Domain: current-biology.com
Stories and comments across the archive that link to current-biology.com.
Comments · 15
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a bit irrelevant
I think the map is quite statistically irrelevant for some countries, such as Romania. Here is the table with the number of samples taken from each country: http://www.current-biology.com/content/article/table?uid=PIIS0960982208009561&tableid=tbl1&popup=y Romania (population 23 milion) had only 12 samples taken! In comparison, Netherlands (population 16 milion) had 500 samples taken. Other genetically diverse countries with small (or too localized) samples include France, Italy or Portugal. Of course, as others pointed out, add to this the fact that not all populations were studied, among which populations which had huge genetical influence, especially in South-Eastern Europe (Turkish, northern Slavic, Arab, Maurish, North African, Indian-gipsy etc)... So I find the map totally irrelevant under these conditions...
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Let's try to link to the source
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Re:Ah, but...
Actually, the article sort of sucks, so don't fault folks for getting the wrong impression from it. The real paper's summary section is a heck of a lot more clear (if drier and less overdramatic) than the article.
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Re:Am I missing something?
The article is definately out of whack. What they were measuring were the developments over time, not the mutations. In fact, there's no way to classify most mutations as beneficial or detrimental unless you actually sit and watch to see if they survive. Furthermore, from the actual paper it looks like this was a study of natural phylogeny, not sitting around watching generation after generation grow.
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Re:"Learning" to lie?
I think that you might find the answer in the original science paper, which unfortunately costs $30. (Link thanks to this comment.)
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Direct link
The submission is someone putting a spin to a story of someone putting a spin to a story based on someone putting a spin on this original scientific article.
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Re:Wait... what's different here?I was confused, too. Here's the reference to the actual paper:
Karin Kiontke, Antoine Barrière, Irina Kolotuev, Benjamin Podbilewicz, Ralf Sommer, David H.A. Fitch, and Marie-Anne Félix Trends, Stasis, and Drift in the Evolution of Nematode Vulva Development Current Biology (November 2007), 17, p. 1925-1937.
TFA seems to be misrepresenting the research somewhat. They claim that there is a divide in evolutionary theory between "random inheritance" and "deterministic inheritance." However, the actual article is describing the difference between unbiased (stochastic) and biased (selected or constrained) evolution of variation. In both cases the usual random genetic variation with fitness selection would occur.
The scientists are not claiming that evolution is deterministic or guided, but rather that there are strong selections and constraints that bias some variations to be more likely to appear than others. In their words:We propose that developmental evolution is primarily governed by selection and/or selection-independent constraints, not stochastic processes such as drift in unconstrained phenotypic space.
As an example of a constraint, they mention "generative constraints" (i.e. fitness is selecting for a certain feature, and there are multiple ways of achieving that feature, but one's genetic heritage will bias one implementation over another). Their evidence for the drift in variations being generally "biased" is based on the occurrence (over generations) of various traits: for instance they observe fewer "reversals" (reappearance of traits that were previously common) than would be expected if the variability were entirely stochastic/random.
This is, in any case, my understanding of the paper... but I'm a chemist/physicist, not a biologist! (So hopefully a biologist in the crowd will further explain this paper.) Overall, however, I think the article doesn't summarize the work properly, since they are suggesting that evolution is highly directed and deterministic, whereas the paper is instead analyzing the "degree of bias" that is inherent to the selection effects of evolution. For instance, the scientific paper doesn't claim that evolution can't produce non-advantageous mutations. -
Link to cited paper
This is a link to the paper cited in the article:
http://www.current-biology.com/content/article/fulltext?uid=PIIS0960982207021938 -
Misleading title
From the abstract of the original article: "We propose that developmental evolution is primarily governed by selection and/or selection-independent constraints, not stochastic processes such as drift in unconstrained phenotypic space."
The summary and title are misleading. http://www.current-biology.com/content/article/abstract?uid=PIIS0960982207021938
Selection is deterministic, drift is random. This is really no news, other than for developmental question at hand, whether a variation observed can be explained through deterministic or stochastic process. -
Actual research article
As usual, the linked artice is sparse on actual details. Here's a link to the actual article in Current Biology:
http://www.current-biology.com/content/article/abs tract?uid=PIIS0960982206026583&highlight=haynes
The full text requires a subscription, but I've pasted the abstract below:
Reading Hidden Intentions in the Human Brain
When humans are engaged in goal-related processing, activity in prefrontal cortex is increased [1, 2]. However, it has remained unclear whether this prefrontal activity encodes a subject's current intention [3]. Instead, increased levels of activity could reflect preparation of motor responses [4, 5], holding in mind a set of potential choices [6], tracking the memory of previous responses [7], or general processes related to establishing a new task set. Here we study subjects who freely decided which of two tasks to perform and covertly held onto an intention during a variable delay. Only after this delay did they perform the chosen task and indicate which task they had prepared. We demonstrate that during the delay, it is possible to decode from activity in medial and lateral regions of prefrontal cortex which of two tasks the subjects were covertly intending to perform. This suggests that covert goals can be represented by distributed patterns of activity in the prefrontal cortex, thereby providing a potential neural substrate for prospective memory [8, 9, 10]. During task execution, most information could be decoded from a more posterior region of prefrontal cortex, suggesting that different brain regions encode goals during task preparation and task execution. Decoding of intentions was most robust from the medial prefrontal cortex, which is consistent with a specific role of this region when subjects reflect on their own mental states.
Also, the final paragraph from the conclusion, which discusses where they'd like to go with this in the future:
Taken together, our results extend previous studies on the processing of goals in prefrontal cortex in several important ways. They reveal for the first time that spatial response patterns in medial and lateral prefrontal cortex encode a subject's covert intentions in a highly specific fashion. They also demonstrate a functional separation in medial prefrontal cortex, where more anterior regions encode the intention prior to its execution and more posterior regions encode the intention during task execution. These findings have important implications not only for the neural models of executive control, but also for technical and clinical applications, such as the further development of brain-computer interfaces, that might now be able to decode intentions that go beyond simple movements and extend to high-level cognitive processes. -
Re:Very interesting.
You can already read the paper for free.
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What about effin' links to the effin' article...
...so we could have skipped the inevitable trolling by people that haven't read the damn article, seeing that the damn introduction effin' explains why the damn observation is effin' novel?
http://www.current-biology.com/content/article/ful ltext/?uid=PIIS0960982207008019
There are also damn videos going along with the damn artice, which might be of effin' MILD interest to people reading this slashdot entry, MAYBE?
http://www.current-biology.com/cgi/content/full/CU RBIO/unassign/PIIS0960982207008019/
Man. Editors. Send in the chimps with the pointy sticks. -
What about effin' links to the effin' article...
...so we could have skipped the inevitable trolling by people that haven't read the damn article, seeing that the damn introduction effin' explains why the damn observation is effin' novel?
http://www.current-biology.com/content/article/ful ltext/?uid=PIIS0960982207008019
There are also damn videos going along with the damn artice, which might be of effin' MILD interest to people reading this slashdot entry, MAYBE?
http://www.current-biology.com/cgi/content/full/CU RBIO/unassign/PIIS0960982207008019/
Man. Editors. Send in the chimps with the pointy sticks. -
Urban birds and 'rap style'Dear god that's just stupid - It's got absolutely nothing to do with rapping or urbanisation, just communication. The more I see of science reporting, the more depressed I get (hence I'm trying to do it better myself).
The original report said that the urban birds have shorter songs with an upshift in frequency, all the better to compete with traffic noise. You can read a more sciency report on it at Science Daily. The paper's abstract:
Worldwide urbanization and the ongoing rise of urban noise levels form a major threat to living conditions in and around cities. Urban environments typically homogenize animal communities, and this results, for example, in the same few bird species' being found everywhere. Insight into the behavioral strategies of the urban survivors may explain the sensitivity of other species to urban selection pressures. Here, we show that songs that are important to mate attraction and territory defense have significantly diverged in great tits (Parus major), a very successful urban species. Urban songs were shorter and sung faster than songs in forests, and often concerned atypical song types. Furthermore, we found consistently higher minimum frequencies in ten out of ten city-forest comparisons from London to Prague and from Amsterdam to Paris. Anthropogenic noise is most likely a dominant factor driving these dramatic changes. These data provide the most consistent evidence supporting the acoustic-adaptation hypothesis since it was postulated in the early seventies. At the same time, they reveal a behavioral plasticity that may be key to urban success and the lack of which may explain detrimental effects on bird communities that live in noisy urbanized areas or along highways.
From Current Biology here and you can even listen to the songs yourself. -
Urban birds and 'rap style'Dear god that's just stupid - It's got absolutely nothing to do with rapping or urbanisation, just communication. The more I see of science reporting, the more depressed I get (hence I'm trying to do it better myself).
The original report said that the urban birds have shorter songs with an upshift in frequency, all the better to compete with traffic noise. You can read a more sciency report on it at Science Daily. The paper's abstract:
Worldwide urbanization and the ongoing rise of urban noise levels form a major threat to living conditions in and around cities. Urban environments typically homogenize animal communities, and this results, for example, in the same few bird species' being found everywhere. Insight into the behavioral strategies of the urban survivors may explain the sensitivity of other species to urban selection pressures. Here, we show that songs that are important to mate attraction and territory defense have significantly diverged in great tits (Parus major), a very successful urban species. Urban songs were shorter and sung faster than songs in forests, and often concerned atypical song types. Furthermore, we found consistently higher minimum frequencies in ten out of ten city-forest comparisons from London to Prague and from Amsterdam to Paris. Anthropogenic noise is most likely a dominant factor driving these dramatic changes. These data provide the most consistent evidence supporting the acoustic-adaptation hypothesis since it was postulated in the early seventies. At the same time, they reveal a behavioral plasticity that may be key to urban success and the lack of which may explain detrimental effects on bird communities that live in noisy urbanized areas or along highways.
From Current Biology here and you can even listen to the songs yourself.