Slashdot Mirror


New Ideas for Scientific Publishing Online

Albert Hybl is an Associate Professor of Biophysics at the University of Maryland who believes traditional scientific publications are often controlled by editorial cliques that don't necessarily select the best or most original articles available. He says that Open Source, Internet-based scientific journals are the wave of the future. Jon Katz touched on this subject last month. Today Professor Hybl tells us exactly how "Slashdot-style" scientific e-publishing could gradually replace the old way, even though, he says, "this will put a lot of Journal publishers out of business, and they're going to do a lot of kicking and screaming before they go." Open Source Scientific Publication Just as Gutenberg is credited for creating the movable type printing press, Harold Varmus, director of the National Institutes of Health, may be regarded as the creator of the E-Library.

The printing press provided a means to distribute multiple copies of political pamphlets, advertising posters, legal documents, novels -- and Journals containing scientific discoveries.

Scientific Societies use these Journals to disseminate research findings. The expense of Society membership and the additional fees for subscription to multiple Journals has gone out-of-bounds for both individual investigators and institutional libraries. It is just not feasible to expect a scientist/researcher or a member of the public to be able to subscribe to all of them or even to a few specialized Journals.

PubMed provides a powerful search engine for locating biomedical articles. PubMed searches are superior to browsing the specialty Journals. However, once you have used PubMed to find an article of interest you must then locate a library housing the Journal in which it appears, that has a Xerox machine with which to make copies of the sought-after articles.

Harold Varmus proposes that an open access e-repository be established to maintain permanent on-line and downloadable archives of scientific literature. The most obvious advantage of this to the researcher is immediate access to any published report via a hyperlink from the PubMed database. E-reports can also contain more information than print Journals, including larger data sets in various formats, pictures with greater detail, or even movies. Many of the costs associated with the publication of a Journal are avoided. Cited literature [footnotes] can also be hyperlinks, which simplifies in-depth background analysis for serious researchers.

Harold Varmus's proposal describes two methods for submission of a new report that could operate side-by-side. The first is to use the established editorial boards, and the second would be through a publicly available preprint repository.

European backers of Varmus's Proposal tend to favor the first, "closed" method of submission. Their claim is that by sticking to the traditional method there is less chance that the database would be flooded by poor quality reports. A subliminal reason for their desire to maintain editorial control might be that delayed publication gives the group that reviews the data extra time to analyze and extract ideas for future research before it is made available to the world.

With the second submission method, each submitted report would only need to be given a cursory review to eliminate voodoo science (SPAM for health care scams or unhealthy foods, etc.) before it was placed, unedited and unreviewed, into the preprint repository, where any interested party could read it. Each "preprint" report could be given a version number like most Open Source Software projects use. Perhaps the "development" version could show editorial strike-outs and new text in different colors from the original. The next higher, "stable" version would be the reviewed, edited, author-corrected copy. Still higher versions might contain supplementary information. Even after they are published, the lower versions should be archived and accessible for historical use.

The Harold Varmus Proposal would require an article to obtain two favorable reviews, perhaps from members of established editorial boards, before it was transfered from the preprint repository to the general repository. Varmus also touches on the possibility of more open reviewing "in which critiques of the scientific reports are accessible and signed." (Today, most scientific papers are reviewed anonymously.) I suggest that, in addition to solicited reviews, signed, unsolicited reviews should also be considered.

Summary

The electronic submission, publication, editing, indexing, archiving, retrieval and utilization of scientific reports, abstracts, and data is taking a significant turn, and Varmus's Proposal may help make that a turn for the better.

I, like Varmus, believe that since most scientific research is funded by the public, the public should have free access to it from open E-libraries via the Internet, and that the only person who should be allowed to claim "ownership" of a scholarly article is the person who wrote it.

No Scientific Society or Journal Publisher should be allowed to hold a copyright on scientific knowledge. The researcher is the only one who has the right to claim, "I discovered it and I reported it."

31 of 133 comments (clear)

  1. xxx.lanl.gov by Anonymous Coward · · Score: 2

    Not new. Scientists have been talking about this since before the web. A decade ago we were all using e-mail to swap preprints in TeX, and common repositories sprung up at various places. The biggest (in my fields at least) is xxx.lanl.gov.

    The problem with these -- and this was well-known at the start -- is the editorial and review process (or lack thereof). Five years ago at CERN there was some sort of conference on faster, more widespread and community-based systems than traditional peer-review-by-old-fogies.

    There are some good ideas going around, but scientists are naturally going to be cautious about changing the present system: after all, there's an awful lot of pseudoscience knocking at the door, trying any trick to look respectable. In light of that, and the awesome responsibility "science" has in today's society, I think the caution is understandable.

    BTW, in the earlier discussions of this topic (e.g. that conf. at CERN), I didn't get the impression that the traditional journal publishing houses were luddistically trying to hold on to their current niche. Fewer and fewer libraries are subscribing to the ever-more-expensive journals, and the printers know they're in a shrinking market. Everyone, including the publishing houses, is well aware of the fact that killing large numbers of trees isn't the effecient solution we're looking for.

  2. An Academic's POV on journals by Anonymous Coward · · Score: 2

    I'm subscribed to a few journals, and I figure the open-source method of having journals would reduce the cost of journals (paying in upwards of $200 a year for a journal is crap).

    However, I'm not so sure that we should open it up to people outside the discipline. This is my major concern. I don't want non-mathematicians reviewing SIAM, as I'm sure that non-physicians should have no right to review medical journals.

    Most hip journals post their articles, or most of their articles online already. SIAM, the Society for Industrial and Applied Mathematics. Mathematics publications aren't that sexy, so that attracts a limited amount.

    My major concern is that if we start pushing biomed articles, it'd be a good idea for academics to push open discourse. However, I do agree with the major concerns for health care providers. If a research article takes one position on a health condition and this is open to the public, this could damage health care treatment. An example of this is if there was some new fangled cancer treatment and it got published in a journal online and if I was a cancer patient, knowing this could present problems with dealing with your health care provider. What if the published research is wrong and incorrect? What if it's misleading to the untrained eye?

    Another topic that we have to talk about is whether or not most people would a) be interested and b) can understand topics in journals. I realise that the Slashdot reader is more intelligent than your average web surfer, but realistically, would your average AOL user be able to adequately understand stuff published in the NEJM (New England J. of Med)? Would they really care?

    All I'm saying is that we can't go nuts and start open-sourcing everything. Patience...

  3. Re:Slashdot style peer review... by David+Greene · · Score: 2
    The main problem I see with this or any totally open review system is that the credibility of the reviewer comes into question.

    When I review papers for a conference, the on-line forms require that I rate myself as a reviewer (often as an "expert" or not). The conference committee members are made up of respected researchers and there is an implicit assumption that these members will pick reviewers that know what they are talking about.

    If I rate myself a non-expert, I cannot recommend a paper for acceptance or rejection. I can only make comments and weak suggestions (i.e. a "weak accept" or "weak reject"). Is this good or bad? I could argue it either way.

    I'm not saying that a totally open review process can't work. I'm just saying it needs to have some thought put into it. Ultimately the conference committee members are responsible for choosing the papers (based on the reviews they receive and their own opinions). Who takes on that responsibility in an open system?

    One final point is that nothing prevents researchers from publishing material on the web. I often see pre-published papers made available for download. The consumer understands that the papers have not gone through a formal review process yet.

    --

  4. Re:Slashdot style peer review... by Trepidity · · Score: 2

    The problem with this is that you're trusting the general public to make decisions on the validity of a scientific paper. The average person does not have the knowledge to do so. In order to have an effective system, you need experts to actually peer-review the material, to assure that there are no factual errors in the material, or procedural errors in the experiments.

    That's the problem I see with this type of site. Any sort of crackpot scientist could put up an article and get a bunch of media attention, without there being any peer-review of his work first. Do we really want crackpot scientists getting easier access to the media?

  5. Re:Slashdot style peer review... by astroboy · · Score: 2
    I agree that peer-review is vital to filter out crackpots and commercial propaganda.

    Why?

    The various LANL preprint servers have been running since 1991 with no such scoring system. Everything that's submitted from somebody associated with a university or research institution is simply accepted.

    People are pretty knowledgeable about their own fields; it doesn't take more than skimming the abstract to see if its written by a crackpot, and only a bit more to see if its interesting to them. (And if it is to them, it need not be to someone even working on very similar problems.) People looking for info out of their fields shouldn't be reading the current state-of-the-art; they need to get up to speed first with, eg, review articles.

    So I'd tend to just skip the `rating' totally; other than an ego boost/dasher, I think most scientists would skim with, in Slashdot terms, the threshold set to -2 anyway.

  6. Being a scientist by BadlandZ · · Score: 2
    I would have to say, applying "open source" to science will be screwed up at every turn.

    A lot of modern journals are on-line now, but they require a subscription (of sometimes over $300). So, net access has started, that's a given.

    The problem is accessability, not peer review. Peer review is valid, very very valid. You can't do away with it or the result will be the "waste basket journals" that now exist in print being on the web. There are many "free" journals that will publish anything, send it to everyone they can, not peer review, and they don't care because they get advertizing money to print the journal.

    I have sketched out a very elaborate plan for an online journal about 3 months ago, and it is possable, but it would require a total "rewrite" of the whole peer review process. And, like it or not, a whole lot of money is involved. In my plan, there would be extensive peer review, yet, completely accessable to anyone free of charge across the net. And, the peer review would be structured so that "old boys" and "grudge reviewers" would be cut out of the loop. (Yes, sometimes scientists who are working on similar projects can shred a journal submission, without makeing any valid points, and the editor is forced to "accept" this review, because it's "an expert" in that field).

    The whole process can't be summed up in a "slashdot" story, it's very intense, and a very serious subject. But, I can say, there is a way, and from what I have seen that needs to be done, it will be a long way off, and we will be subject to years worth of "screwed up implementations" of the process before anyone fixes it.

    Being that the scientific publishing world is a very high dollar buisness, I won't spell out how I think it can be done _correctly_, because I don't want to see someone else who is already exploiting scientists get a better idea to further rape the real solid scientists out there.

    Now, if there were about a dozen strong willed, hard working scientists with the support of about a dozen hard working coders that were masters of system admin, web servers, and php3/sql, I would be happy to share the ideas I have _privately_ with them, only if they were willing to work on it, debate it, and develop something that worked the way _science_ should (meaning, the good work doesn't go unnoticed because it's not popular, the bad work was pointed out quickly and the authors shown the real holes in thier assumptions by real helpfull experts, and the scientists benifited from the process insted of further feeding the wealth of the publishing world).

    Don't get me going on this, because it's an ugly mess, and slashdoting solid science isn't the answer. For one, slashdot is a "discussion/news" forum, and if a story isn't "accurate" it fades away into the archives before someone invests half a million dollars and 3 years of work trying to build on that idea.

    1. Re:Being a scientist by BadlandZ · · Score: 2
      wow....you are that desparate for money and glory eh...

      You wanna know how much I make? It's a matter of public record... $12,000/year. Yea, true sign of someone money hungry, huh? That's a riot, I needed a laugh this morning.

      No, I'm not money of fame hungry. I am just pissed off at the Scientific Publishing industry, which charges outrageous amounts for "subscriptions," copywrites every printed word in thier pages even though they don't even understand what the work is or means, and has the nerve to charge the scientists if they want/need to publish a figure in color in thier papers.

      There are too many existing problems, and of all the companies out there that would exploite open source, the publication companies are probably the worst I can think of.

      It can be done, but I think it's time that the power be put back in the hands of the people actually doing the science, not the publishers. I repeat I would be happy to lay out a realistic plan for getting things back in the hands of the scientists, at no charge, with out any claim of "ownership" or ask for fame. But if you want me to tell someone who already charges $3000 for a 24 issue subscription how to make more money, your insane.

      Open Source has made significant inroad in lab science. But, I really don't want to see the publication end of things continuing to be dominated by rich giants who don't care about the science, only the profit margin. Giving them another low cost tool to exploit science is pretty low on my list of things to do today.

      Publish or Perish is a joke. I have never seen a hard working scientist have a lack of things to publish. Yes, they should be publishing, or else they are either 1) not working 2) have bad theories or 3) already raking in lots of money because they are working with an industry and patening everything under the sun.

      You think publish or perish is bad now, think about how much junk science would be out there if you illiminate the peer review process completely. Sure it's flawed, but not that bad, authors can always "resubmit" articals to the _same_ journal, and the journal will send it out to a totally new set of reviewers. I think it could be better, and I have some ideas of how, but... I'd rather see them done by the community, for science, not for money.

  7. the Open Source / Open Science confrance by BadlandZ · · Score: 2
    I saw that was comming. I would LOVE to go. I would truely love to go. I would even be willing to do a presentation on how I feel in the right hands open source, scientific publication, and the right kind of "model" could truely change how science views the net, computing, etc.

    I personally have strugled with getting Linux and FreeBSD accepted at my work. I know what it's like. Also, I have delt quite frequently with a range of quality and peer review in publication of scientific studies, and know what stands a chance at working, and what wouldn't.

    I'd give anything just to get a chance to go to that confrance... But, as it now stands, I am very busy getting some new work published, writing up to graduate this fall, and getting things together to present at the 218th ACS National Meeting, and 2000 PittCon. :-( So, all my money and most of my time is wraped up in that.

    If there is anyone out there going, please write me, and let me know if you could take notes, tap the talks, get me a program, or anything...

  8. Re:This has been done in Physics ... no panacea by Jim+McCoy · · Score: 2
    3. Why would an electronic archive be harder to maintain than a paper journal?


    This is the kicker really. Paper is physical. While this is looked down upon by most techies it really has several advantages:

    Wide distribution of the paper materials make ex-post facto modifications (i.e. rewriting history) much more difficult and almost impossible to hide.

    There are no format or obsolescence issues involved. I can go to the right library and read scientific literature from the 3rd century B.C. while demographic data from the mid-60s on punch cards is basically lost forever. The rapid changes to information format and medium in the information age means that keeping things in a format available to all would be a massive and expensive project over time.


    Dead trees work. So far nothing electronic has come close to this for the long term storage of information.

    jim

  9. Re:An Academic's POV on journals ( I disagree) by Koatdus · · Score: 2
    However, I'm not so sure that we should open it up to people outside the discipline. This is my major concern. I don't want non-mathematicians reviewing SIAM, as I'm sure that non-physicians should have no right to review medical journals.

    While I agree that having non-physicians review medical journals would probably be a mistake how do we say whether someone is a mathematician?

    Only someone with a degree in that area is a mathematician?

    I would suggest that there are a lot of people that do not have a degree in a certain area of math or science but that still know a great deal.

    I think instead the way to go is a /. type of moderating system along with guest critics for the more interesting papers. These guest critics would quickly develop a reputation as to thier intellectual powers, clear thinking, and fairness.

    We could also give a higher starting number to the comments of recognised scientists or experts. This would funtion similarly to the way anonymous cowereds start at -1 on slashdot where as people that are logged in start higher.

    Perhaps we could even have someones starting point be figured by some sort of average of how they have been promoted or demoted in past postings. Start new posters with a 0 and let them climb their way up or down from there over time.

    Another topic that we have to talk about is whether or not most people would a) be interested and b) can understand topics in journals. I realise that the Slashdot reader is more intelligent than your average web surfer, but realistically, would your average AOL user be able to adequately understand stuff published in the NEJM (New England J. of Med)? Would they really care?

    Probably not. But the fact that your average AOLer doesn't care about a subject doen't mean that you want to prevent him from reading about it if the urge strikes. Saying that he can't handle certain information is a mistake. There are plenty of places to read about junk science (like the supermarket rags), having seachable access to "real" science would be a nice balance.
    --
    Every wrong attempt discarded is a step forward - T. Edison
  10. Re:Slashdot style peer review... by Sloppy · · Score: 2

    Well Slashdot moderation is probably too democratic and anonymous for some. The mod scores don't have a lot of credibility behind them.

    I always though the best overall solution, which would work for anything from scientific peer-reviews to Slashdot or even entertainment reviews, would be to have non-anonymous reviewers, where everyone who wants to be a reviewer can give a rating to as many things as they want to. Then each readers simply pick what reviewer they consider to be the most credible, or best matches his own tastes. (And then sort or filter items based on the reviewer's scores.)

    You could even have "virtual" reviewers that are made up of composite of other reviewers. A total democratic virtual reviewer would be an average of everyone's scores, or a Slashdot-style virtual reviewer would be an average of a randomly-selected sample of reviewers, or a "board" that averages the scores of some select group.

    Do it that way, and it can have just as much credibility and high signal-to-noise ratio as a medical journal, or as much variety as Usenet -- it would all be up to the reader to choose who is the most trustworthy.

    And, of course, readers would pick different review settings for different topics. You might pick Charles Emerson Winchester III as your medical reviewer, Bourbaki-the-math-board for your math stuff, and Opyros-the-metal-dude for your music reviews. Whatever.

    --
    As copyright owner of this comment, I authorize everyone to defeat any technological measure which limits access to it.
  11. Re:This has been done in Physics ... no panacea by Solemn+Bob · · Score: 2

    These issues have been discussed in great detail in sci.math.research over the last few weeks. The final conclusion: lots of people continue to disagree with lots of other people. One of the best ideas that came out, in my opinion, is that the journal's real job is lending credibility to a paper. This purpose might be better served in the future by journals publishing reviews of articles available electronically, instead of the articles themselves. Of course, not every journal that's being published today could survive that way, but I don't think that's any real loss at all.

  12. Re:Slashdot style peer review... by Shoeboy · · Score: 2

    The problem with slashdot style peer review is that is might lead to slashdot style posts, I can see it now:
    Today on the Quantum Physics Review - Harvard professor Robert Gregors posted an article detailing a simple method of producing measurable quantities of strang quarks. Dr. Vanesh Purgabedi of Princeton responded with 'FIRST POST!!!!!!!!!!!!!!!!!!!!!!' This was promply moderated down to -1. A physicist calling himself 'Lord Voltron' observed that 'RED HAT SUCKS!!! I hate them.' This was moderated to a 3 for 'Insightful' MIT graduate student Allen Andrews observered that the energy requirements of Gregors' method would render it impractical for event the most well funded institutions. He was then accused by several 'Anonymous Particles' of beeing an 'AzzL1ck1ng M$ Wh0r3.' and moderated to -1 for being flamebait.
    --Shoeboy

  13. Re:Slashdot style peer review... by dillon_rinker · · Score: 2

    I think this could work, for a couple of reasons.

    1. This is what we have now. You can determine the validity of an article by seeing how many other researchers cite that it. Not a perfect method, but it does work. Of course, it implies that most master's theses are pure crap, as they are never cited.
    2. A mathematical technique for quantifying and validating this approach has been developed. I don't remember where I read this, but it was 5-7 years ago. The writer indicated that the technique could be used for ranking college football teams or for separating scientific research articles from pseudoscientific ones. You started by assigning values to some teams/articles, and an iterative process based on who played those teams or who cited those articles would eventually produce values for all teams/articles.

    So while /. moderation itself would not be good science, a formalized method of review by ALL peers could be successfully implemented. I think. :)

  14. Replacement for journals... by dillon_rinker · · Score: 2

    ...a monthly email with a dozen or so article ID #s...

  15. The evanescence problem. by AJWM · · Score: 2

    The thing is, stuff published on the web is evanescent. We've all encountered broken links, or links to pages that aren't what they used to be, etc. Sites come and go, and even archive sites eventually offline the stuff.

    The nice thing about paper journals is that you can usually find a copy *somewhere*. Maybe in some obscure library at the university of outer gondwanaland, maybe even only on microfiche, but the stuff doesn't go away just because somebody typed 'rm *' or reformatted the hardrive or rearranged their web site. I can dig up papers published fifty and a hundred years ago -- and sometimes that is very worth doing (among other things, consider the issue of prior art in patents). Try finding a web document from even five years ago, or five months in some cases.

    This is particularly relevant with articles that may not be "politically correct", whatever that might mean in a given context. Aside from the ease of simply destroying the article in question, it is comparitively trivially easy to change the offending article. Remember Winston Smith's job in Orwell's "1984"?

    I'm all for web publication -- when the pages are there it certainly simplifies finding them, and hyperlinking the citations to the originals and summaries to the raw data, etc, would be wonderful. But we need to give some thought too to how this stuff gets archived for accessibility ten, fifty, or a hundred years from now, and how the electronic copies avoid mutation. (PGP checksum, perhaps?)

    --
    -- Alastair
  16. Free Science Campaign by Ravenfeather · · Score: 2
    To this general end, I was quite impressed with Stefano Ghirlanda's Free Science Campaign. In particular, there is a lot of useful information decoding the copyright policies of the various academic publishers. Take a look!

    From the Preamble:

    When authors of scientific papers submit their manuscripts for publication in scientific journals, they are frequently asked to sign a copyright-transfer agreement to the publishers of the journal. After such a transfer, the authors may retain little freedom to use their own papers. For example, some copyright agreements forbid authors to make their works available on a web page: you might be reading something more interesting than this, now!

    We feel that such copyright policies greatly reduce the freedom of scientists and researchers to exchange information and ideas. In our view, what is important is making scientific literature fully available to all scientists, free of the restrictions that are imposed today. Who owns the copyrights is a secondary issue (please read our objectives for more information).

    If you are a scientist or researcher, or simply an interested person, please read on.

  17. Biology vs Physics by arne · · Score: 2

    One point missed here (probably because there are very few biologist reading ./) is that in biology (or in life science in general) the amount of published is much greater than in physics. Further it is often very difficult for a non expert to know if an experiment was carefully done or not. (How long was the incubation time, what cell-line was used etc etc). Finally no life-scientist write pappers in TeX and reading a word-double-spaced manuscript is much more difficult than a properly formated paper.

    So what an e-journal need to provide is:
    1) A ranking (peer-review, ./ style or somehow) that tells me (a) if this paper is correct (b) how important it is
    2) Someone formatting the paper into a nice layout.
    3) A good capacity for me to search of all papers, new papers, papers with keywords etc.

    --
    Copyright 1998 arne Verbatim copying and distribution is permited as long as this message is preserved
  18. Re:Peer Review by teraflop+user · · Score: 2

    One reason that there is a stigma attached to non-peer review and net based papers is that you can write any old garbage. I should know, my most cited paper (by a factor of 5) is in an electronic journal (It's not garbage, but it is informational rather than scientific peice).

    Publication lists are often used by funding boards to asses the credibility of a proposal from an author. While less than ideal, this is necessary because it would be impractical for every funding board to review every aspect of every proposers work - they have neither the time, or the breadth of expertise. If they included non-peer-review publications, then there would be some people who like writing churning out heaps of garbage papers.
    (I've reviewed some which are clearly rubbish. I've also asked for the editorial board to pick another reviewer when I disagree with the author concerned).

    At the same time it would be wrong to deny that there are a few fields in which a viewpoint has acheived 'monopoly status', and alternate views cannot be expressed, although it is uncommon for all the journals in a field to be so dominated unless the field is very narrow. Experience shows that the situation usually resolves itself as the current generation of reviewers retire, although that is frustrating for individual authors at the time.

    Given the balance between not abusing the nations tax $ on project with no scientific merit, and not holding up the progress of science, I think the balence in the current system is about right, even if it goes wrong in a few specific cases. If peer-reviewed electronic publishing can reduce the number of bad cases, I'm all for it.

  19. Re:Slashdot style peer review... by teraflop+user · · Score: 2

    This is partly dealt with by weighting reviews by the authors credibility, and an author has no credibility until they have published something credibile.

    There are openings for abuse, for example a small group could submit papers and lend eachother support. A more complex formula for credibility of papers and authors would help. It also won't help the problem of communicating an unpopular idea.

    The system could also implement the traditional approach, by simply giving the editorial board and their chosen reviewers credility, and giving none to anyone else.

    What I slightly object to in the current system is that my best and worst peer-review papers are given equal weight in any funding review, and all are given equal weight with papers from scientists both better and worse than myself.

  20. Peer Review by Raving+Lunatic · · Score: 2

    The one thing I think they'll kick and scream about the most is the notion of "peer reviewed" content, notably how the status-quo, published journal system is reviewed by professionals. My girlfriend is an oncologist (always digging up papers from somewhere) and some med friends of hers were discussing this the other night at dinner; there really seems to be a stigma attached to non-official net-papers. I think that's bunk myself, but perhaps a well-established site could develop its own mechanisms for developing the public-accepted pretense that its content is "peer reviewed", and still maintain the open-source ethic...

  21. Peer review often doesn't work by Anonymous Coward · · Score: 3

    Back when I was in grad school, my research happened to make a notable contribution to a hot topic at the time. I was (usually with other authors) submitting papers to IEEE journals at a rate of about 1 per 3-6 months. I also attended several conferences and got to know a lot of the major contributors in my research area.

    Typically, every submission got sent to 3 experts for review. My professor (and one of his collegues) even forwarded to me several papers they were asked to review. I noticed a couple of things regarding peer review:

    1. For every submission, there was a 50/50 chance that none of the three reviewers would know what the paper is really about. Part of this problem is that the IEEE journal editors simply can't know about all the topics being researched in their area and would often pass the submission to the wrong experts. These "experts" (in the wrong subject matter) often wouldn't give a shit about trying to learn about the topic at hand and would just give it a bad review. You could tell this was happening when you got your submission back with comments and criticisms that simply made no sense. I was asked to review a couple of papers that were out of my research area, and I did my best to research the prior literature on the subject and give a fair review, but many professors didn't have the time and would slam the paper rather than pass it on to somebody who would understand it.

    2. There is an "old boys" network present in every field of research. Most of these operate like an old fashioned closed businessman's club. Once you are accepted into the fold, everyone else kisses your ass and gives great reviews to any paper with your name on it, regardless of whether it is worthy of publication. The people who make it to this stage rarely make useful research contributions anymore, but they get their names on lots and lots of papers. All of the lesser known researchers practically beg the big boys to co-author their paper, thus virtually guaranteeing its publication. Some of the members of the "old boys" network have unbelievable egos that require constant stroking if you plan on ever making a name for yourself in the field.

    3. There are some researchers who will go to great lengths to stab you in the back. I remember the case of one little known French researcher who wrote a landmark paper in our field. In the review process, it was sent to one SOB who was a big player in the field but was notorious for being a backstabber and had questionable intelligence (I never knew how he got so well known in the first place). The SOB managed sit on the review and delay the paper's publication for over a year while he attemped to figure out what the French guy had done and duplicate his results. He sat on it so long in fact that he got his own paper published on the subject before the French guy's and stole all the credit. This dickhead, and several others like him, were also notorious for attacking their peers (and especially their peer's grad students) at any conference where one of their sponsors or potential sponsors were present.

    I left grad school thoroughly disgusted with the whole research community. Your status was measured by how many papers you published, not how many real contributions you made. There were too many people who capitalized on the original research of others by pumping out lots of papers covering slight variations in the application of the aformentioned original research. To keep up, you had to sell out and produce lots of junk papers with the right names on them. I managed to get published in IEEE journals 6 times in 2 years, but I'm only proud of two.

  22. "Open Science" by Anonymous Coward · · Score: 3

    This proposal is reminiscent of Drexler's suggestions for effective use of hypertext as outlined (for instance) in Engines of Creation (which is web-available, but I'm too lazy to find it right now). In fact, when he was describing hypertext in that context (before it was layered on top of the internet to create the Web as it exists today - which actually only implements about a third of the features of his proposed system) his discussion seemed to think of it primarily as a means of publishing scholarly information, reviewing it, and correcting for the lag-times and lack of back-links in conventional print media.

    This proposal doesn't seem to implement backlinks, but the availability of updating to correct bad information makes up for some of that.

    Some benefit might be had by looking at integrating some of the features found in the CritSuite (authored by Ka-Ping Yee and to be found at crit.org), which uses a proxy-server method to implement many of the missing features of true hypertext as a layer on top of existing WWW content.

    A good versioning system with history information available (analogous to CVS) is also desirable - this is somewhat reminiscent of Daniel Dennett's "Multiple Drafts Model" (which he used as a metaphor/model to describe how the mind handles memory, but which could equally well be taken at face value as a method for handling bona-fide document drafts in an electronic environment), but with better memory.

    I'm kind of skeptical here: a poorly implemented system is in some ways worse than no system at all, because it can lead to complacency. As long as careful consideration is given to which features are desirable, this could be a Very Good Thing.

    One characteristic to watch for is how much centralized control is given to "editors" over content and filtering. Automated filtering methods, trust networks, reputational ranking, etc. have been fairly well-developed ideas for years. It would be an unfortunate oversight to fall back on print-age social technologies when something better is available.

  23. Reputation networks by MaxZ · · Score: 3

    Academic publishing seems to be mostly based on the reputation or authors and reviewers (in fact, some papers originating from students of influential professors get published even though they are total crap).

    The other flaw in the current system is usually hidden from the masses - most professors don't review the papers themselves, but their grad students do. The professors rarely have the time to go in-depth on the paper, check the math, etc.
    Sometimes the name of the grad student is attached to the review when it's sent out, and sometimes not. So it's impossible to determine the reputation of the real reviewer of the paper.

    --
    --> Any fool can criticize - and many do --
  24. not a preprint server by pal · · Score: 3

    as stated in previously, without an editorial process, preprint servers are largely useless because of the amount of garbage one must wade through to get something useful.

    well, there are free, online journals that exist. they use the same peer-review process that print journals use, but eliminate the cost by eliminating the printer! for examples, The Electronic Journal of Combinatorics has been around since 1994. if you look at the list of editors, you're sure to recognize a few names.

    i believe that this is the answer. the free availability of this information is what is sought after.

    - pal
  25. This is desperately needed. by Trojan · · Score: 3

    Subscriptions to scientific journals easily cost $3,000-$5,000 a year. For this, university libraries get a bunch of scientific articles written by scientists (who are mostly fully paid by universities and science foundations), and reviewed by the same group of people. All of this costs the publishing company about $0.00. The publisher then has to do a bit of editing and finishing up. It's practically a free lunch. And Elsevier (to name just one) is raising it prices by 10% each year.

    On top of that, almost all journals demand the scientist to sign a Transfer of Copyright Agreement. If you're not careful, you could be sued for publishing your paper on your homepage.

    But now there's internet. We don't even need a press anymore. Potentially, there's lots of (library) money available that can be used to replace the old-style publishers. All it takes is for scientists to unite.

  26. Journal Publishers by nstrug · · Score: 4
    The scientific journal publication system is ripe for overhaul. I submitted a manuscript to a journal that shall remain nameless in February this year. Four weeks ago they contacted me to say that the Copyright Transfer form (yes, you have to give them your copyright before they consider publishing) had gone missing and could I please send another one; of course the manuscript was still sitting on the editor's desk. Last week I heard that the paper had been sent to a sub-editor who's job it will be to send copies (that I had to make) to reviewers for peer review. Sometime in early 2000 I will probably get reviewer's comments and amendments. I will then resubmit these and here nothing for another six months. If all goes to schedule the paper _may_ be published by late 2000 - two years after I did the original research. And for all this the journal will charge me (or rather NASA and therefore the US taxpayer) an exorbitant sum - $115 per page and $700 for each colour plate - and as my research area is satellite imagery I can't help but use a lot of colour.

    A subscription to this journal, I might add, costs several hundred dollars per year and of course it does not pay any of its reviewers (like most academic journals, it is considered an 'honour' to be asked to review a manuscript.)

    Someone, somewhere is making a lot of money out of the whole journal scam.

    Nick

    --
    -- "It's a sad day for American capitalism when a man can't fly a midget on a kite over Central Park" - Jim Moran
  27. Open Source / Open Science by Bruce+Perens · · Score: 4
    There's an Open Source / Open Science conference happening in October at Brookhaven National Laboratories, Long Island, New York. I'll be speaking. I expect this to be a discussion topic.

    Thanks

    Bruce

  28. Slashdot style peer review... by teraflop+user · · Score: 5

    I agree that peer-review is vital to filter out crackpots and commercial propaganda. But rather than the traditional editorial board approach, why not slashdot style moderation?

    Give each reader and each paper a credibitlty score. The credibility of the reader is based on the average credilibity of each paper they have submitted. Each reader can give a credibility score to each paper they read. The score for the paper will be the submitted scores, weighted by the credibility of each reviewer.

    Now it is easy to make foulups in a paper the first time round, so an initial submission could be made to an editorial area. People could add comments slashdot style, and the authors could use these to revise the paper for final submission.

    When I started reading this, I hated it. But now I love it! If someone launches a journal in my field this way, I'll gladly submit a paper. Of course, there is no real need to have individual journals, if the database can be searched flexibly.

  29. This has been done in Physics ... no panacea by StupendousMan · · Score: 5

    In the various subfields of Physics, this idea
    of a public "preprint server" has been implemented
    for some time: check out the Los Alamos
    Physics Preprint server.

    I've been active in research (astronomy) for
    the past ten years or so, and I've had many
    conversations with other researchers on the
    future of scientific publication. Some of the
    main points are:

    1. Review/moderation is necessary. There are
    a _lot_ of people who have crackpot theories
    about the universe, and some of them aren't
    shy. Without refereeing of some sort,
    the number of scientifically worthless --
    see definition below -- papers will grow to
    the point that they may swamp the worthwhile
    papers. At that point, many users will stop
    using the archive.

    Note on "scientifically worthless": science
    is an enterprise which depends on its
    workers to adhere to a set of rules, such
    as understanding basic physical principles,
    checking the existing literature, creating
    falsifiable hypotheses, verifying new
    results, repeating experiments, etc. Papers
    describing ideas which aren't developed
    along these rules are, by definition,
    scientifically worthless.

    2. Scientists depend on their publication
    records to land good jobs, and to advance
    in those jobs. At the moment, in astronomy,
    at least, the existing
    electronic archives are NOT viewed as
    "real publications". There's a little bit
    of a chicken-and-egg problem: until the
    electronic archives are taken seriously,
    many people won't publish in them
    exclusively. But if everyone publishes
    elsewhere, why take electronic archives
    seriously?

    3. Many people, myself included, worry a great
    deal about the use of electronic archives
    10 or 20 years hence. I have paged through
    bound journals dating back more than 100
    years, and used them occasionally in my
    research. I can interpret the information
    easily. But I don't think it will be an
    easy matter to keep electronic media up-to-
    date over a century. The librarians to whom
    I've talked are _very_ worried about this.

    Yes, I know that it may not be difficult
    in THEORY to copy old materials to new
    formats and new media every N years;
    but in practice, it's a royal pain. In an
    era of shrinking library budgets, it may
    become fiscally impossible.

    On the other hand, I do very much support the
    idea of "Open Source" publications. It will
    enable many more scientists to publish their
    ideas. In my field, for example, the authors
    have to pay the journals about $125 PER PAGE
    for the papers they publish. My last paper cost
    over $2000, and I had to pay for some of it
    myself (since I work at a small university that
    doesn't have a lot of money to support research).

    The tricky thing will be to find a mechanism
    which keeps the good points of the current
    scientific journal system, while avoid the
    pitfalls (some of which I've mentioned above).

    --
    Michael Richmond "This is the heart that broke my finger."
    mwrsps@rit.edu http://stupendous.rit.edu