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Plants May Be Able To Correct Mutated Genes

ddutt writes "NY Times is running a story that talks of an exciting new discovery, which, if confirmed, could represent an unprecedented exception to Mendel's laws of inheritance. The discovery involves.. 'plants that possess a corrected version of a defective gene inherited from both their parents, as if some handy backup copy with the right version had been made in the grandparents' generation or earlier.'"

24 of 363 comments (clear)

  1. How this impacts evolutionary theory by AKAImBatman · · Score: 5, Interesting

    FWIW, the paper this morning was pointing out how this discovery might leave a gaping hole in evolutionary theory. The crux of the problem is that "micro-evolution" as it were, is dependant on an organism's ability to mutate from generation to generation. If a mechanism exists that prevents or corrects mutations across generations, then the theorists may *again* have to go back to the drawing board.

    Isn't it amazing how the more we know, the less we know? :-)

    1. Re:How this impacts evolutionary theory by cot · · Score: 5, Insightful

      This would only be true for these specific plants and only if this mechanism ALWAYS prevented mutation.

      If these conditions applied to us, we wouldn't have cancer.

      --

    2. Re:How this impacts evolutionary theory by AKAImBatman · · Score: 4, Interesting

      If these conditions applied to us, we wouldn't have cancer.

      Cancer is caused by a DNA mutation that your body failed to correct. Errors are extremely common. The only reason why we survive is our body's repair mechanism. In the case of these plants, neither parent had a correct gene. Without a backup copy, there should have been no way for the gene to revert. Yet it did, so we're left with an odd conundrum. :-)

      That's not to say that the theories behind mutations are all wrong, but we could be seeing something akin to problems with Newtonian physics.

    3. Re:How this impacts evolutionary theory by DogDude · · Score: 4, Interesting

      And just to add to your post, from what I understand from all of my doctor/veterinarian friends, cancer in the human body, at least, is quite common. We are simply able to, like with virus and bacteria based diseases, able to fight them off/correct them before they get out of hand. Full blown "Cancer" only happens when these problems get out of control, and the body can no longer contain/fix them.

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      I don't respond to AC's.
    4. Re:How this impacts evolutionary theory by rob_squared · · Score: 4, Insightful

      Exactly, science doesn't work like that. If a part might be, or is, wrong, that doesn't invalidate the entire theory necessarily. Evolution is somewhat like gravity. We have all this obvious evidence, but the underlying stuff is kinda misty. Newton knew gravity existed and made some nice laws. Einstein said why those laws work. String theory is a more comprehensive way of explaining Einstein's theories. Science changes, because it needs to.

      --
      I don't get it.
    5. Re:How this impacts evolutionary theory by shawb · · Score: 4, Informative

      Think of it this way: this ability stems from a mutation in and of itself. All that it does is checks for a flaw in a certain sequence and fixes it. Probably this particular sequence has a high probability of being detrimentally mutated, and so having the repair mechanism makes it more likely that when the mutation happens, it won't kill the whole organism.

      An organism repairing it's own DNA is not unheard of. There are certain somatic (IE: not passed down from generation to generation) mutations and other varieties of DNA damage that lead to cancer. There is a mechanism in place to replace these mutations with another copy. The body also has a way of detecting and removing some viruses and retroviruses that have embedded themselves in the DNA of the host organism, to a limited extent.

      --
      I'll never make that mistake again, reading the experts' opinions. - Feynman
    6. Re:How this impacts evolutionary theory by feepness · · Score: 5, Insightful

      Full blown "Cancer" only happens when these problems get out of control, and the body can no longer contain/fix them.

      Furthermore, if lethal cancer occurs once you are past child-bearing age (around 30 up until recently), it isn't such a "bad thing" for the species. Once you've reproduced, evolution is done with you.

    7. Re:How this impacts evolutionary theory by thefirelane · · Score: 4, Insightful

      There are certain somatic (IE: not passed down from generation to generation) mutations and other varieties of DNA damage that lead to cancer. There is a mechanism in place to replace these mutations with another copy. The body also has a way of detecting and removing some viruses and retroviruses that have embedded themselves in the DNA of the host organism, to a limited extent.

      This is true, but everything you describe is where the organism detects genetic changes when it has a clear copy of the 'good' genes elsewhere. In the case of cancer... one cell mutates, but all the others still have the good DNA. The thing that makes this case so interesting, from what I understand, is that the entire organism had the new DNA so what would it compare against... (no I didn't read the article yet)

    8. Re:How this impacts evolutionary theory by harvardian · · Score: 5, Informative

      Your explanation is fairly on the mark, and I'd mod it up except that I want to participate in the discussion.

      The thing that's so remarkable about this case is as you said: BOTH alleles of the gene of the plant were defective as inherited from their parents, and yet they somehow reverted to an allele from the grandparents, across the entire organism. According to current theory, sexual replication causes a kid to inherit one allele of each gene from each parent (and by "theory", I mean you can watch this happen under a microscope). If both alleles received are "faulty" (which is a sticky term to use in many cases), there's no known way for a newly fertilized cell to know this. There's no information about what the correct gene should look like except the two copies of the gene it has. In cancer, as you point out to address the parent post, there is always a source of information used to correct the mutation.

      In the case of UV damage, information exists in the form of two fused thimidine molecules (two T's). If a cell sees two fused T's, it has a repair mechanism for correcting them. But, importantly, if this mistake is not corrected before DNA duplication occurs, then random bases are paired with the T's, because they're damaged. Once this happens, each daughter cell has lost the information required to correct the problem, and the mutation persists. If this happens in an unlucky spot, you can get melanoma.

      In the case of other more serious damage, like double-stranded breaks, your cell pulls in the other copy of your genes and edits against that. The information needed for repair is the "good" copy of the allele in the sister chromosome.

      So you can see why this is so confusing -- in the case in the article the daughter cells, with two bad alleles for the gene they studied, are supposed to have no information pointing them to the gene from the grandparents. And yet they did, since they were able to fix it. The article postulates that this could be because a THIRD copy of the gene exists as RNA that's passed down from the grandparents (third since there are two chromosomes, each with a copy of the gene). If this were true, then the RNA would be the source of information required to fix the problem. Alternatively, there could be a specific protein that hunts down mutations in this gene and somehow fixes it, since it somehow bonds only to the correct version of the gene. But that's just my wild speculation.

    9. Re:How this impacts evolutionary theory by logpoacher · · Score: 4, Insightful
      One counter-argument might run that although we might be going downhill fast in evolutionary terms, we're also going uphill very fast technologically.

      Doesn't matter how dumb the primordial organic neuroprocessor is when it's been augmented with a Cyberdyne Systems omni-intelligent prepare-to-be-assimilated super jewel. Or, translated into Earth-speak, in the time-frame that these problems might become manifest, we might be able to fix them, or make them irrelevant.

      Now, the above argument can be fired at all sorts of things where people might prefer to sit on their asses rather than fix something - the environment, for example! - but it raises an interesting point: if you don't like the Hope-We-Can-Fix-It answer, then just what alternative solution do you propose?

      We can't exactly just turn people away from hospitals; I don't think we want our government to start imposing sterilization orders on "stupid people". So the study that you propose isn't gonna result in any useful action - is it? Except that if it revealed what you suggest, it would just be used as ammunition by people who want to control everyone. And therefore, even if it's true, it isn't actually anything we want to have sanctioned!

      BTW, I'm not arguing against you here - it's pretty likely, in my view, that our capabilities and societies are acting pretty anti-evolutionarily, as you say. It's debatable about how strong such influences are - the nature vs nurture debate and so on - but even assuming that the influences are strong, I'm not sure what a decent humanitarian society can do about it.

      Apart from develop yet more remedial technology...

  2. Yous a vine muthafucka! by heauxmeaux · · Score: 4, Funny

    Back that gene up!

    --
    Beat 'Em and Eat 'Em
  3. Parity bits? by aristus · · Score: 4, Funny

    ECC DNA? That's pretty damned cool. hard to believe we hadn't suspected that before.

    --
    Sometimes seventeen/Syllables aren't enough to/Express a complete
  4. Plant Superheroes! by The+Amazing+Fish+Boy · · Score: 5, Funny

    I'm gonna start putting my cactus near my spider plant and praying for some of that mutated gene action.

    OK, OK... and some hot plant-on-plant action.

    OK, OK... and some hot plant-on-plant-on-me action.

  5. Oh, that's going to be a problem by Dark+Paladin · · Score: 4, Funny

    Odds are, now the grandparent plants are going to have to sue the grandchildren plants for having "stolen" their copyrighted and patented genetic code. As we've learned from Beatallica and Dangermouse, mixing older generations of information to recreate it anew is against the Laws of Copyright Nature.

    Who gave these plants permission to make backups of their grandparents material? I mean - really!

    OK - seriously, this is a fascinating idea, one that hopefully is indeed correct and can be explored. With this information, perhaps 20 years from now we can correct genetic abnormalities by having fetuses fix themselves. Kudos to the researchers for their hard work.

  6. Makes Sense by latent_biologist · · Score: 5, Insightful

    Most Plant genomes are crazy complex. Besides that, polyploidy is often the norm in plant chromosomes. With that much genetic material to work with, i guess you'd be bound to find a 'do-over' someplace.

  7. Also on New Scientist by jwgoerlich · · Score: 5, Informative

    New Scientist has coverage. No registration required.

    http://www.newscientist.com/article.ns?id=dn7185

    J. Wolfgang Goerlich

  8. I'm pretty close to this research... by Marx_Mrvelous · · Score: 4, Interesting

    My wife was second author on this paper, and did quite a lot of the research! I guess that blows my cover ;)

    This really is no joke, these results are really exciting! I suggest everyone read the article.

    --

    Moderation: Put your hand inside the puppet head!
  9. Re:Planet RAID. by Savage-Rabbit · · Score: 4, Funny

    It's just plants copying RAID or PAR files. This is nothing new - we've had those for years now.


    Copying? If it bothers you so much you can always sue them for patent infringement. Of course the plants might lawyer up and come back at you claiming prior art....

    --
    Only to idiots, are orders laws.
    -- Henning von Tresckow
  10. No, not really by Anonymous Coward · · Score: 5, Informative

    For the people who, ah, read the paper, if this particular gene (HTH) is mutated, then a whopping 5% of the second-generation genes manage to revert to the wild type. The other 95% are still mutant. So this mechanism (which is normally masked by the presence of a normal HTH gene) provides for a small number of mutant offspring to revert to wild type, so that a deleterious mutation won't completely destroy the population it occurs in. To disprove "micro-evolution", you'd have to show that this mechanism used to be turned on in every organism and operated at ~100% efficiency rather than 5%. Don't bet on it.

    Now, this is definitely a pretty cool discovery, and there's going to be a stampede of people hunting around looking for some sort of, say, RNA copy of the genome hiding somewhere in Arabidopsis, and there will be a lot of fun in epigenetics. But it isn't going to destroy evolutionary theory, although I expect creationists (excuse me, "intelligent design theorists") will be running around for decades insisting that because this phenomenon exists, it's impossible for mutations to happen.

  11. the plants don't actually "correct" mutations... by xlurker · · Score: 5, Informative
    just heard this report on NPR.

    What was reported is that although there were mutations in the DNA of the plant, its siblings didn't have them anymore. The researcher said that the best theory at the moment is that the non-mutated DNA was coming from the RNA of the plant. IANAB, but I think RNA usually is though to serve only a functional "middle man" role betweeen the genetic code and the cell machinery, and not actively involved in reproduction...

    He did not say that the plant was actively fixing its DNA for its offspring.

    The non-mutated RNA was itself directly inherted from the parents. In a way the RNA has become a bad backup copy of the DNA. That's the present theory... I guess this is what they'll start looking for... "Bad backup copy" since still 90% of the offspring of the plant still contained the mutated DNA.

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    ______________________________________________
    sigamajig...
  12. Backup Copies Exist for Many Genes by jestill · · Score: 5, Interesting

    My lab does research on plant genomics, and we are involved in research concerning the duplication of genes in the plant discussed in the article.Many of the genes that a plant has exist in multiple copies and that is not a new idea. We can follow the evolutionary history of these duplicated copies and show that they often arise from duplication of the entire genome followed by selective genome loss. We also frequently find that single genes are duplicated by themselves, or that entire segments of a chromosome may be duplicated by the process of 'segmental duplication'. The interesting thing here is that the scientist believe that a second copy of the gene does not exist as a DNA copy, but as an RNA copy. That is an interesting hypothesis, that will need to be explored further.

    --
    "Asleep at the switch? I wasn't asleep, I was drunk!" -- Homer
  13. Re:Intelligent Design by MightyMartian · · Score: 4, Insightful
    Why it so unacceptable to introduce the idea of "Intelligent Design" when everything about life is so structured and orderly?

    Let's see:

    1. Things aren't so structured and orderly. Look at your own body. Anybody who designed such flawed systems as knee joints and eyes with blind spots ought to be fired, if not outright charged with criminal negligence. Living organisms demonstrate the slow march of blind evolution, with functions and organs being co-opted for other purposes, and not being calibrated for ultimate efficiency. As much as anything else, organisms tend to look like compromises, and not optimal designs. They certainly don't resemble entities that we observe to be designed.

    2. How could science ever pursue something like "Intelligent Design"? Who is this designer? Where did they design life? What forces did it/they bring to bear? How can a researcher hope to falsify any particular claim about the designer? These are the sorts of questions that must be answered, and in reference to evidence that can actually be gathered. That is how science functions.

    Why is chance so much more believable?

    This sentence betrays some substantial misunderstanding of evolutionary theory. Evolution is not pure chance. Mutations themselves are likely to be so, but the selective processes are not random.

    As well, what does "believability" have to do with it at all? Science follows the evidence, not the conceits and sensibilities of people. Imagine going back in time 5,000 years and telling some Mesopotomian that Earth is a sphere that orbits the sun, which itself orbits the central mass of a vast galaxy with billions of stars, which in turn is itself only a rather ordinary member of a vast cluster of galaxies. That you cannot imagine (or refuse to imagine) something to occur is not an argument against it, but merely fallacious thinking.

    --
    The world's burning. Moped Jesus spotted on I50. Details at 11.
  14. Order of credit by tlambert · · Score: 4, Interesting

    Credit order generally boils down to:

    (1) Who got the grant
    (2) Who has the most tenure
    (3) Who went to the meetings
    (4) Who wrote the paper
    (5) Whoever is politically in and most needs a paper credit to keep on tenure track
    (6) etc.

    Actually doing work tends to come dead last. Sometimes (as some recent scandals have shown), it doesn't come at all.

    Also, realize that to a scientist, it's not about the credit for getting something done, it's about the fact that it needed to be done, and someone did it.

    For every scientist popularized by the media, there are thousands of them of whom almost nobody has ever heard, but who were critically important for fundamental things we take for granted every day.

    For example, some of the first posts in this thread were going on about retrying the Scopes "Monkey Trial" vs. Darwinian evolution, when most biologists today know that the currently accepted evolutionary theory is Jerry Pounelle's "Punctuated Equilibria", and Darwin is generally only taught for having come up with, and written about, the idea of change in species over time.

    -- Terry

  15. Re:So what happens to gentically modified plants? by Artifakt · · Score: 5, Informative

    A lot of genetically modified plants will be selected against where they escape into the wild. Golden Rice, for example, uses a lot of energy making Beta Carotine, that is, (from the plant's view), wasted. When its seeds get cross fertilized by wild rices the genes tend to be weeded out in the wild areas quite rapidly. Rice has generations lasting a year or less, and it's been estimated that the genes are 99% gone within 10 years. Even in cultivation, farmers have to suplement their seed stock saved from the last harvest with new purchases of fresh Golden Rice every few years to keep the yields up.
    That's not mutation as you've described, it's natural and artificial selection, but so long as there are unmodifed plants in the same areas as the GE ones, it tends to work that way, as the vast majority of GE features are disadvantagious under natural selection, and a lot of them are so disadvantagious they require real rigor to preserve via artificial selection. They're like Pekinese dogs in the wild.

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    Who is John Cabal?