth today" is not appropriate, seeing as we know so very little about what is crawling around the deepest parts of our oceans. It could well be this Norwegian fellow is quite ordinary.

    1. Re:really? by MartinSchou · · Score: 5, Insightful

      So, your problem is with the fact that it doesn't match any known organism, because we don't know what else might be out there?

  7. Wrong headline! by Anonymous Coward · · Score: 5, Informative

    It might be a basal eukaryote, but that does not make it basal life, i.e. bacteria and archaea were present on Earth for ~2 billion years before eukaryotes came about..

  8. Re:Very interesting by arth1 · · Score: 4, Informative

    It's not even a new discovery - it was discovered late 19th century, i.e. more than a century ago. And not in Norway either.
    What the Norwegian scientists do is study them closer, using a local lake as a source.

    So, another Slashdot summary that's dead wrong. It can't get any worse without a bikini clad lady on page six.

  9. So does this mean... by wbr1 · · Score: 2
    From TFA

    They compared its genome with those in hundreds of databases around the world, with little luck. In all that looking they "have only found a partial match with a gene sequence in Tibet.

    Is it part of the Rinpoche system? The next Dali Lama perhaps?

    --
    Silence is a state of mime.
  10. Re:Misleading title by erroneus · · Score: 2

    Why would that be neat? Wanna keep it for a pet? Wanna show the neighbors that you're "cultured?"

  11. Re:Read it wrong... by Greyfox · · Score: 2

    Life probably didn't evolve orgasms until way later. There's not much excitement to be had in cellular division.

    --

    I'm trying to teach myself to set people on fire with my mind... Is it hot in here?

  12. No! Bad Summary! by denmarkw00t · · Score: 3, Informative

    From The Herp Derp Summary:

    this beasty combines genetic characteristics across plant, animal, and fungal kingdoms

    This is never actually mentioned in the article, in fact...

    From TFA (emphasis mine):

    They found it doesn't genetically fit into any of the previously discovered kingdoms of life. It's an organism with membrane-bound internal structures, called a eukaryote, but genetically it isn't an animal, plant, fungi, algae or protist (the five main groups of eukaryotes).

    To me, at least, that doesn't say that it necessarily has characteristics from all of those kingdoms, and certainly doesn't imply that it "combines" them.

  13. Re:Read it wrong... by erroneus · · Score: 3, Funny

    [music]...breakin' up is hard to do... [/music]

  14. Re:The two main problems with TFA by Half-pint+HAL · · Score: 2

    1.Assuming we all evolved from a universal common ancestor we are all equidistant to the original tree of life

    That depends entirely on your metric. If it's by years, we're equidistant. If it's by genetic difference, we're pretty far away from the origin, and this things pretty close. If it's by generations, we're pretty close, and it's pretty far away. (Human mean-time-to-reproduction in the order of decades, primitive cellular culture mean-time-to-reproduction in the order of seconds.)

    --
    Got them moderator blues I blieve I walk out the do', With these mod-points I been gettin', I 'most never post no mo'
  15. Horrible, ambiguous, summary by Muad'Dave · · Score: 3, Insightful

    ...benign algae eating protozoan...

    So was it:
    1) a protozoan that eats benign algae (a benign-algae-eating protozoan ...)
    2) a benign protozoan that eats algae (a benign, algae-eating protozoan ...)
    3) a benign algae that was observed eating a protozoan (a benign algae, eating protozoan, ... [newspaper headline style])

    --
    Tiller's Rule: Never use a word in written form that you've only heard and never read. You will end up looking foolish.
  16. Usher's fault by Kupfernigk · · Score: 4, Insightful
    The whole taking the six days literally thing is a Protestant error. It's what you get when a lot of very literally minded people, such as Bishop Usher, collide with a metaphor. Even Newton fell for it, trying to work out the date of the Creation from the Bible and starting with Christmas falling on 25th December, 1AD. As Jay Gould used to call it, it is a failure to distinguish "non-overlapping magisteria", i.e. astronomy and geology on the one hand do not intersect with a poetic exploration of history and society on the other.

    The funny thing is that this literalism is very recent. As per my sig, quoting Tennyson, educated Victorians were already familiar with an enormously expanded timescale and the idea of replacement of species (he was writing in 1844, before Darwin published). And at school we used to sing that Victorian hymn which included the words "A thousand ages in thy sight are like an evening gone" - English protestants had no trouble at all with the idea that the "days" of Genesis were metaphorical

    Whether the original writers thought that, of course, is moot. But who did you believe in the early 1800s - a nomadic goat herder or the clever young men at Cambridge who were making such exciting discoveries? And why do apparently educated Americans claim to believe something that was shown to be false over 200 years ago?

    --
    From scarped cliff or quarried stone she cries "A thousand types are gone, I care for nothing, no not one."
    1. Re:Usher's fault by PRMan · · Score: 2

      And why do apparently educated Americans claim to believe something that was shown to be false over 200 years ago?

      Because there is so much scientific evidence.

      --
      Peter predicted that you would "deliberately forget" creation 2000 years ago...
  17. evolution both complexifies and simplifies by peter303 · · Score: 4, Informative

    Evolution is not directional, that is aiming toward a particular goal, say humans. It goes in both directions, both complexifying and simplifying in order to occupy all the ecological niches it can. Parasites and viruses may be examples of simplification of more complete organisms at one time. The organism in this article may be a simplification of a eukaryote too. Then maybe not.

  18. This is the seventh day by tepples · · Score: 2

    The whole taking the six days literally thing is a Protestant error.

    Especially when you consider that there was no "evening and morning" for the seventh day. This adds more support to the day-age interpretation of Genesis 1. God has rested; have you joined him in his rest?

  19. Moses by gd2shoe · · Score: 2

    To compound this, there were no "sons of Adam" to act as witnesses to the creation. Where did that knowledge come from?

    If you believe tradition, the first five books of the Bible were written by Moses... But he didn't live through Genesis. How did he come to all that knowledge? He could have abridged other writings, but that still doesn't explain the account of the creation. The explanation that makes the most sense? He (or someone else) was told by God or by an angelic messenger. Therein lies the rub.

    God has a habit of being intentionally obtuse at times. Every time someone receives a vision in their dreams, and every time a parable is told, there is someone present who will understand the symbolism. Yet most of the time, the message will go right over everyone else's head. One of the great problems with interpreting the Bible has to do with which passages are meant literally, and which are figurative. Most of the time, it's rather obvious, but there's always someone who will get it wrong. With Genesis, it's actually quite hard.

    The question isn't: is the creation account symbolic? The question is: How much of the creation account is symbolic, and of what?

    (Those who believe every word of the Bible is literal, really should reread the parables of Christ and the dreams interpreted by Daniel. Then they can try to explain why 100% of the other dreams and sayings recorded are all literal.)

    --
    I won't join Slashcott. OTOH, If Beta goes live, I just won't be back until it's fixed. Sorry Dice.
  20. Re:Easy Response by Nadaka · · Score: 2

    Very little evil has been done in the name of atheism. Not even the atrocities of the soviet union and china are done for atheism. They were done for the communist faith, or more accurately the faith in absolute personal authority held by the madmen who came to power.