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Public Library of Science Launches

limbicsystem writes "The first issue of the free journal Public Library of Science Biology hits the presses tonight. With Lawrence Lessig on the Board, the PLOS team are taking the Creative Commons to the world of science publishing and hope to compete with the big-name journals Science and Nature. The move towards freely-available scientific journals is supported by major funding bodies who are tired of seeing their grant money spent on subscriptions to commercial journals that can cost thousands of dollars a year. PLOS-Biology is available online at plos.org. The inagural issue has an essay by the executive director of the creative commons, Glen Otis Brown. Oh, and it's all running on Linux ;)"

101 comments

  1. First Post by Anonymous Coward · · Score: 0, Troll

    Hehehe!

    -DT

  2. I like the sound of it. by Sheetrock · · Score: 0, Troll
    Ever since I began using the Internet, I invisioned its future as a massive online repository of information and media. It's nice to see that with projects like this, MIT OpenCourseware, and Project Gutenberg, some of the walls to information are beginning to crumble.

    Knowledge is worthless if the right people don't have access to it. Who knows what sorts of inventions and discoveries we've missed out on because the person who could bring them to us lacked a critical element of the formula?

    Anyway, it's good to see that science is starting to open up, hopefully with medicine to follow. There's another interesting resource I found, Origins, that has a great deal of scientific articles that may be of interest to people who are persuing that type of field, and no doubt a great deal more that will spring up now that the door has been opened to free scientific knowledge on the Internet.

    --

    Try not. Do or do not, there is no try.
    -- Dr. Spock, stardate 2822-3.




    1. Re:I like the sound of it. by orthogonal · · Score: 2, Insightful

      There's another interesting resource I found, Origins, that has a great deal of scientific articles

      I was wondering why the parent article was modded "Troll", so I followed the link. It's a web site advocating the pseudo-scientific, crypto-creationist "Intelligent Design" nonsense.

      If you haven't stepped in this dogpile before, "Intelligent Design" basically claims not to necessarily advocate a God, but does advocate the need for a fore-thinking "designer" to account for the complexity of life. It ignores the implicit bottomless recursion: if all life on Earth is the product of an intelligent designer, and indeed required, because of its complexity, and intelligent designer, wasn't that designer itself so complex as to require an intelligent designer, and so on ad infinitum? Yes, it's turtles all the way down, unless of course you propose a timeless and omnipotent god. And thus, "Itelligent Design" is just Creationism given a shave and haircut and dressed up in a stolen lab coat to hid the priestly vestments.

      In times past, Creationists would point to the eyes, and ask how such a marvelous and complex device could be the product of "random" evolution; but now scientists have simulated the development of the eye and shown it actually doesn't take that any forethought or much time (in evolutionary terms). So to, the "Intelligent Design" advocates hang much of their "theory" on aspects of biology (like rotating flagella in bacteria) that to them is surprising or "unlikely". It should not need to be said -- but unfortunately does need to be said -- that the argument from personal surprise is not science.

      We can find many things that are true but counter-intuitive -- including much of physics, not to mention the apparently built-in inability of humans to intuitively grasp certain ideas about statistical likelihood (witness the popularity of lotteries), or concepts, such as "infinity", that our evolution did not prepare us to easily come to terms with. But only the "Intelligent Design" "theorists" see "I wouldn't have expected that" not as a statement about the limits of human minds, but about the limits of the universe. Being dumbfounded by the grandeur of the universe may make good poetry and pleasing holy books, but it's emphatically not science, and neither is "Intelligent Design"; it's religious opinion masquerading as science.

      All that said, while I strongly support keeping so-called "Intelligent Design" out of the public schools and out of any serious scientific discussion, I'm uncomfortable calling the parent post a "Troll". Just because I/you/we don't agree with an opinion does not make it a troll, and I prefer open discussion and refutation of bad ideas to their suppression with mod points. Bad ideas, especially, need the disinfectant of open discussion. That's my opinion, anyway.

    2. Re:I like the sound of it. by Wolfbone · · Score: 1
      "If you haven't stepped in this dogpile before..."

      Unfortunately I have - many, many times and it smells worse each time. Every web based science forum I've seen seems to attract hordes of these demented parrots trotting out the same turgid nonsense over and over again - only retreating into hysterical insults and emotional outbursts when their arguments have all lengthily and painstakingly been torn apart by the same old counter-arguments for the gazillionth time. The next day they return and start all over again.

      I consider /. to be a refreshingly intelligent relief from such fora which are often ruined by the sheer weight of unmoderated drivel they garner. I have come to believe that the worst of it is in fact the plausible sounding and apparently sincere stuff that seems to merit a response because many less experienced people will be taken in and will respond. The genuinely interesting stuff can end up being diluted out of existence, homeopathically perhaps.

      I agree with what you say about bad ideas needing open discussion and refutation but I don't think the grandparent post fits into that category. It was a superficially reasonable post carrying a link that at the very least could be regarded as off topic. So I am glad that in the absence of a 'negative insightful' or 'sneakily offtopic' modifier this post was modded down as a troll. If it had been me I would've found it a tough call since the body of the post was so unexceptionable but I thought it was laudably conscientious of the moderator to actually follow the link and discover the hidden trollery (or whatever it was).

    3. Re:I like the sound of it. by tuba_dude · · Score: 1
      Thanks for the rant, It was nice and intellegent. I'd agree with you too. I think hiding things that we don't agree with won't make them go away. Open, calm and balanced debate's the best way to go. You won't always turn out to be right, but if you can't deal with that, why are you bothering thinking about science anyway?

      Thanks again, it's always good to read something that makes ya think.

      --
      "The government of the United States is not, in any sense, founded on the Christian religion."
    4. Re:I like the sound of it. by cascadingstylesheet · · Score: 1

      Creationists would point to the eyes, and ask how such a marvelous and complex device could be the product of "random" evolution; but now scientists have simulated the development of the eye and shown it actually doesn't take that any forethought or much time (in evolutionary terms).

      Who has simulated the development of the eye and found the results you describe? What were the conditions of the simulation?

    5. Re:I like the sound of it. by orthogonal · · Score: 1

      Who has simulated the development of the eye and found the results you describe? What were the conditions of the simulation?

      See "A Pessimistic Estimate Of The Time Required For An Eye To Evolve", D.-E. Nilsson and S. Pelger, Proceedings of the Royal Society London B, 1994, 256

      Or a summary here.

    6. Re:I like the sound of it. by HiggsBison · · Score: 1
      Yes, it's turtles all the way down, unless of course you propose a timeless and omnipotent god. And thus, "Itelligent Design" is just Creationism given a shave and haircut and dressed up in a stolen lab coat to hid the priestly vestments.

      I'm a Urantia Book reader. I don't consider the belief in an omnipotent god, who transcends time and space, to be an act of logical desperation. I also tend to thump the UB and say "it says here that logic cannot prove or disprove matters of spiritual truth". :-) I would concede that a belief can easily crumble under the weight of a logical absurdity.

      I think the matter of the theory of intelligent design can be debated intelligently. I don't see it happening much.

      As for the "Troll" rating: I think it was deserved. It got you started. And that got me started. QED

      --
      My other car is a 1984 Nark Avenger.
    7. Re:I like the sound of it. by Anonymous Coward · · Score: 0

      Just go here:

    8. Re:I like the sound of it. by Anonymous Coward · · Score: 0

      After looking at their history, I would call them a troll.

  3. Tropical Illness by rf0 · · Score: 1, Funny

    Cool now I can find out more tropical diseases that I might be suffering wrong and spend more time with my cute local doctor :)

    Rus

  4. Peer review and perception by rhetland · · Score: 4, Insightful

    Journals have become *very* expensive. Even for those of us at universities, who have unlimited online access, we are paying gigantic prices for these journals indirectly through library fees. Many journals are over $1000 a pop, and more for online access. PLOS is one of many answers to this problem.

    Because most people can already get to publication quality work even using such outmoded technology as MS word, it seems that these journals do not necessarily have to exist to typeset papers, as in the old days.

    As far as I see it, the biggest impediment to a successfully open source journal is peer review. The quality of the journal has to be insured. This does not mean that people get paid to review papers (I wish...), but rather that there has to be a knowledgeable editor who knows who knows what in the field, and can put together different reviews to actually decide if the paper is publishable or not. Again, often this person can be underpaid, but there does need to be some sort of staff. It will be interesting to see how PLOS deals with this.

    Once these problems have been overcome, the journal needs to be seen as a good place to publish. Reputation is critical to the success of a journal, and it depends mostly on the quality of papers that it publishes. There are many ways to rank journal influence, but most have to do with how often papers from that journal are cited in other scientific papers. Hopefully, with more access, PLOS will have an edge here, since you could send an electronic copy to all your colleagues completely legally.

    Finally, it will be interesting to see how many other fields are added. Will they stick to the biggies, like genetics and medicine, or will they head off into the smaller disciplines.

    I for one, am hoping for the this project to succeed.

    1. Re:Peer review and perception by herrison · · Score: 1

      I really hope to see this area of publishing revolutionized in the next few years: it's moving very slowly. The most "exciting" thing at the moment is the 'author pays' model of 'free publishing'. However, there appears to be no exciting movement in using technology to reduce costs. As you say, the process of peer reviewing is the most important. I have championed the /. method of working at several conferences in the last couple of years - the comment/moderate/metamoderate approach could be used to build up a community of experts. I know it'd remove the "mystery" of the editorial process of journals, but there's about as much mystery about that as there is about publishing costs.

      --
      You know what I miss? Leeches.
    2. Re:Peer review and perception by pphrdza · · Score: 2, Interesting
      Will they stick to the biggies, like genetics and medicine, or will they head off into the smaller disciplines.

      Actually, it's the smaller disciplines (in science anyway) that have some of the highest costs. Brain Research, for example, runs $10,000 per year, last time I checked. Part of the reason for the high cost is the limited audience to spread the cost of publication around (it costs less per copy for 100,000 subscriptions than for 5,000). Related to that is the skyrocketing costs of science journals which has made libraries, the main market for these high cost journals, drop a lot of them, thereby lowering the number of subscriptions (and usually causing a higher cost for the remaining subscribers).

      O.K., checked the Elsevier site, and found a Brain Research subscription has to be purchased as part of a package which costs "USD 21,269 for all countries except Europe and Japan."

      ouch.

    3. Re:Peer review and perception by Davak · · Score: 1

      Journals are very expensive. No doubt.

      Likewise, journals save lives... at least in the medical profession. Working in a university hospital we get the worse cases, and the rarest cases--and we reference the literature frequently. Just last week I was getting one of my buddies to translate an article from German...

      The medical journals, at least, are making this work by giving discount rates on subscriptions... or charging huge fees if you need access to an article on a one time basis. Thus, the hospital/university just buys subscriptions to all the electronic journals to keep from having to pay these really high fees.

      Anyway, we can all access this information... at least in abstract form. Enjoy reading about your favorite disease on pubmed.

    4. Re:Peer review and perception by t4b00 · · Score: 1

      "Journals have become *very* expensive."

      Only the ones that aren't free.

      Wikipidia is a good example of a good quality, free form content/knowledge baise.

      http://c2.com/cgi/wiki?WikiPedia

      "As far as I see it, the biggest impediment to a successfully open source journal is peer review."

      As far as i see it, this it totally wrong. So long as the journal is made public during the peer review process, and the actual "peers" (the readers) can take part in the process. (maybe a standard can be made for displaying the pages "draft status" as it makes its way to becoming a "finished" work. However, with that said, in an ever growing subject as science, I dont think we are ready to call any paper "finished" that is at least untill we solve ALL of the mysteries of the universe. New discoveries are made daily, constantly improving upon if not overturning entirly previous works thought to be "finished. the theory behind TRUE "peer review" by definition allows for a continuous update, in accordance with everchanging technology. Such a thing is "the wiki way".

      Of course, the quality of the content depends upon the quality of the contributor, but, as another slashdotter said earlier this week in reference to an unrelated issue you can usually tell the difference between the "cream that rises to the top" and the "crap that floats." I have found this also to be true about the content found in wiki's and wiki clones.

      Dont get me Wrong, I welcome ANY efforts to make process in publication of such "journals" or (any media for that matter) more open ;)

    5. Re:Peer review and perception by ragnar · · Score: 1

      You bring up a great point. I'm working on a project at the University of Virginia to develop an online journal with emphasis on Nineteenth Century Literature. The peer review aspect is regarded as one of the most important deliverables. It is the only way to consistently deliver good content.

      --
      -- Solaris Central - http://w
    6. Re:Peer review and perception by King+Babar · · Score: 2
      Actually, it's the smaller disciplines (in science anyway) that have some of the highest costs. Brain Research, for example, runs $10,000 per year, last time I checked.

      I'd like to point out that the field of Neuroscience now qualifies as Pretty Darn Big, and, moreover, it is moving Pretty Darn Fast. This is why Elsevier and others can charge hugely for their journals: the demand *is* there, and the cost of *not* having Brain Research or (to pick a non-random example) the Journal of Comparative Neurology can be huge.

      Historically, journals like J. Comp. Neur were really expensive because their field (neuroanatomy) basically forced them to have lots of high resolution (and even full-color) plates. This is just not a very cheap thing to do. These days, however, when people are increasingly reading articles on-line, that cost has gone away. A similar issue existed with type-setting. Type-setting is exepnsive. Running a conversion filter over somebody's LaTeX or Word file is NOT. There do remain some real costs: the infrastructure for peer review is not that cheap.

      But the unit costs of production have gone DOWN a lot, especially for on-line publication. The fact that journal prices have gone UP a lot just demonstrates that these prices have no connection with publication costs and every connection with being a monopoly supplier of a service in demand. It really is this simple. And, at some point, journals *like* PLOS:Biology (if not PLOS:B itself) really do have a good chance to break the cycle.

      In any case, isn't really the size of the production run that does (or will) dominate but plain old market factors. Brain Research costs a ton because you can't substitute another journal to get the articles that they alone have rights to publish, and there is demand for the work that appears there.

      --

      Babar

    7. Re:Peer review and perception by mwood · · Score: 1

      One place to start reading about the discussion of peer review w.r.t. online journals (and a lot of other stuff about the relationship between scholarly writing and publishers) would be Stevan Harnad's e-prints archive:

      http://www.ecs.soton.ac.uk/~harnad/intpub.html

    8. Re:Peer review and perception by pphrdza · · Score: 1
      You're absolutely right about Brain Research. It does happen to be one of those journals where you can't substitute another to get the same type and quality of articles.

      This is exactly where PLOS comes in. How about they expand into Brain Research's territory? Of course, first you have to convince the authors it's a better idea to publish in PLOS than in Brain Research.

      Nothing like a little competition to bring reality to a market, eh?

    9. Re:Peer review and perception by Angst+Badger · · Score: 1

      As far as I see it, the biggest impediment to a successfully open source journal is peer review. The quality of the journal has to be insured.

      I wouldn't worry about it. For example, as your peer, I would like to point out that the verb you are looking for is "ensured", not "insured". Some other peer will no doubt come along and note that "insured" is a permissible, though not preferred, term for the usage you have in mind, and so on.

      The system breaks down, however, for truly awful misspellings like "rediculous", or people who cannot distinguish between "lose" and "loose" or "choose" and "chose". Those people are not my peers, and I will not stoop to correct them.

      --
      Proud member of the Weirdo-American community.
    10. Re:Peer review and perception by King+Babar · · Score: 1
      This is exactly where PLOS comes in. How about they expand into Brain Research's territory? Of course, first you have to convince the authors it's a better idea to publish in PLOS than in Brain Research.

      Actually, if you want "psychotically expensive institutional online access", the journals to pick on are anything by Cell Press. If PLOS could replace Neuron, the world would be a much, much less expensive place. :-)

      --

      Babar

  5. Others by BWJones · · Score: 1

    This is good news and I welcome the opportunity to publish in a peer reviewed journal free and open to the public. I should also mention however that the other big advantage of printing in online journals is that you have no publication costs related to color print charges and such. Right now I am preparing a manuscript that would end up costing many thousands of dollars to publish in traditional journals because of all the color charges related to publishing an atlas type of paper.

    Also, check out one of the original online peer reviewed journals, Molvis.

    --
    Visit Jonesblog and say hello.
  6. Others-DjVu squeeze. by Anonymous Coward · · Score: 0

    They could use this and cut down on that 65 MB size.

  7. There's no question it will succeed. by Anonymous Coward · · Score: 1, Insightful

    The fact that it exists is success already.

    What we need is a bit more activism on campus. I don't see why kids are so conservative these days. You'd think we'd be seeing people scan journals and share them on-line, but sadly that's not the case.
    Academic journals are one of the saddest scams in history. The authors aren't paid to write, they've got to write to get tenure or even a position for that matter. The journals themselves claim they're just covering costs, but the libraries are expected to check up millions of dollars in extortion each year. Well, guess who pays? Duh --the students.
    You'd think there would be a desire to take matters into their own hands among the youth on today's campuses, but they're oddly complacent.
    Luckily, they have their seniors like Lessig to wipe their asses for them.

    1. Re:There's no question it will succeed. by mwood · · Score: 1

      Concerning the price of academic journals and who pays, there's this little ritual that libraries go through every year, where a committee notes that, once again, journal prices have risen an order of magnitude faster than library funding, so which journals will we cut from our subscription list this year? The rising cost of journals is not just reflected in tuition or taxes, but also in the *loss of access* to other journals and in *decisions not to buy books* because there's no room left in the materials budget for that one.

      However, that's not an excuse for violating copyright. Try taking matters into your own hands in ways that the Establishment *can't* easily punish. Breaking the law just gives them an opportunity to put you out of their way.

  8. PLoS publication costs for authors are high by scientistguy · · Score: 5, Interesting

    While I also want to see PLoS succeed (and indeed have recently submitted work there), please note the PLoS publication charges per article at $1500 a pop. One also obviously has to pay to receive the printed form of the journal - although I doubt many will do this. So while the costs have been shifted and the science has been made more generally available to the public at large, grants are in fact going to be charged. Many journals charge publication costs for submitted and accepted work, but PLoS is definitely on the high end. This enterprise is going have to recoup for operating costs, and the largess of private donors won't completely cover it. Aside from this point, I do agree with many of your sentiments. I would not worry much about the editorial board. The professional editors they have signed up are first rate and quite idealistic. The academic editorial board is also quite strong. Judging from the quality of some of the initial submissions, they seem to be off to a strong start.

    1. Re:PLoS publication costs for authors are high by oook_in · · Score: 1

      $1500 does seem very high for publication costs, but I think it's a more "legitimate" charge on your grant. Also it would be a one-time occurence on your grant and only when you publish. Rather than many times that cost for all the different journals you need to subscribe to during your research. Ideally, suppose every journal just had high publication charges and distributed their content free, wouldn't researchers/libraries end up saving a lot? Of course, this would mean that researchers with a high output would be spending a lot of money publishing... publish AND perish, anyone? :-)

    2. Re:PLoS publication costs for authors are high by danila · · Score: 1

      While I also want to see PLoS succeed (and indeed have recently submitted work there), please note the PLoS publication charges per article at $1500 a pop.
      Does that mean researchers from third-world countries are indirectly excluded from publishing there? How many of them might decide that instead of trying to publish the results in PLoS their $1500 would be better spent on hiring a research assistant for a year (and publishing in some lesser journal)?

      --
      Future Wiki -- If you don't think about the future, you cannot have one.
    3. Re:PLoS publication costs for authors are high by Bowling+Moses · · Score: 3, Interesting

      Actually, $1500 per article isn't all that bad. Not too long ago I got a paper published. It cost $350 per figure, plus a charge for the first 10 pages (that I now forget) and then an additional charge for pages past the first ten. The total cost of publication for the lab for my paper was well over $2000.

    4. Re:PLoS publication costs for authors are high by Anonymous Coward · · Score: 0

      It is insane; they are funded by the Betty and Gordon Moore foundation. They claim to be a "nonprofit" -- we all know what that means -- a free license to commit fraud on the scientific public and pretend to be doing good for society. I bet they draw 6-figure salaries all around. My bet is to go with Elsevier, Nature, Science -- at least when I pay them I know my REAL PEERS will be watching. $1500 -- "Public" library of science more like $1500 -- "Pay" library of science. GET REAL.

    5. Re:PLoS publication costs for authors are high by alexdewaal · · Score: 1

      Somehow i get the sense that your REAL PEERS are more among the National Inquirer types...

      ...unless i'm overrating you.

  9. conflicting information by stonebeat.org · · Score: 1

    These 2 pages have conflicting information:
    http://creativecommons.org/learn/licenses/ http://www.plosbiology.org/plosonline/?request=sli deshow&type=figure&sici=journal-pbio-0000009-g 001
    Look at "ShareAlike" and Non-commericial. The symbols are wrong.
    Also why did they make the "ShareAlike" symbol very similar to CopyLeft? It confused when I first saw it.....

  10. Not really informative, but... by blake8087 · · Score: 0

    ... as a student of computer science, this is really fantastic. Journals are not cheap, and paying through the nose just for the priviledge of reading what should be public information is rather galling. It's nice to see commitment to the advancement of knowledge in more than just words, but with action.

    --

    --Slashdot readers delight in generalizing the behavior of other Slashdot readers.
    1. Re:Not really informative, but... by yintercept · · Score: 1
      Journals are not cheap, and paying through the nose just for the priviledge of reading what should be public information is rather galling.

      The counter argument is: collecting information, writing and publishing high quality work is extremely hard and expensive. The should be in the quote is an opinion. The counter argument is that research is expensive; so we need a market approach to help determine how the money goes to research to help determine which research projects gets funded. Expensive journals is a way of raising needed funds.

  11. there are still costs. by gimpboy · · Score: 1

    see the above comments where a person who submitted to this journal said it cost the submitter $1500 to process his submission. while this is alot of money, i think it's worth the price to maintain ownership of your work.

    --
    -- john
    1. Re:there are still costs. by BWJones · · Score: 1

      see the above comments where a person who submitted to this journal said it cost the submitter $1500 to process his submission. while this is alot of money, i think it's worth the price to maintain ownership of your work.

      I too believe that $1500 is a relatively small amount of money to maintain not only ownership of your work, but also ensuring that your work will continue to be available. My comment related to costs however was directed more towards actual printing costs associated with making color plates and press charges.

      I should also note that for those publishing in the vision community, Molvis, the journal referenced in the parent post is an excellent peer reviewed online journal, and has no publication costs.

      --
      Visit Jonesblog and say hello.
  12. This is really really important. by Tom7 · · Score: 4, Informative

    The PLoS is really important. More important than "open source", and it should be on the front page of slashdot.

    Listen: Right now, basically everything published in a journal in the last 50 years is *owned* not by scientists but by publishers. You might not realize this if you never published, but journals and conferences make you *assign the copyright* for your paper to the publishing company. Not license it to them for publication (this would be reasonable), but *give* them the copyright and lose your own rights to publish and distribute the work. Here's a sample agreement from the IEEE .

    This is seriously fucked up. It means that, if the publishers wanted, they could close up shop and never let anybody see the archive of scientific papers again. It means they can sue you if you publish your own paper on your web page, or make copies of it for a class you teach!

    Computer scientists, being handy with the web, typically publish their papers and then put them up on their websites, playing "civil disobedience." (Some journals have even caved to this, and part of the copyright assignment you actually get licensed to put the paper on your web page.) That means there's already a sort of PLOS for computer science: an index of Computer Scientists' web pages and publications at citeseer .

    The culture in other sciences, like biology, is really different. These guys write, sign the form, and then pay for a few paper copies of the article that they can give out if requested.

    The way it's happening in CS is one way to free science. It seems to be working. But for those who don't actively maintain web pages and don't have a culture where the web is the place to go to look for papers, the PLoS seems like a good way to make this happen. I really, really hope it succeeds.

    1. Re:This is really really important. by mwood · · Score: 1

      I have a saying about things like this copyright assignment jazz: "standard forms are for other people." If you've got a good paper, you have negotiating power. Tell the journal they can't have your paper unless you retain the copyright, or at least rights to delayed republication or self-archival.

      If you're not a Web whiz, you probably know (or share an elevator daily with) one who could help. Your institution could get a bit of PR mileage out of setting up a repository of archived papers by its members, and again you don't have to maintain the pages yourself.

      Even your institution doesn't have to cook up the whole thing in-house. See projects like www.dspace.org . Did I mention that DSpace is free and open-source?

    2. Re:This is really really important. by Tom7 · · Score: 1

      I have a saying about things like this copyright assignment jazz: "standard forms are for other people." If you've got a good paper, you have negotiating power. Tell the journal they can't have your paper unless you retain the copyright ...

      Have you tried this? There are two different parts of the machine here: the program committee, who decides what papers are accepted, and the publishing company, who handles the forms. I've never tried it, but the publishers don't really care much about the papers, so it's pretty hard to hold them hostage. I've you've done it and were successful, I would be interested in hearing about how that worked.

      There are two practical problems with this. First, the journals are the life-blood of academics. If you're a graduate student or new professor, you are really a slave to the journal's whim, because it's "publish or perish." Even if you're a tenured faculty member with nothing to lose, your co-authors might. In fact, there was even an initiative of loads of tenured faculty calling for a boycott of many major journals unless they opened up their archives to everyone for free (you may have read about it on slashdot a few years ago), but the journals called their bluff and it fell through. Second, there is the cultural problem that most disciplines simply don't look on the web for electronic copies of publications. There needs to be such a culture to create enough demand to make it worthwhile for universities or researchers to defy the journals and set up such archives.

    3. Re:This is really really important. by the+gnat · · Score: 1

      Computer scientists, being handy with the web, typically publish their papers and then put them up on their websites, playing "civil disobedience."

      Hmmm, I've seen plenty of biologists who do this, including my former boss, and none of them have been busted for this (so far). However, these usually tend to be fairly computer-savvy people already.

      Anyway, PubMed is already a much better way to find publications of interest in biomedical research than any other mechanism, since it's very well curated and comprehensive. The problem, of course, is that once you find an article you still can't get the full text unless you have an online subscription. I've had to go through my old employer to download Cell papers because my school doesn't want to shell out several million dollars to Elsevier. (Which is one of the reasons why one of the profs in my department is one of the PLoS founders.)

      By the way, biological journals, at least the ones I've dealt with, give you a fat stack of glossy reprints free of charge - anything more than that, of course, will cost a shitload. I have a folder with about four copies of each of my articles, but I'd like to have the full issues too.

    4. Re:This is really really important. by bcrowell · · Score: 1
      Computer scientists, being handy with the web, typically publish their papers and then put them up on their websites, playing "civil disobedience."
      The physicists were actually way ahead of the computer scientists here. BTW, the world-wide web was invented at a physics lab :-)

      BTW, I have never, ever, ever heard of a scientist hearing even a peep of complaint from a journal about distributing reprints and preprints electronically. It's just what everyone does.

  13. Indexing by neodymium · · Score: 2

    Does anyone know if the PLOS journals are indexed in major scientific databases (CAS, ISI WebOfScience,...) ? Couldn't find anything on the web site.

    1. Re:Indexing by Ben+Hutchings · · Score: 1

      Yes, they're going into PubMed Central (see the FAQ).

  14. Not quite a Microsoft-free zone by mcockerill · · Score: 1

    The PLoS information site indeed runs on Linux, but it's perhaps worth mentioning that the PLoS Biology journal itself runs on a rather less open platform. Kudos to PLoS for their launch though.

    For more on the ever-expanding open access movement in science, see Peter Suber's excellent blog: Open Access News.

    Also, check out the other major open access publisher, BioMed Central. BioMed Central launched in 2000 and has already published more than 3000 peer reviewed biomedical research articles.

  15. A modest proposal... by orthogonal · · Score: 2, Interesting

    Freely-available scientific journals are definitely the wave of the future, but I think PLOS is missing a greater opportunity to foster scientific thought

    Not only should these articles be made availble on the web to anyone who wants to read them, but to encourage the sharing of scientific ideas, persons ought to be able to post commentary on each article in real time, avoiding the typical several week tuern-around times required to mail letters to journals.

    Of course, all commentray letters are not created equal, which could make for a plethora of uninspired or even falacious commentary. To counteract this tendency, I think that those persons who, over time, demonstrate that they have "Insightful" or "Interesting" (or even "Funny") comments to make, be allowed to make other persons' comments more or less visible by awarding them positive or negative points.

    In turn, those awarded the most moderators' points ("mod points") would get a limited number of "mod points" (say, 5) to apply to future comments, perpetuating the cycle and allowing the best commentary on each article to rise to the top -- sort of a redistribution of "good" and "bad" karma.

    While I'm not aware that such a system has ever been tried before, I cannot imagine how it might be abused, and I'm sure it would act only to stimulate a flowering of scientific discourse.

    Comments, anyone?

    1. Re:A modest proposal... by nucal · · Score: 1
      And they could call it PLoSdot ...

      Also, there is a scientific popularity contest already out there Faculty of 1000

    2. Re:A modest proposal... by Anonymous Coward · · Score: 0

      I'm looking forward to the day when I can "First Post" a submission. And it will actually be relevant to post a comment about the sexual practices of goats.

    3. Re:A modest proposal... by Anonymous Coward · · Score: 0

      Seems to me there are a limited number of people recognized as authorities in any field. Maybe they could automatically be ``modded up'' while others would have to earn their ``mod points'' Maybe like all-star balloting for baseball _ send emails to those in the know and have them vote for their colleagues.
      Thanks,
      Alex (too lazy to register) Dominguez

  16. Other online journals by 11223 · · Score: 2, Informative

    There are other free journals out there as well - the one I'm most familiar with is the Journal of Artificial Intelligence Research, which is probably one of the most respected AI research volumes and has been published online since 1993.

    1. Re:Other online journals by Anonymous Coward · · Score: 0

      BioMedCentral publishes lots of free access journals.

    2. Re:Other online journals by ahfoo · · Score: 1

      Yes, BioMedCentral is awesome. I've been printing out all sorts of PDFs from their abundant journals and look forward to doing the same with PLOS.
      It might seem to be a bit of a tangent, but I want to mention something that I think is fairly important, if minor, detail about these on-line journals which is the format they are consumed in.
      While it's fine to get the gist of what's going on on-line, I perfonally prefer to print them out. With a refillable ink-jet model that prints front and back simultaneously it's really quite simple and low cost to make print copies. The only quesiton is the binding.
      What I do is print out all the articles in a journal for a year, stack them together and then use a regular electric drill with a small bit to drill some holes along the binding edge. Then, using a bit of thin guage wire, I bind a shish-ja-bob skewer to the front and back through the holes. A strip of cloth tape along the binding and a bit of glue to a card stock cover leaves me with a handsome bound volume that looks great on the bookshelf.
      I can hear the snickering even in cyberspace. But whatever, it works great and it's not really that much hassle once you have all the materials handy.

  17. Thanks Slashdot... by johnwyles · · Score: 1

    I am glad to see these types of postings on slashdot as I am a biology nut who normally would not discover things of this nature until much later. I know it is not a typical slashdot posting but I am very glad to see it (as I am the many other articles related to science and biology in particular).

    --
    [[ the only 15 letter word that is spelled without repeating a letter is uncopyrightable: it may soon be, however. ]]
  18. irony of scientific publication on internet by peter303 · · Score: 2, Informative

    One of the most basic tenants of the scientific method is the verification of scientific knowledge by by reproducable publication of data and methods. However the scientific journal - university library cabal is thwarting this goal by making scientific publications LESS AND LESS available by expensive prices, subscriptions, and lack of access to university libraries by outsiders. For example, the most widely read genral science publications Sience and Nature are online. However most content is by paid subscription only (universities often have blanket subscriptions). Even so, this is pretty open compared to journals in the medical sciences where online access is rare and prices astronomical.

    1. Re:irony of scientific publication on internet by Anonymous Coward · · Score: 0

      I think you mean tenet, not tenant. A tenant occupies a leased property. A tenet is a principle or belief.

  19. Peer review and perception-Failed business model by Anonymous Coward · · Score: 0

    " Part of the reason for the high cost is the limited audience to spread the cost of publication around (it costs less per copy for 100,000 subscriptions than for 5,000). Related to that is the skyrocketing costs of science journals which has made libraries, the main market for these high cost journals, drop a lot of them, thereby lowering the number of subscriptions (and usually causing a higher cost for the remaining subscribers)."

    I believe the phrase is "downward spiral". Start with a hight cost in a good economic market. bottom falls out of market. Subscribers start dropping subscriptions. Publishers don't lower costs, but raise them to cover lost business. More people drop them. Lather, rinse, repeat. I see either someone adjusts to reality, or go out of business.

  20. arXiv.org e-Print archive by pfafrich · · Score: 2, Informative

    Physisits have been doing something similar for ages. Have a look at http://arxiv.org/. Most phyisics papers appear here first, only later going on to paper publishers. The big bifference between the two is arXiv has no reviewing process (its for pre-prints). This does make things quicker which seems to be what physist want, but might have impact on quility of papers.

    --
    There are four sorts of people in the world: fools, lunatics, idiots and morons. - Umberto Eco, Foucaut's pendulum.
    1. Re:arXiv.org e-Print archive by opaqueice · · Score: 1

      Yes, and not only physicists - many mathemeticians publish there as well. The arxiv has been around for more than 10 years now, which makes it extremely easy to look up any paper from that period - you can access them almost instantly, free of charge, as well as do global citation searches and such. Furthermore, for the last several years many theoretical physicists have been publishing in JHEP (Journal of High Energy Physics), which is peer-reviewsd and available free of charge on the web. Since it's necessary for tenure etc. to publish in peer-reviewed journals, JHEP provides a very nice alternative to the extremely expensive paper journals. So the biologists are way behind the times...

  21. Re:Peer review and perception-Failed business mode by pphrdza · · Score: 1
    True enough. The phenomenal cost increases began in the late 70's.

    Unfortunately, when a journal leaves the market, we are all negatively impacted.

    (No, I don't see libraries as the ones going out of business. They seem to be more fluid and responsive to their market. :-) )

  22. One of hundreds by Anonymous Coward · · Score: 1, Informative
    It is always good to see competition to the publishing establishment with the launch of another free access journal. PLoS Biology now joins 541 other open access scholarly journals in the SPARC project.

    Everyone here is aware, I'm sure, that there is really no such thing as "free" in publishing. Many people and hundreds of institutions are contributing their time, resources and money trying to break the stranglehold of the entrenched publishing industry.

    The only way open access can ever really succeed is if authors choose to publish in these journals instead of the established journals. When careers and prestige are on the line, how many faculty and researchers will choose to publish their latest medical discovery in one of these free journals instead of established journals like "New England Journal of Medicine" and "Science"?

    As all of the SPARC institutions know, creating the journals is just the first step in a very long and difficult struggle. Read them, publish in them, promote them to others. And thank your librarians for providing the seedbed for all these open access journals to flourish.

  23. Perhaps they should use bittorrent? by Anonymous Coward · · Score: 0

    It seems as if they are having badwidth issues... they are serving quite large files, and no doubt bittorren would be good here, right?

  24. Why PLoS has to charge by Buran · · Score: 1

    Yes, the costs are high ... but as has been pointed out here, they have to be, at least in the beginning.

    Because PLoS is an effort to bring research to the general public or at least to more people than has generally been the case, it can't get its operating fees from charging people to view the articles online, the way Nature and Science do. Because those journals lock down their content so tightly, I can't share a paper with friends.

    For example, I'm a member of an online community that likes to talk about birds of prey, but I couldn't share a Science article with them that discussed tool use in crows, because I was the only one of the bunch who works somewhere that has a site license! And the university has paid dearly, no doubt, for it. The only way for me to do it would be to put the PDF version of the paper up for download, or send it to them directly -- legal, I think, for private discussion use as long as it's not redistributed, though I'd have to read their site before doing anything like that.

    PLoS is aiming to change that. If the same article had been published in PLoS Biology, all that would have been needed is the URL. But, they need to get funding to get themselves started. $1500 may seem steep, but not only are grants often providing hundreds of thousands, if not millions, of dollars, the $1500 cost can just be added to grant expenses. Some would balk, sure, but ...

    Some journals still charge some kind of fee to publish, in any case -- for example, to reprint color images, which is more expensive than black and white due to the costlier processes involved in reprinting in color (four inks, for example, not just one, but that's just the start.) But many authors are willing to pay the extra required for color because color has a greater impact on readers (this has been known for a long time) and because some things just can't be shown in greyscale, like two different dyes being used to tag two different proteins in the same cell.

    I think it will be an accepted expense fairly soon, and if PLoS can actually publish each article for less, and start building up a cash reserve, the costs can perhaps be lowered for those who really can't afford it.

  25. Scientists with limited funds will not be excluded by scientistguy · · Score: 1

    no ... they will work with you if you can't afford the fee. it initially gave me pause when my postdoc mentioned what the $1500 publication, but having the science freely available to others if published is worth it. in addition, they do ask that you contact them if you can't afford the publication cost (the request is within their online submission forms), and knowing a few of the people involved, i am certain that they would waive it for those who did not have the ability to cover the charge.

  26. A good thing, but not a first. by Richard+Mills · · Score: 1

    Another journal such as this that doesn't just fill the coffers of Wiley or Elsevier is a good thing. As other posters have pointed out, though, there are similar free electronic journals out there. One that I haven't seen mentioned is the Electronic Transactions on Numerical Analysis (http://etna.mcs.kent.edu), which has actually been around since 1993!

    A big problem with PLoS is that an author is charged $1500 (!!!) to publish in the journal. This is going to bar a lot of people who lack significant funding from publishing in the journal. I don't see how passing the ridiculous costs of journals from subscribers to authors is a very good fix! There are other free, electronic journals out there that don't cost anything to publish in (such as ETNA). I honestly don't know why PLoS charges so much money. The cost of running an e-journal can't be that high: authors don't get paid anything, reviewers don't get paid anything, and many editors don't get paid anything. Money for running a web/ftp server should just about cover it!

    1. Re:A good thing, but not a first. by King+Babar · · Score: 2, Informative
      A big problem with PLoS is that an author is charged $1500 (!!!) to publish in the journal. This is going to bar a lot of people who lack significant funding from publishing in the journal. I don't see how passing the ridiculous costs of journals from subscribers to authors is a very good fix!

      You just aren't thinking very hard about this then. Teh first journal in the PLoS line-up is PLoS:Biology; the vast majority of articles published here, if they really do make it the equivalent of Science/Nature/whatever *will* be published by people and labs receiving some amount of external funding. Barring that, they could probably apply for intramural funding to defray publication cost in a prestigious journal. After they get off the ground, I have no doubt that one or more philanthropists or corporate sponsors will not start shelling out for this cost. But the point is: there is a real cost to publishing science, and somebody will have to pay it.

      As far as the "who pays?" question goes, I think it should be crushingly obvious that this is a big win, especially for people who are underfunded or who come from institutions that do not have large journal budgets. So on-line institutional pricing for Nature is pretty high; I think I remember a figure like $8000 per year being bandied about. There are probably about 5000 institutions paying this fee right now, or about $40 million coming into Nature. There are tens of thousands of others who pay somethingly like $200 per year to get the same access (it can go higher, but you can always get some discount or other). Probably another $40 million or so comes in that way. That's $80 milllion spent for what I believer will work out to be 1000 or so articles. So the total subscription cost is on the order of $80,000 per article published in Nature If these had all been published in PLOS journals, the total subscriber cost would be $1500 per article. Even if I have my Nature numbers high by a factor of 10, there is still a sizable community savings by going the PLOS route. As far as how much PLOS will cost, if they get to the point where they publish as many articles as Nature (say 1000 per year), then I figure they will need an editorial staff of about 10, an office or offices for the same, and whatever their web access costs them (right now they're slashdotted; that shouldn't happen). I don't find it hard to believe that this would cost $1.5 million per year, and so I have to conclude the cost is reasonable. Funds can always be raised to cover reasonable costs.

      --

      Babar

    2. Re:A good thing, but not a first. by MacJedi · · Score: 1
      It's been mentioned above, but do note that publication fees will be waived where appropriate.

      /joeyo

      --
      2^5
    3. Re:A good thing, but not a first. by the+gnat · · Score: 1

      Some funding groups, like HHMI, will also defray costs. Regardless, as has been mentioned above, paying to have your article published (especially if you want color figures) is not all that uncommon with conventional journals too.

  27. Re:WHOOP! WHOOP! WHOOP! WHOOP! by gazbo · · Score: 0, Redundant

    I'll give you a shout when I get it on sid=100000 so you don't miss it.

  28. Still need other journals by Anonymous Coward · · Score: 1, Insightful

    As a researcher PLOS might make for a good suppliment to other journals, but you still are going to need ot other journals to get by in your research.

    You'll never see anyone who's doing research at a university or in the private sector cancel their subscription to any of the major journals, even when there's alternatives out there. They're too essential.

    It might give a regular person a chance to read up on some ongoing research, but they can already do that at the library.

    1. Re:Still need other journals by MacJedi · · Score: 1
      Never say never my friend.

      The mainstream journals are useful only in-so-far as they are widely available and widely read. The really big ones have had 100 years or more to gain momentum and get to where they are today! Journals like PLoS Biology have the potential to be FAR more widespread.

      Much like Open Source software, it is only a matter of time.

      --
      2^5
  29. Wonderful... by Anonymous Coward · · Score: 1, Interesting
    ...another journal. The only excitement here is that it is free to read, though not free to publish in.

    Before people go wild about this, remember that $1500 is actually quite a lot of money, and more than many, if not most, other journals. Physical Review D, one of the most (if not the most) respected journal in its field, for example, has no page charges. It charges $2,700 for a one year online subscription, but guess what -- if your department publishes more than one paper a year (I would say a good department publishes at least two, if not more, papers per researcher), you are far out-running Plos.

    (Indeed, if a department decided to go solely to Plos, they'd be paying $3,000 per researcher -- which is well more than most grants today allocate to page charges.)

    Physical Review Letters has a $500 page charge, one third of Plos, and PRL is the most respected "fast track" place to publish. Plos is a (as of yet) no-name journal with no track record (a Nobel prize-winner on the board is meaningless.) Why would anybody publish there?

    The only journals that people have complained about are the Elsiver series, which have been jacked up extraordinarily high -- but there are still other options, and people who publish in the Elsiver journals need to realize that poorer universities can't afford them. There is already this kind of pressure (Elsiver is also screwing up its online access and archives), and either Elsiver will change or its readership will.

    Finally, Science and Nature are rapidly becoming obsolete. They've published so many silly papers that have been "sexed up" by editors and authors alike, and they've had so many problems with meddlesome editors (in real journals, the editor doesn't get to change the wording in your paper) that it's become a laughing stock in more than one field. To compare Plos to those two is to miss the point.

    1. Re:Wonderful... by merryprankster · · Score: 1
      Finally, Science and Nature are rapidly becoming obsolete...and they've had so many problems with meddlesome editors

      At least three of the PLoS editors have worked for Nature in the past. The main editor, Vivian Siegel worked for Cell - owned by Elsevier

      But then I should imagine that when they worked for Nature they were meddlesome and published "sexed up" rubbish....now they work for a free access journal they will seen as brave, visionary and skilled.

      or could it just be that they will work for whoever pays their wages??

  30. A Keystroke Koan for our Open Access Times by harnad · · Score: 3, Informative
    The launching of PLoS Biology -- http://www Stevan Harnad Normal Stevan Harnad 2 0 2003-10-13T15:09:00Z 2003-10-13T15:09:00Z 6 866 4939 Universite du Quebec a Montreal 41 9 6065 10.2006 200

    The launching of PLoS Biology -- http://www.plosbiology.org/-- an outcome of Harold Varmus's highly influential 1999 Ebiomed Proposal -- http://www.nih.gov/about/director/ebiomed/ebiomed. htm -- is a very important event for research and researchers, for two reasons:

    (1) It is another step forward in providing open access to peer-reviewed research, a major step.

    (2) It both demonstrates and will further stimulate the research community's growing consciousness of both the need for open access and the possibility of attaining it.

    It is all the more important, therefore, that on this auspicious occasion for the open-access publication strategy (BOAI-2) we not forget or neglect the other, complementary open-access strategy, open-access self-archiving (BOAI-1) --http://www.soros.org/openaccess/read.shtml -- particularly because systematically supplementing BOAI-2 with BOAI-1 has the power to bring us so much more open-access, so much more quickly.

    A KEY-STROKE KOAN FOR OUR OPEN-ACCESS TIMES

    Here is an extremely conservative calculation that will give you an (I hope unforgettable) intuition for the importance of not neglecting the other road to open access:

    If, in addition to signing the PLoS open letter (pledging to boycott toll-access publishers unless they become open-access publishers http://www.plos.org/support/openletter.shtml), not even all the 30,000 PLoS signatories had self-archived not even all their own toll-access articles, nor even the 55% corresponding to the proportion of blue/green (self-archiving-friendly) toll-access journals -- http://www.ecs.soton.ac.uk/~harnad/Temp/rcoptable. gif-- but only the 18% of signatories corresponding to the proportion of postprint-green journals had self-archived just one of the articles they had published in just one of those toll-access journals, the resulting 5400 articles that had been made openly accessible by this act would still have been 5 times as many as PLoS Biology will publish in 5 years (1200 articles, assuming 20 articles per PLoS issue at $1500 a pop). And at the cost of only a few keystrokes more than what it cost to sign the petition.

    Yet all researchers did was sign the PLoS open letter, and then wait, passively, for toll-access journals to turn into open-access journals in response to the petition. And now researchers seem ready to wait yet again, passively, with the popular press now cheering from the sidelines, for more open-access journals like PLoS Biology to be created or converted, one by one.

    As we make our estimate less conservative and arbitrary, and scale it up first to 55% of all annual biology articles, and then beyond that, to the many journals that will support self-archiving if asked, I hope the scales will at last begin to drop from the eyes of those who have not yet noticed the tunnel vision and paralysis involved in focusing only on open-access publishing, when it is *open access* that is our target.

    And perhaps then we will be less surprised that the 23,500 toll-access publishers did not take our boycott threat seriously -- and, by the same token, that they still have no reason to take the handful of open-access journals created since the beginning of the '90s (of which PLoS Biology is about the 543rd) seriously -- if that's all we're prepared to do to demonstrate our need for and commitment to open access for our research, as we just keep sitting on our hands instead o

    1. Re:A Keystroke Koan for our Open Access Times by Anonymous Coward · · Score: 0

      You are Right On. PLOS does not stand a chance -- I mean, not only are they nobody -- but they have nothing compelling to draw any attention. Sure, open-access is / may be the wave of the future, but what here demonstrates that PLOS is committed to that model? $1,500 for a reviewed article, which gets posted to / edited into a journal that no one reads. Wow! What value! And check out the online version -- it's kind of dull, the interface is absolutely SHIT, there is nothing compelling here to draw in anyone. PLOS = STUPID

  31. $1500 only if you can afford it by Per+Abrahamsen · · Score: 3, Interesting

    If you can't afford the fee, they will lower it or even remove it. They promise paying the fee has no influence on whether the article is accepted.

    One could view the fee as a "suggested voluntary donation", however scientist are generally not allowed to spend research grants on charity. I know I'm not, I tried to make my university donate money to the FSF as a thank for the software we use. We ended up buying overpriced stuff from them instead.

    By phrasing it this way it will be a lot easier to get the payment accepted. It probably also put a higher moral pressure on the submitters to pay if they can.

    1. Re:$1500 only if you can afford it by eaolson · · Score: 1
      One could view the fee as a "suggested voluntary donation", however scientist are generally not allowed to spend research grants on charity.

      Page charges are typically requested by even for-profit journals. This appears to be an online analogue to that. Many grants have a line item for this very thing. In every journal I've published, they've been optional, but I'm not sure what percentage of researchers actually pay them.

  32. Bad for your health? by EvilGurgle · · Score: 1

    Great! Let's rush right out to the doctors getting their medical informaiton from free journals. Those guys charging thousands for real information are full of themselves. We don't need no stinking accuracy or credibility. If I can figure out how to put in my own clutch, they should be able to put in a heart or kidney with the same free information. I'm sure a doctor that's done it will post an article somewhere for free.

  33. Create two sections..peer-rev & Yet-too rev. by thenarftwit · · Score: 1

    Create two sections, first, the peer-reviewed articles, and then, another section: Yet-to-be-peer-reviewed section....Your choice (the reader), as to what section you want to read first (or at all). That way, all articles have a chance to get read, under the circumstance that a ground breaking peice of work comes along that is so radically differnt and advanced that most scientists do no want to, or won't peer review it for whatever reason, then simply put it into the as-yet-to-be-reviewed box (section), so that the readers can review it themseves. after all, good ideas survive (eventually), and even really bad ones (who knows), may be that triggering insight for someone out there who can discover the real truth or even a new tangent to a really cool idea.

  34. Great idea for destroying our economy. by Anonymous Coward · · Score: 0

    Let's give away all our scientific breakthroughs and research to other countries, so they can compete against us and take our jobs and industry. Thanks alot guys.

    1. Re:Great idea for destroying our economy. by Frans+Faase · · Score: 1

      Yes, and lets continue subsidizing agriculture in our western countries, such that we can sell food below the price of which they can be produced in third world countries, with the result that farmers in those countries will remain poor for every, and milions of children will die because of poverty till the end of time.

  35. Re:Public Libraries are important by G3ckoG33k · · Score: 0, Offtopic

    It is with great sadness I note that my quote from CNN has rececived 50% Offtopic and 50% Overrated moderations, resulting in a "Score:-1, Offtopic". No, I'm not a "karma whore", but, and that is a bloody BIG BUT - giving in to superstition, metaphysics, and supernatural beliefs in general is in no way not part of me.

    How the [please insert any popular vulgarism] do people believe information is to spread rapidly through an impoverished polulation and, as from what the CNN article insinuates, an active mob infuriated from superstitious beliefs and with blatant disregard for human rights? No, they probably don't have internet access. Yet, this may be a first step towards a better, more educated world. Nothing more nothing less. There are, as far as I can see it, no fancy strings attached to it. Just a plain, public library.

    Please, read the entire article. It IS horrifying. This is from 9th October 2003, not 2003B.C. Please read the entire article in full, again. Please. Besides, how the whats can this be Offtopic?! Here again:

    BANJUL, Gambia (Reuters) -- A 28-year-old man accused of stealing a man's penis through sorcery was beaten to death in the West African country of Gambia on Thursday, police said.

    A police spokesman told Reuters that Baba Jallow was lynched by about 10 people in the town of Serekunda, some 15 km (nine miles) from the capital Banjul.

    Reports of penis snatching are not uncommon in West Africa, with purported victims claiming that alleged sorcerers simply touched them to make their genitals shrink or disappear in order to extort cash in the promise of a cure.

    The police spokesman said many men in Serekunda were now afraid to shake hands, and he urged people not to believe reports of "vanishing" genitals. Belief in sorcery is widespread in West Africa.

    Seven alleged penis snatchers were beaten to death by angry mobs in Ghana in 1997.

  36. Linux? by Anonymous+Cowdog · · Score: 1

    >"Oh, and it's all running on Linux ;)"

    Running on Linux, are you sure? Last night I did a 404 test on it, and it came back with an IIS error message. Maybe that's why it seems to have come to its knees so easily today?

    1. Re:Linux? by Anonymous+Cowdog · · Score: 2, Informative

      Try this link:

      http://biology.plosjms.org/nosuchfile

      And you get this error which leads me to think this the site is not "all" running on Linux:

      The page cannot be found
      The page you are looking for might have been removed, had its name changed, or is temporarily unavailable.

      Please try the following:

      * If you typed the page address in the Address bar, make sure that it is spelled correctly.
      * Open the biology.plosjms.org home page, and then look for links to the information you want.
      * Click the Back button to try another link.

      HTTP 404 - File not found
      Internet Information Services

      Technical Information (for support personnel)

      * More information:
      Microsoft Support

      ==============

      BTW I'm using Mozilla Firebird, so I know this error message is coming from the server, and not being rewritten by my browser as IE tends to do.

  37. Is this site running Microsoft's IIS, or what ?!? by ivi · · Score: 1


    Here's the text of the page I got when
    I tried to download the PDF's for the
    article on monkeys that can operate a
    game without moving their hands:

    "The page cannot be found

    The page you are looking for might have been
    removed, had its name changed, or is
    temporarily unavailable.

    Please try the following:

    Make sure that the Web site address displayed
    in the address bar of your browser is spelled
    and formatted correctly.

    If you reached this page by clicking a link,
    contact the Web site administrator to alert
    them that the link is incorrectly formatted.

    Click the Back button to try another link.

    HTTP Error 404 - File or directory not found.
    Internet Information Services (IIS)

    Technical Information (for support personnel)

    Go to Microsoft Product Support Services and
    perform a title search for the words HTTP and
    404.

    Open IIS Help, which is accessible in IIS
    Manager (inetmgr), and search for topics
    titled Web Site Setup, Common Administrative
    Tasks, and About Custom Error Messages."

    I thought it was to be running on Linux.

    Maybe this explains part of the reason for
    the $1500-to-publish-here fee... ;-)

  38. Re:Is this site running Microsoft's IIS, or what ? by ivi · · Score: 1

    FYI, here's the URL of the document we tried to get,
    that brought the 404 message [from MS IIS?]:

    http://www.plosbiology.org/pips/plbi-01-02-S-carme na.pdf

  39. Re:Is this site running Microsoft's IIS, or what ? by ivi · · Score: 1


    > the URL of the document we tried to get,
    > that brought the 404 message [from MS IIS?]:
    >
    > http://www.plosbiology.org/pips/plbi-01-02-S-carme na.pdf

    (no was in the URL we used; & 'don't
    know why one appeared in our reply-post...?)

  40. Peer Review solution is obvious! by tonythejuice · · Score: 1

    Just give the scientists the code for /. The success of /. is owed to the user-driven review system. Scientific Journals should follow the example.

  41. The real issues of PLoS by cc511 · · Score: 1

    Unfortunately, being that money does not yet grow on trees, the money to publish in an open access journal such as PLoS Biology has to come from somewhere. If you look at the fine print of the great majority of journals, there will be a little statement about the publication qualifying as advertisement, because the author had to pay page charges. These charges come out of grant money, and major funding agencies such as the NIH, NSF, and Wellcome Trust have already approved publication charges for open access journals (which, by the way, your taxes paid for these agencies to fund the research to begin with). To then read the journal, you have to pay again. In fact, most of the comments out of the publishing community towards the PLoS journals insist that the $1500 charge is not nearly enough to cover the costs of publishing. Economics and career risk has been the largest concern with the survival of PLoS, not the peer review process.

    With people such as Harold Varmus (Nobel Prize in Medicine 1989 "discovery of the cellular origin of retroviral oncogenes") and James Watson, and recruiting former editors of the high profile journal Cell the quality is not likely to be the greatest concern. Besides the economics of running an open access journal, many young scientists, whose careers are still in the making, would be hard pressed to give up the opportunity to publish in Nature or Science, to hold their "moral" ground and publish in PLoS. But it only takes a few to get the ball rolling... Pat Brown (one of the founders of PLoS) and several other authors names were removed from an article in the New England Journal of Medicine, because the journal edited out a sentence pertaining to access and retention of copyright. There were two good commentaries/news in the last two issues of Nature on the NEJM article and PLoS economics, however being that they were published in Nature (whose articles from fifty years ago are still kept closed access), you will have to pay to see them.( I think this will run you approximately $10-30 per article)

    Here are the links for those of you who have access:

    Nature:Open Access
    NEJM fall out

  42. About Time by Anonymous Coward · · Score: 0

    Traditional Science Journals cost too much, which limits scientific review, especially in poorer countries. http://www.jamessherman.net

  43. Game Over, STM Journal Complex by deathofcats · · Score: 0

    It's really great to hear this news about PLoS, because it looks like all the barriers to open scientific publishing have finally been surmounted. I worked several years ago for Science magazine and at that time we were very concerned about the Internet's impact on science publishing. We took some real risks in making Science available online and we approached the issue of institutional site licenses with much trepidation and lots of research. I remember sitting around meetings where we talked about why Nature was dragging its feet on online institutional subscriptions and other meetings where we talked about efforts such as PubMed and other forerunners of PLoS. We really didn't know how to price Science Online for libraries, but we ended up making money only to lose lots of money when scientists started dropping their subscriptions to the print magazine.

    I remember doing some research at the time into open archives, an idea that I had always liked for political reasons unrelated to my job. I concluded that the main barrier to the acceptance of open archive journals revolved around tenure and resume stuff. If employers looked at publishing in open access journals as the same as being published in a print publication, then scientists and researchers would have less reservations about publishing in open access journals. Stuff like peer review for open access journals are problems that can be easily solved using existing technology, but changing the attitudes in universities and libraries is the main obstacle.

    Here's hoping that PLoS and similar projects succeed and start replacing the obsolete journal industry. If it hurts Elsevier, then it has to be a good thing.

  44. Suckers. by dnahelix · · Score: 1

    money spent on subscriptions to commercial journals that can cost thousands of dollars a year

    --
    Slashdot Eds Link Anonymous Posts With Logged Posts
    They Are Vermin Feeding On Each Other's Feces.
    I Hate \.
  45. Re:Running on Linux? by Anonymous Coward · · Score: 0

    that's funny your wife told me the same thing

  46. Deep Disanalogy Between Open-Access & Open-Sou by harnad · · Score: 1

    Source:
    http://www.ecs.soton.ac.uk/~harnad/Hyperm ail/Amsci /2967.html

    On the Deep Disanalogy
    Between Text and Software and
    Between Text and Data
    Insofar as Free/Open Access is Concerned

    Stevan Harnad

    It would be a *great* conceptual and strategic mistake for the movement
    dedicated to open access to peer-reviewed research (BOAI)
    http://www.soros.org/openaccess/ to conflate its sense of "free"
    vs. open" with the sense of "free vs. open" as it is used in the
    free/open-source software movements. The two senses are not at all the
    same, and importing the software-movements' distinction just adds to
    the still widespread confusion and misunderstanding that there is in
    the research community about toll-free access.

    I will try to state it in the simplest and most direct terms possible:
    Software is code that you use to *do* things. It may not be enough to
    let you use the code for free to do things, because one of the things you
    may want to do is to modify the code so it will do *other* things. Hence
    you may need not only free use of the code, but the code itself has to
    be open, so you can see and modify it.

    There is simply *no counterpart* to this in peer-reviewed research
    article use. None. Researchers, in using one another's articles, are
    using and re-using the *content* (what the articles are reporting), and
    not the *code* (i.e., the actually words in the text). Yes, they read the
    text. Yes (within limits) they may quote it. Yes, it is helpful to be able
    to navigate the code by character-string and boolean searching. But what
    researchers are fundamentally *not* doing in writing their own articles
    (which build on the articles they have read) is anything faintly analogous
    to modifying the code for the original article!

    I hope that that is now transparent, having been pointed out and written
    in longhand like this. So if it is obvious that what researchers do with
    the articles they read is not to modify the text in order to generate a
    new text, as programmers may modify a program to generate a new program,
    then where on earth did this open/free source/access conflation come from?

    And there is a second conflation inherent in it, namely, a conflation
    between research publishing (i.e., peer-reviewed journal articles) and
    public data-archiving (scientific and scholarly databases consisting of
    the raw and processed data on which the research reports are based).

    Digital data archiving (e.g., the various genome databases, astrophysical
    databases, etc.) is relatively new, and it is a powerful *supplement*
    to peer-reviewed article publishing. In general, the data are not *in*
    the published article, they are *associated with* it. In paper days, there
    was not the page-quota or the money to publish all the data. And even
    in digital days, there is no standardized practice yet of making the raw
    data as public as the research findings themselves; but there is definite
    movement in that direction, because of its obvious power and utility.

    The point, however, is this: As of today, articles and data are not
    the same thing. The 2,000,000 new articles appearing every year in the
    planet's 20,000 peer-reviewed journals (the full-text literature that
    -- as we cannot keep reminding ourselves often enough, apparently --
    the open/free access movement is dedicated to freeing from access-tolls)
    consists of articles only, *not* the research data on which the articles
    are based.

    Hence, today, the access problem concerns toll-access to the full-texts
    of 2,000,000 articles published yearly, not access to the data on which
    they are based (most of which are not yet archived online, let alone
    published; and, when they *are* archived online, they are often already
    publicly accessible toll-free!).

    No doubt research practices will evolve toward making all data
    accessible to would-be users, along with the