Open Source, Genetically Engineered Machines From a Kit?
An anonymous reader writes "Students in an MIT competition are helping to build a dev-kit for cells. Together with synthetic biologists, they're building a Registry of Standard Biological Parts called BioBricks. They aim to do for cells what open source software has done for computers. 'The competition is a showcase for the burgeoning field of synthetic biology. Knight and his colleagues Randy Rettberg and Drew Endy, who created the contest in 2004, want to make biological systems easy to build by applying the tools of computer science and engineering: using standard parts and modular design to simplify complex systems. The goal is to create "genetic Legos" that could produce any chemical, from ethanol to pharmaceuticals.'"
Sweet. I can think of a few.
thegodmovie.com - watch it
I had a genetics prof in 2002/2003 some time, that said this kind of thing was at least 40 years off...
I would love to stick this web page in his face.
Self proclaimed typo king, and inventor of the bear destroying coffee table (patent not pending).
the already patented parts?
for 'Shaping 101'?
...vividly encapsulates that post-Watergate/pre-punk/coked-up moment when you could trust no one, least of all yourself.
BioBricks? But 'Plasmid' and 'tonic' have such nicer rings to them...
I just hope that these basic "programming" blocks do not turn out to be Windows.
A biowarfare construction kit distributed to the masses.
Now that they've released it under open source, God is going to sue them for copyright infringement.
It is dangerous to be right when the government is wrong.
Imagine creating toothpaste that when combined with mashed up peanuts (salted) becomes an explosive?
On a lighter note, do you think they can turn lead into gold? I hear Ron Paul would like to have some more of it to back the dollar?
Support NYCountryLawyer RIAA vs People
So the old 2 horny boys and a chemistry set scenario can finally come to pass.
What is this crap about a license taking months to produce and release? They should just release it with a license saying everything made with the kit is in the public domain, with the single exception to that disclaimer of all rights that any derivative must also come with that license. Why would it take more than 5 minutes to agree to release that license, and release it?
When some university comes after me for metabolizing glucose as part of my job (moving a muscle during business hours, just like you sometimes do), I don't want to have to argue about some license they've got on some DNA they synthesized.
All these patents on discovered genes are the purest BS violation of prior art. Any complexity in this BioBrick Public License will create more problems than it could ever solve.
--
make install -not war
upside: any elicit drug, or pharmaceutical intellect property drugs, can be made
downside: hello nerve gas
results: all of the pluses and minuses of free computer code manipulations we are familiar with (intellectual property meltdown, hackers, etc.), replicated in the world of biochemistry. except this time, the script kiddies are playing with petri dishes
what took an entire universy research department, with all the pcr machines, southern blots, grad students, etc. 10 years ago, will 10 years from now be on the workbench of high school students
i'm all one for the relentless march of technology, and there is no putting pandora back in the box, but this leaves me feeling queasy
maybe it's just the GM wasabi in my sushi
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
I'm just thinking of the applications for household pets...
Dwarf elephants the size of kittens. Basselopes. Maybe even unicorns...
I saw a talk by Tom Knight recently about BioBricks. It's a cool concept.
Some interesting points I remember from the talk:
- His lab and others like it are trying to take the craft out of manipulating cells and make it an engineering discipline.
- They've got ready-made kits of cell building blocks that you can piece together like Legos, and are adding thousands of new ones each year.
- Cells are enormously more efficient at storing information that we can in silicon - 5 or 6 orders of magnitude more dense - but most cells aren't good at writing new data, just reading it.
- Cells are really good at making precise structures at the atomic level, but our mechanical processes rely on statistics and probabilities to get things right. The smaller the structures get, the more a small statistical variation can really mess things up. Carbon nanotubes are much-hyped, and guess what's really good at making carbon structures?
- Another useful critter that was created for the last competition detected arsenic in water. The best manufactured/chemical solution costs is tens of dollars per test; using these kits, undergraduates from Edinburgh created something over a summer that is so cheap the bottles to put it in are the dominate cost.
Hmmm...
I was thinking CH3CH2OH
Would these open source cells run linux.
to prevent dupes.
Zzzz.
I read about this... what? A couple of months ago?
Announcer: Hey kids! How would you like a chemistry set for Christmas?
Kids: BOR-ING!
Announcer: A ray gun?
Kids: BOR-ING!
Announcer: How about the new amazing Bio-Bricks!
Kids: COOL!!!!!
Announcer voice-over with kids in background hunched over a petri dish full of Bio-Bricks: With Bio-Bricks your kids will have hours upon hours of enjoyment creating new life forms. Bio-Bricks are available at fine genetic research supply stores everywhere.
Announcer reading legal disclaimer:
Neither the International Genetically Engineered Machines Competition, MIT, Bejing University, or the government of China is responsible for improper use of Bio-Bricks. Serious injury, mutations, illness, death, or the end of life on Earth may result from improper use of Bio-Bricks. Using Bio-Bricks to create dangerous life forms is not recommended. Adult supervision required.
Knowledge is how to play a game, intelligence is how to win, wisdom is knowing what game to play.
Money is a piece of paper backed by the full faith and credit of the government of the United States.
I'm not saying it's worth more than a piece of paper, only that it is more than a piece of paper.
Knowledge is how to play a game, intelligence is how to win, wisdom is knowing what game to play.
So, can I use this to make my very own Kelly LeBrock?
to create an Orc. So please include the pig and human modules please...
I can't mod this thread.
Knowledge is how to play a game, intelligence is how to win, wisdom is knowing what game to play.
I don't think about it a whole lot, but back in my mind, I've thought that this is what will kill off all humans on the planet before the end of my natural life. Once you have cheap, easy engineering of microbial life, then all it takes is exactly ONE maniac to design a transmittable disease that will wipe out everyone.
Don't think anyone would do that? Look at some of the more rabid environmentalists who think the worst thing that ever happened to Earth was humanity. Theodore Kaczinsky was a genius, and with only a slight modification of his psychosis, he would've been a guy who would've thought about wiping everyone out.
Designing a disease like this would be almost pathetically simple with the right tools. Design it to be extremely infectious, but with an incubation period of 10 years before it starts killing. By the time people start dropping dead, it will be everywhere. 99% of everyone would be dead within months.
I honestly don't see how it could NOT happen -- eventually. Yet another reason why we need to get people into space habitats.
If any technology should be tightly controlled, this is it.
Sometimes it's best to just let stupid people be stupid.
When you read it, it seems like some genious kid could be able to create dinasour like creautures out of a bunch of fundamental molecules.
I think open-source like genetic engineering must be much more different. Though being no expert on this, I really don't believe what they can synthesize is not much more than the simple (and boring) organic molecules, I needed to memorize in high-school. ( Yeah, they were teaching organic chemistry in high-school back then)
If they were so cabaple of playing with the source code of biology, I bet they could have beaten the little, evil, less than a bacteria-sized virus called the HIV.
There's plenty of room at the bottom! Richard P. Feynmann
What happens when someone uses the wrong block in the right spot by accident? Giving the tools to people that aren't able to understand the possible side effects could be dangerous. Not everyone has a containment level 3 facility in their basement.
My daughter was born three months ago. My wife jokes, "She won't be allowed to date until she's 25!" I always add, "Yeah, and not until after she gets a PhD in Programmable Genetics..."
:)
I was only half kidding. Now I'm not kidding at all.
cool when can we expect the human SDK?
will I be able to upload my own designs for a new Leg to the git tree
hey for that matter build your own git
(english reference there)
...this will stay legal for what? Five minutes? As soon as they're successful, this is going to be locked up tighter than a drum (as an old employer used to say). There won't be any namby pamby warm and fuzzy open community feelings for long. I see the end result being collusion by big pharma and their de-balled government lackies to outlaw this. Especially if it would mean "illegitimate" alternatives to big pharma. The companies that make medicine today aren't here to cure you. They're here to make a profit. And it that means making you and keeping you just sick enough to keep coming back for more, you can bet they won't want competition from people who actually might have your best interests at heart.
-"...bad old ideas look confusingly fresh when they are packaged as technology" - Jaron Lanier (Digital Maoism on Edge.o
It occurred to me that maybe this is a classic case of a mixed metaphor, and that circletimessquare meant "putting the genie back in the bottle" instead of "putting Pandora back in the box."
I am close to this field of "synthetic biology", but unfortunately BioBricks (and other such efforts) are not as impressive as some might believe them to be. They are not 'serious biology', yet. What they are excellent for is recruiting more students to biology, which is really great! Really, a lot of these "bricks" came from DNA plasmids people have been using for years. Some of them are just being rounded up and rebranded (as "genetic Legos" with names like BBa_J06504, or BBa_J06505). Think about it for a moment. There is nothing truly groundbraking here. This effort is sort of like rounding up all the crumbs on the table, throwing in some skittles, and then with your recipe being able to bake your own unique fruitcake. The end product may or may not be palatable. (And if you choose to invite Chef Ramsey for a tasting, first he'll ask you if you're serious - then he'll smack you over the head).
I think your genetics prof had something else in mind when he was looking 40 years into the future.
P.S. BTW - I am not your genetics prof. I do believe, however, that 40 or even 20 years from now, biology will be even more exciting than it is now.
...I, for one, welocme our synthetic Bio-Lego-lical overlords!
See that long UID - that's what you get for lurking too long
Don't they already have cells that can produce ethanol? I believe they are called "yeast"...
I too work in this field, and 20-40 years off isn't a bad guess for when we will be able to start doing really cool stuff.
And like the other anon said, these bricks aren't that amazing yet.
Expressing fusion proteins off a plasmid is not new.
there's no reason to make bottle rockets
there's no reason to make napster
there's no reason to master electronic sampling in music
do you really think a teenager finds nothing compelling about a quick and easy way to make any chemical he wants in his gym locker?
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
Angel: This is Angel. ...Blessed... ...by the Treasury Wizards.
Angel: This is Angel.
Angel & Angel: We are the Android Sisters. What is your question?
Caller: All of reality exists in our minds. Is that true?
Angel: What is your intelligence rating?
Caller: I'm classified as a 5.5555.
Angel: You understand we only speak to you on the level you can comprehend.
Caller: I appreciate that.
Angel: For those of you watching out there, adjust your I-T rating to...
Angel & Angel: 5.5555. What is your question?
Caller: I already asked it.
Angel: What is your question?
Caller: I said, I already asked it.
Angel & Angel: What is your question?
[beat]
Angel & Angel: What is your question?
Caller: All right, I want to know if reality is in my mind or is it out there? I mean, what if it's all in my mind? I mean, change my mind I could change reality: right; wrong; what? I'm confused.
Angel & Angel: Dear Confused.
Angel: Briefly, reality is merely what everyone agrees is real.
Angel: What everyone agrees is not real does not exist.
Caller: Who programmed you?
Angel & Angel: Who programmed you?
Caller: How should I know? Everyone. I don't know. I'm still confused.
Angel & Angel: Dear Still Confused.
Angel: You are confusing the symbol for reality.
["Reality"]
Angel: Money is a good example.
["Money"]
Caller: What about money? I like money.
["Money money"]
Angel: I will use two pieces of paper as an example.
Angel: Can you see this?
Caller: I see one piece of paper. The other is money.
Angel & Angel: Two pieces of paper!
Caller: What?
Angel: Here are two pieces of paper.
Angel: Both the same size.
Angel: Both just paper.
["Paper"]
Angel: Humans are obsessed with money.
["Money money money money"]
Caller: Not all humans, just some of us. Most of us.
Angel: One piece of paper is worth 500 Solar Credits.
Angel: The other is worthless. Not even worth a Solar Centavo.
Angel: Do you know why?
Caller: Sure. One is a piece of money, the other is a piece of paper.
Angel & Angel: They are both paper.
Caller: Yeah. Right.
Angel: One has been...
Angel & Angel:
Angel:
Angel: The other has not.
Caller: That's it?
["That's it."]
Angel: The symbol is controlling your mind.
Caller: Mmm. I see.
Angel: Oh, our time is up.
Angel: This is Angel.
Angel: This is Angel.
Angel: We are the Android Sisters. Until next time.
Oh, say does that Star-Spangled Banner entwine / The myrtle of Venus with Bacchus's vine?
why the hell do you think your spelling/ grammar/ greek mythology nazi ways are going to impress me?
why the hell do you grammar nazis try so hard?
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
From The US Treasury Web Site: Federal Reserve notes are not redeemable in gold, silver or any other commodity, and receive no backing by anything This has been the case since 1933. The notes have no value for themselves, but for what they will buy. In another sense, because they are legal tender, Federal Reserve notes are "backed" by all the goods and services in the economy. They are backed by collateral, some but not all of which are gold certificates: Congress has specified that a Federal Reserve Bank must hold collateral equal in value to the Federal Reserve notes that the Bank receives. This collateral is chiefly gold certificates and United States securities.
Knowledge is how to play a game, intelligence is how to win, wisdom is knowing what game to play.
I don't often post, but most of the comments here are completely wrong. I'm a bioengineer and have been following this project since its inception. Some points:
- This technology is NOT any more effective or dangerous than "traditional" genetic engineering. You will not be able to make a unicorn, dragon, or some unholy dog/cat combination.
- Building an Über Death Virus from this takes just as much skill, equipment, and knowledge as it would using standard tools. First, the BioBricks are made for use inside of a living bacterial organism. They will not work without a cell to operate in. A virus, by contrast, is just a specialized collection of proteins that is not in any way alive - something very very different from BioBricks.
"But what about a killer bacteria?" I hear you ask. Well, while technically possible, it's not easy to make something that can live comfortably in our bodies. To a foreign bacteria, our bodies are a fortress crawling with guards and death traps. It has taken nature millions of years to develop microbes capable of harming us (as our immune systems have also grown to combat each new threat.) The key point here is that, to create a NEW bacterial threat, one would have to be very well versed in biology and genetic engineering. What's more, for someone of this skill level, it would be much easier to create such a bacteria using standard biological techniques, not BioBricks.
These BioBricks are incredibly cool and powerful, within their problem domain. Making bacteria do things is very different from giving them the ability to successfully harm our bodies and spread to other hosts.
Well, I would just like to say that I for one welcome our new biological overlords, and the people who created them from easy to use kits to wipe out our human species.
-- Tigger warning: This post may contain tiggers! --
But what if we use our Bio Block Building Set to create a paper-eating organism?
Than it would be based on a rapidly consumed mythical piece of paper and your currency would truly devalue in a very organic kind of way.
Have to engineer something so it can handle those little metallic strips, tho.
-- Tigger warning: This post may contain tiggers! --
It's "lego" not "legos" you stupid colonials.
i understand the answer already
the truth is, your mind is brittle and inflexible
the average person on the street can decipher text messages, slang, etc., without any trouble or mental fuzziness
however, there exists a certain inflexible segment of small-mined, petty, and mediocre people who believe it is somehow more important to focus on the color of the wrapping paper rather than gift
that's a metaphor for valuing cosmetics over content. it means i think your mind is shallow. can you comprehend a metaphor dear autistic turd? or not until i rigidly adhere to strunk & white's elements of style will your dim mind whir and click the meaning into place?
in which case, it is with PLEASURE that my poor formatting trips up such brittle minds. consider it a useful filter on my part: when i confront grammar nazis, i am ENCOURAGED to format poorly based on your brittle reactions. i would choose not to continue communicating with minds that work like yours. and my poor formatting achieves that. magical, huh?
your feeble mind's inability to get over that which normal folk have no trouble digesting mentally is a loud and clear signal for me to ignore you, continue on my way, and be happy brittle feeble minds like yours are tripped up and sent packing from the conversation
you'll notice that was a run on sentence. you'll notice i don't fucking care, and am happy not to care, considering the type of person who does care. i feel liberated from mediocrity by ignoring your concerns
capisce, you useless feeble dim bulb? oh, and by the way, if you're still reading at this point: IF YOU GOT THROUGH THAT MUCH NEGATIVE BULLSHIT, AS BADLY FORMATTED AS IT WAS, AND YOU'RE STILL READING, WHY. THE. FUCK. DO. YOU. FUCKING. CARE. SO. MUCH. ABOUT. GRAMMAR. YOU. FUCKING. BRITTLE. MINDED. TURD?
xoxoxoxoxoxox
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
Sick, sick, sick...
;)
the Number of the Yeast...
OK, that was st00p3d.
Going anonymous with this one.
someone should make sure you stay away from lab equipment
(if you don't laugh at that comment, which was the intention, then perhaps it's a serious comment after all)
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
Hey, i guess we all gotta go sometime. Might as well make it child's play to wipeout 1/2 the planet from one 'oops' .
---- Booth was a patriot ----
Wait.. back up. "Synthetic biologists"? Who cares about some kit, they're already making synthetic biologists? I assume these biologists can then make more of themselves, so...
I, for one, welcome our new self-replicating biologist overlords.
So how do cells know where they're at and what
direction to go?
I want to understand how shapes can be programmed.
They clearly are, we are fromed a single cell and
look at the uniformity of our shapes.
Because I want to build an organic ship that
would be put through a process to make it as
hard as diamond. then add engine and go.
Or a dragon.
I would start with a root kit?
the first teenage biohack will be vat-grown chicken mcnuggets to replace the real mcnuggets in their school cafeteria. this after 13 year old suzy mcqueasy visits a farm and it dawns on her for the first time where her hamburgers come from
that's the kind of "less genocide" teenagers are concerned with
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
rude unwelcome truth over placid pointless white lies
that's my motto
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
(a parody of his famous 197x letter to people copying MS Basic)...
Hey you people!
Stop ripping off my cells! It's our intellectual property, copyright law applies, and we will sue the hell out of you!
This is my sig.
Shortly after landing on this planet, our early ancestors declared leaves legal tender, proving once and for all that money really does grow on trees. This lead to an inflation problem. However, last I checked they were embarking on a deforestation program to limit the money supply.
Knowledge is how to play a game, intelligence is how to win, wisdom is knowing what game to play.
I was a participant in the iGEM competition this year (Davidson/Missouri Western, check out our wiki). Some people are talking about the potential dangers these BioBricks have if they are publically available and easy to use. First, it might be important to clarify what they are. Four restriction enzyme sites on plasmids allow the stitching together of DNA sequences into any desired configuration. The registry contains hundreds (soon to be thousands) of parts that can be put together and dropped into cells. Most of these parts, though, already existed in nature. People have just thought of new ways of using them together.
There are no easy answers to the questions about the dangers of engineering life, but we have to think of the benefits of making science accessible and affordable. If you look at the projects these predominantly undergraduate teams have done, they all have so much creativity and show the great potential for engineering life. Teams have worked on developing cures for diseases (HIV, look at Slovenia's project), and this is only within the first couple years of the competition. Imagine what ten years will bring!
Furthermore, the rapid adoption and development of computers was a huge worry to the United States government. The USSR could develop nuclear weapons much more effectively and quickly with computers (think 8086's) than with pen and paper, and we were trying our hardest to prevent them from getting the technology. And yet we see that the benefits of open science in an open society are tremendous, as the internet has permanently shaped how we live in a positive way. There are risks out there, but science marches on, and we have to instead focus on what we can do to accept change and how to use it to our advantage.
You can lead a horse to water, but you can't make it dissolve.
Will our sewers become giant bioproduct generators..? the weirdest fumes come up from my sewer, different every day, like someone is doing experiments with a free flushable fuel source
I'm confused - why are we trying to design biological systems? Can't we just apply the well known laws of evolution to direct existing life forms to do what we want?
Will it be possible to distinguish designed life forms from those that arose via abiogenesis and naturalistic evolutionary processes?
Call me a corporate drone full of lobby money if you wish but... Isn't making a easy to use open source devkit for biology akin to giving away a SDK to make computer virus in a world where all users are locked with an unpatched Windows ME on an unfiltered internet connection ?
The Wise adapts himself to the world. The Fool adapts the world to himself. Therefore, all progress depends on the Fool.
Deleted
Very little of the US currency is paper and coin. The vast majority (something like 95%) of it is debt.
Deleted
You want to kill tens of millions of people? Pick up a bunch of poisonous crap from random home depots around the country, gather it all up in some vans, and dump it all in a bunch of $RANDOM_SMALL_CITY water supplies across the country at the same time, the small cities who don't have budget or infrastructure go guard those supplies. There you go - millions dead from common household materials, and all you have to know how to do is drive a truck and not be an idiot. You don't have to have genetically engineered bio-warfare materials to kill people.
If someone who is anywhere near intelligent wants to kill a bunch of people, like REALLY WANTS TO, they're going to do it. Nothing you or me or the government can do will stop them. All the government can do is stop the idiots and people who have other more specific aims than "kill a ton of random people".
Usually that aim is to strike mass panic in the populace. Alarmist people like you are the real problem. People like you have already let terrorists win. They don't even have to do any more damage, you are obviously already terrorized to the point where even the thought of something going wrong holds you back from truly progressive ideas, like this one.
and you wonder why it's annoying? a social deficit is a social deficit. this is not an observation that compels me to hold the autistic's/ asperger's hand and be understanding, this is an observation that compels the autistic/ aspergers to understand they are out of line and out of place. this is a comment board, not a speech pathology center
the brittle feeble emphasis on grammar interferes with proper social communication. an obsession with grammar belies a mind out of touch with what is important in a conversation. if you are trying to have a conversation with someone about biotech, and they constantly change the subject to your sentence structure, the only proper response is SHUT THE FUCK UP
am i supposed to be understanding? am i supposed to indulge the socially malformed and coddle them? "oh yes, my sentence structure, let me fix that." "oh yes, i misspelled that word, let me fix that."
that's giving the brittle mind the wrong idea: that their mediocrity is relevant. it feeds the wrong idea. it is far more useful for me to tell them what every socially well-formed individual is thinking: SHUT THE FUCK UP. NO ONE CARES ABOUT THAT
and i love the fact that you replied to me after absorbing my post above. it was rude, hostile, and poorly formatted. hey, twatstain: PROVE MY POOR FORMATTING IS AN IMPEDIMENT TO COMMUNICATION AND STOP FUCKING RESPONDING TO ME. OTHERWISE, YOU UNDERMINE YOUR ENTIRE ARGUMENT
now if you will excuse me, it's 10 minutes to wapner. definitely, definitely, 10 minutes to wapner
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
Bank notes are currency.
Shiny pieces of metal are coins.
Money includes these as well as IOUs and even entries in a ledger book.
If you deposing $100,000 in ACME bank, and ACME bank turns around and loans someone $200,000 so they can immediately deposit it into an account at ACME bank, we now have $300,000 floating around where there was only $100,000. Let's hope they don't all try to withdraw it all at once.
Knowledge is how to play a game, intelligence is how to win, wisdom is knowing what game to play.
i'm a big fat ugly rude obnoxious disgusting happy proud troll
so shut the fuck up and suck my dick, you fucking twat
xoxoxoxoxox
intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
Wasn't that the idea from the first batman movie??
Unfortunately, this is actually possible, as there are currently toothpastes on the market that contain KNO3(or potassium nitrate to all the non-chemies). Fortunately, they do not contain enough for it to be a problem.