Slashdot Mirror


Multicellular Life Evolves In Months, In a Lab

ananyo writes "The origin of multicellular life, one of the most important developments in Earth's history, could have occurred with surprising speed, U.S. researchers have shown. In the lab, a single-celled yeast (Saccharomyces cerevisiae) took less than 60 days to evolve into many-celled clusters that behaved as individuals. The clusters even developed a primitive division of labor, with some cells dying so that others could grow and reproduce. Multicellular life has evolved independently at least 25 times, but these transitions are so ancient that they have been hard to study. The researchers wanted to see if they could evolve multicellularity in a single-celled organism, using gravity as the selective pressure. In a tube of liquid, clusters of yeast cells settle at the bottom more quickly than single cells. By culturing only the cells that sank, they selected for those that stick together. After many rounds of selection over 60 days, the yeast had evolved into 'snowflakes' comprising dozens of cells."

285 comments

  1. Not so sure about this. by Anonymous Coward · · Score: 5, Informative

    This is likely just re-emergence of previously evolved and currently dormant behavior.

    1. Re:Not so sure about this. by syousef · · Score: 4, Funny

      This. I'd mod informative if I could.

      Slashdot moderation simply hasn't evolved to the point where you can.

      --
      These posts express my own personal views, not those of my employer
    2. Re:Not so sure about this. by Anonymous Coward · · Score: 5, Informative

      Also mentioned in tfa. The scientist says that he plans to do an experiment with organisms without multicellular ancestors.

    3. Re:Not so sure about this. by Anonymous Coward · · Score: 5, Informative

      This was on RichardDawkins.net back in June, and in the version of the article linked there, there were these telling paragraphs:

      Sceptics, however, point out that many yeast strains naturally form colonies, and that their ancestors were multicellular tens or hundreds of millions of years ago. As a result, they may have retained some evolved mechanisms for cell adhesion and programmed cell death, effectively stacking the deck in favour of Ratcliff's experiment.

      "I bet that yeast, having once been multicellular, never lost it completely," says Neil Blackstone, an evolutionary biologist at Northern Illinois University in DeKalb. "I don't think if you took something that had never been multicellular you would get it so quickly."

    4. Re:Not so sure about this. by moderatorrater · · Score: 3, Funny

      It's +5 informative now. Apparently our community acts as a group.

    5. Re:Not so sure about this. by cyachallenge · · Score: 3, Funny

      Apparently the group has become self aware!

    6. Re:Not so sure about this. by syousef · · Score: 4, Funny

      Apparently the group has become self aware!

      Nuke from orbit. It's the only way to be sure!

      --
      These posts express my own personal views, not those of my employer
    7. Re:Not so sure about this. by wvmarle · · Score: 1

      It will definitely take longer - how long is anyone's guess. Nevertheless it'd be an interesting experiment.

      Now a variation. Evolution involves random mutations: most don't do much if anything, others are lethal, and some will give a small advantage and giving those individuals an edge. These random mutations, mostly DNA copying errors, are thought to be caused by a.o. radiation. We are constantly bombarded by a low dose of cosmic radiation, and I would expect that is a major source of such errors. An impact by a cosmic ray at just the right moment and the wrong amino acid is built into the DNA.

      Would it be possible to speed up such an experiment by adding a small dose of radiation in the mix? Maybe something like 10 times background radiation or so, or whatever is considered safe for life - after all you don't want to kill off the experiment right away. Such radiation levels should increase the number of mutations, putting more randomness in the mix, and a higher chance to change the behaviour of the organism.

    8. Re:Not so sure about this. by Anonymous Coward · · Score: 1

      It has now become meta-self aware, or even meta-self meta-aware! Or is it meta-meta-aware?

      WE ARE SELF AWARE AND WE KNOW ABOUT IT!

    9. Re:Not so sure about this. by Barsteward · · Score: 3, Funny

      nah, god of the gaps did it

      --
      "The hands that help are better far than lips that pray." - Robert Ingersoll (1833-1899)
    10. Re:Not so sure about this. by Anonymous Coward · · Score: 0

      ^ This is the first thing I thought upon reading the brief above. It strikes me as somewhat extraordinary that the scientists in question hadn't thought of it. Well, I expect they had, it's just that the press release associated with all science these days seems to be embedded in buckets of unmitigated twaddle.

    11. Re:Not so sure about this. by harley78 · · Score: 1

      This is done with C. elegans daily. Ok, not exactly; but with chemicals such as EMS and gamma irradiation(and maybe other fun ways).

    12. Re:Not so sure about this. by wvmarle · · Score: 1

      Well cosmic radiation, at least the part that makes it through the atmosphere and which is powerful enough to do tamper with molecules, is gamma radiation.

    13. Re:Not so sure about this. by ByOhTek · · Score: 1

      Glad this got the mod up.

      It may not be re-emergence behavior, but even so, the other factor is - yeast are eukaryotic cells, which took a long time develop. If this example were done with prokaryotic cells, it might be more interesting from the perspective of an evolutionary biologist, given that is what life started with.

      --
      Self proclaimed typo king, and inventor of the bear destroying coffee table (patent not pending).
    14. Re:Not so sure about this. by Anonymous Coward · · Score: 0

      And by posting in this thread, you've made it impossible to moderate here even if you gain modpoints right now. Not only is your post off-topic, it is also counter-productive with respect to what you claim to be your goals.

    15. Re:Not so sure about this. by Tsingi · · Score: 1

      Apparently the group has become self aware!

      Nuke from orbit. It's the only way to be sure!

      Once again I feel I have to point out. THAT DIDN'T WORK! So it is not a way to be sure.

    16. Re:Not so sure about this. by Fieryphoenix · · Score: 1

      Thank you for posting that thought so that I didn't have to.

    17. Re:Not so sure about this. by Kozar_The_Malignant · · Score: 1

      Apparently the group has become self aware!

      Nuke from orbit. It's the only way to be sure!

      Once again I feel I have to point out. THAT DIDN'T WORK! So it is not a way to be sure.

      Clearly not enough nukes were used. You have to turn the target area into a sheet of radioactive glass.

      --
      Some mornings it's hardly worth chewing through the restraints to get out of bed.
    18. Re:Not so sure about this. by Dishevel · · Score: 1

      What happens if what you are trying to destroy IS a sheet of radioactive glass?

      --
      Why is it so hard to only have politicians for a few years, then have them go away?
    19. Re:Not so sure about this. by Tsingi · · Score: 1

      Apparently the group has become self aware!

      Nuke from orbit. It's the only way to be sure!

      Once again I feel I have to point out. THAT DIDN'T WORK! So it is not a way to be sure.

      Clearly not enough nukes were used. You have to turn the target area into a sheet of radioactive glass.

      Even better, make sure the target is still on the planet and not lurking in some mechanical space on your ship waiting to impregnate you with little aliens.

    20. Re:Not so sure about this. by _0xd0ad · · Score: 1

      You're done.

    21. Re:Not so sure about this. by Anonymous Coward · · Score: 0

      Apparently the group has become self aware!

      Nuke from orbit. It's the only way to be sure!

      Once again I feel I have to point out. THAT DIDN'T WORK! So it is not a way to be sure.

      Clearly not enough nukes were used. You have to turn the target planet into a sheet of radioactive glass.

      Fixed that for you.

    22. Re:Not so sure about this. by geoffrobinson · · Score: 1

      Yeast is in the fungi family, no?

      --
      Except for ending slavery, the Nazis, communism, & securing American independence, war has never solved anything.
    23. Re:Not so sure about this. by sammy+baby · · Score: 1

      What? Are you suggesting that Slashdot moderation was not intelligently designed?

    24. Re:Not so sure about this. by Teckla · · Score: 3, Interesting

      Slashdot moderation simply hasn't evolved to the point where you can.

      Good joke, but you've actually hit on a fundamental flaw with Slashdot's moderation system.

      Once in a while, I have mod points. I dig really deep, and look really hard, for those comments that are truly insightful and informative. But I get punished for trying to do a really good job: many of my mod points expire before I can use them.

      I've always wondered what the justification is for Slashdot mod points to have an arbitrary and artificial expiration date. Here's to hoping that, some day, the moderation system will evolve!

    25. Re:Not so sure about this. by PRMan · · Score: 2

      Definitely not. Have you seen the interface? No intelligence in sight.

      --
      Peter predicted that you would "deliberately forget" creation 2000 years ago...
    26. Re:Not so sure about this. by mydn · · Score: 1

      Yeah, that's old news. This type of evolution was demonstrated back in the 70s. A scientist named David Banner demonstrated advanced evolution using a bombardment of gamma radiation. I watched the whole thing on TV, it must be true.

      * Backpack over shoulder, walks off into the distance along a lonely stretch of road, melancholy music plays *

    27. Re:Not so sure about this. by Anonymous Coward · · Score: 0

      I assume the scientist did not read the following: http://www.orgone.org/articles/ax2001igna01a.htm
      Also, to add insult to injury: http://www.semp.us/publications/biot_reader.php?BiotID=455
      Debunk away!

    28. Re:Not so sure about this. by shiftless · · Score: 1

      It's all that "junk" DNA! We don't know what it does, so of course this means it has no function.

    29. Re:Not so sure about this. by Anonymous Coward · · Score: 0

      Probably so you can't register a hundred accounts and check them a year later for hundreds of mod points.

  2. Here's the actual article by damn_registrars · · Score: 4, Informative

    Experimental evolution of multicellularity

    And PNAS has it listed as open access, which means you should be able to download the full text regardless of your subscriber (or non-subscriber) status. Just click the Full Text link.

    --
    Damn_registrars has no butt-hole. Damn_registrars has no use for a butt-hole.
    1. Re:Here's the actual article by Anonymous Coward · · Score: 0

      And PNAS has it listed as open access, which means you should be able to download the full text regardless of your subscriber (or non-subscriber) status. Just click the Full Text link.

      This is so communist!!!!!! Outrageous!!!!!

  3. I've always wondered... by Beeftopia · · Score: 5, Insightful

    Do the mechanisms which originally created life still occur? Or is "The Genesis Event" so rare that it was a one-time occurrence billions of years ago?

    1. Re:I've always wondered... by Samantha+Wright · · Score: 5, Informative

      That's a big question! We currently believe that the circumstances that created life were pretty harsh in some respects and extremely mild in others. There are a number of different ideas floating around, including the proverbial primordial soup, clouds of space dust (panspermia), and a boiling puddle of fat. Most likely, the conditions that were on Earth billions of years ago (a hot boiling hell with a mostly hydrogen atmosphere, amongst other things) contributed substantially to the factors that led to life's rise.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    2. Re:I've always wondered... by tgd · · Score: 2

      Even if it was to happen, the world is a very different place now. A self-replicating bit of RNA or some other precursor is made of things that "real" life wants to eat. Not really any possibility you can evolve from a replicator to something capable of defending itself from advanced life fast enough to avoid the replicator being eaten.

      So, it could be happening all the time, but you're just not going to get a whole new form of life out of it, without some privacy and a chance to evolve.

    3. Re:I've always wondered... by tchuladdiass · · Score: 5, Interesting

      Now a related question -- is there any evidence (for or against) that life originated more than once on earth? Is the prevailing theory that a single reproducing organism came into being, from which all others were derived, or is it more likely that multiple instances of life happened over the course of time, and they all happen to take the same form? If this is the case, then it lends credence to life existing elsewhere in the universe, with much similarity to what we know. However, if it is unlikely for more than one independent instance of life to be similar, then we should be observing various non-related life types here on earth (i.e., some carbon based, some silicon based, etc).

    4. Re:I've always wondered... by Samantha+Wright · · Score: 5, Informative

      This has indeed been pondered! We're pretty sure that all life that presently exists all comes from one root, however. If there ever were alternative life-starting events, they didn't survive. The reason for this is that all extant organisms share a number of completely arbitrary decisions called chirality (if you know any physics, that's left-handed vs. right-handed molecular symmetry.) Chirality is completely random in the chemical reactions that produce amino acids and nucleotides, but absolutely fixed, in the same way, in every living organism we've studied. A number of environmental tests have been conducted specifically to look for organisms of contrary chirality, but we haven't found anything yet.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    5. Re:I've always wondered... by mrchaotica · · Score: 1

      My wild, completely uninformed guess is that life originated multiple times, and each subsequent new instance got immediately eaten by the (by then more evolved) first one.

      --

      "[Regarding the 'cloud,'] ownership was what made America different than Russia." -- Woz

    6. Re:I've always wondered... by Anonymous Coward · · Score: 0

      Hold on... in another three nano-centuries the lab will evolve their own yeast-based scientist / philosopher who will then declare carbon-based life forms as primitive. Oops...

    7. Re:I've always wondered... by Michael+Woodhams · · Score: 4, Interesting

      In all probability new life (unrelated to current life) cannot evolve on Earth because current life either prevents the required conditions (eating the food before it gets concentrated enough for extremely primitive life to make use of it) or out competing the new life as soon as it arises.

      If somehow the Earth were cleansed of all life but otherwise left unaffected, there is no great reason to believe it couldn't re-evolve life. However, as we don't understand the origin of life, there is a possibility that necessary conditions are no longer available - e.g. early life relies critically on the presence of a radioactive nucleotide with half-life of a few hundred million years, present in the early Earth but now decayed.

      We find evidence of life in pretty much the oldest rocks on Earth which could contain evidence of life. So in the only instance we can study, life arose about as soon as it possibly could have. This suggests (but does not prove) that given the right conditions, evolution of life is an easy step, rather than one which requires a once-in-a-trillion-years fluke occurance.

      However, unicellular life was around for some 2.5 to 3 billion years before multicellular life arose (or at least, multicellular life which left fossil evidence.) This suggests that the step from unicellular to multicellular is hard. Or so I've argued, until this result turned up...

      So, we have this result, and the fact that multicellularity has arisen multiple times, and although only in Eukaryotes, it has arisen in very distantly related Eukaryotes (plants vs the fungi/animal clade) suggesting that multicellularity is fairly easy to evolve. So why did it take so long? Perhaps it required a certain level of atmospheric oxygen before multicellular life was viable (plot.)

      (I have only tangential professional connection to these topics, so these are merely semi-educated ramblings.)

      --
      Quattuor res in hoc mundo sanctae sunt: libri, liberi, libertas et liberalitas.
    8. Re:I've always wondered... by DigiShaman · · Score: 1

      Wow! If that's the case, we may very well be all alone in the universe. A glitch of epic chance that should never have happened, but statistically would have sooner or later anyways. Earth just happened to be the place for this event to occur on.

      I really hope that's not the case. I sure would like to believe life is a common theme among planets with oceans of water.

      --
      Life is not for the lazy.
    9. Re:I've always wondered... by Beeftopia · · Score: 1

      My wild, completely uninformed guess is that life originated multiple times, and each subsequent new instance got immediately eaten by the (by then more evolved) first one.

      And perhaps with the universe occasionally hurling a massive rock at the earth, destroying much of the more evolved life on it in an epochal extinction event, allowing life to evolve in yet another direction. The impact point may have had some of the attributes of the ancient earth.

    10. Re:I've always wondered... by wvmarle · · Score: 1

      This has indeed been pondered! We're pretty sure that all life that presently exists all comes from one root, however.

      That doesn't surprise me in the least. There are so many similarities between various life forms it almost has to have a single root. With that I'm thinking of e.g. DNA: all life forms use the same four aminoacids and the same basic mechanisms for handling DNA, with minor variations like viruses that use RNA iirc. It's been a while since I had my biology lessons.

      Also the basic structure of cells is pretty much the same throughout all life forms. All cells have their mitochondria, their core, etc., often using the same proteins even. All those things already point to a single ancestor. Recently here on /. there were reports of extremophiles using arsenic in their DNA, that to me are still life forms very similar to the rest - still using DNA and proteins etc. They just adapted to live in a different environment, something that we call extreme, but what they would call home sweet home.

    11. Re:I've always wondered... by Samantha+Wright · · Score: 3, Interesting

      As would we all. Fortunately, the Fermi paradox ("why haven't we stumbled onto aliens yet if they're out there?"), one of the biggest puzzles in such questions, is easily answered with "because they're probably just getting started" due to the nature of star formation.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    12. Re:I've always wondered... by Richard.Tao · · Score: 2

      Huh. That got me thinking quite a bit! Wikipedia shows it's a questions that's been pondered since the father of gradual change himself, Darwin:
      He though that self replicating structures could happen, but that... "at the present day such matter would be instantly devoured or absorbed, which would not have been the case before living creatures were formed."
      And on that subject, "No new notable research or theory on the subject appeared until 1924, when Alexander Oparin reasoned that atmospheric oxygen prevents the synthesis of certain organic compounds that are necessary building blocks for the evolution of life."

      It seems like there were some specific circumstances to get life going down a certain path. But now with changed initial conditions and FIERCE competition for resources EVERYWHERE new self reproducing structures don't get too far.

    13. Re:I've always wondered... by Samantha+Wright · · Score: 4, Insightful

      A few clarifications, and things you might find neat:

      1. The nucleus and mitochondria only appear in more complex organisms (eukaryotes.) Simpler ones (prokaryotes: bacteria and archaeons) are just bags with DNA in them. Mitochondria and chloroplasts (and their less well-known cousins, chromoplasts and amyloplasts) actually started out as different kinds of bacteria and just got absorbed into a cell one day. They even have their own DNA, ribosomes, and reproductive cycle.
      2. No two species have exactly the same proteins, but their sequences are similar enough that we can infer homology (relatedness) over great distances; often billions of years of separation. That being said, there are some species so isolated and so remote (because all of their relatives have died off) that we have trouble proving homology for—but these species still do more or less the same functions with similarly-shaped proteins.
      3. The arsenic-using extremophile was more like arsenic-tolerant. Normally, organisms die when they take up arsenic because it replaces phosphorus with a heavier nucleus that has different binding affinities. However, the organism those researchers discovered was capable of replacing at least some of its phosphorus with arsenic without dying. But yeah, your point is correct! :)
      4. It's widely believed now (in an idea called the RNA World hypothesis) that DNA and proteins were invented later. The original "life" was probably a self-replicating RNA molecule. RNA can perform both catalytic functions (like proteins) and information storage functions (like DNA), it's just not as good at them. It still performs many of these functions in the modern cell as well—almost the entire ribosome (the protein making machine) is made out of RNA, and there's a large class of so-called "ribozymes" that can cut and modify other molecules.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    14. Re:I've always wondered... by arthurpaliden · · Score: 1

      If the laws of physics and chemistry have not changed over the last billion years or so then the process could very well still be happening.

    15. Re:I've always wondered... by Anonymous Coward · · Score: 0

      It's been proven many times that the 'genesis' happens in isolation without alternative chemical inputs.

      Science has proven that god could exist if he were a scientist.

    16. Re:I've always wondered... by wvmarle · · Score: 1

      The more you learn about it, the more complex life becomes!

      Mitochondria and chloroplasts (and their less well-known cousins, chromoplasts and amyloplasts) actually started out as different kinds of bacteria and just got absorbed into a cell one day. They even have their own DNA, ribosomes, and reproductive cycle.

      I am familiar with mitochondria having their own set of DNA, but that's pretty much how far my knowledge in the subject goes. And that this DNA is not shared through sexual reproduction: in case of human reproduction the mitochondrial DNA is exclusively the mother's, as sperm cells don't have any. But I've never heard about them having their own reproduction cycle etc - it seems like we could call mitochondria a separate life form, living in symbioses with us.

    17. Re:I've always wondered... by Samantha+Wright · · Score: 4, Informative

      Yep. It's called endosymbiotic theory. For a while it was just a crazy idea, but we're pretty sure we know exactly what kind of bacterium it came from (purple and green sulphur bacteria for mitochondria and chloroplasts, respectively.) Another name for it might be "yet another blatant dagger in the back of intelligent design," but genomics is a treasure trove of those on any day.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    18. Re:I've always wondered... by wvmarle · · Score: 1

      I'm sure those intelligent design people will use this to support their theory, it's surely easier than to explain fossils etc in a young-earth theory: how can such a complex design come into being without a highly intelligent designer creating it?

    19. Re:I've always wondered... by dwye · · Score: 3, Insightful

      More likely, it occurred once, and the first species ate the primordial soup until conditions (mainly nutrient density, I expect) dropped below the level that allowed abiogenesis to repeat. All that is required is that the expected time between abiogenesis events is longer than the time for first life to reproduce and spread throughout the world (or at least that part where the event could reoccur), and you have just one life event per planet (at least for most planets - statistically at least a few times the events must occur too frequently for only one type to dominate).

    20. Re:I've always wondered... by gmhowell · · Score: 1

      That's a big question! We currently believe that the circumstances that created life were pretty harsh in some respects and extremely mild in others.

      No, wrong! Everyone knows Gil Gerard went back in time and ejaculated into the primordial ooze. Why do people make things so complicated?

      --
      Jesus was all right but his disciples were thick and ordinary. -John Lennon
    21. Re:I've always wondered... by robotkid · · Score: 4, Interesting

      This has indeed been pondered! We're pretty sure that all life that presently exists all comes from one root, however. If there ever were alternative life-starting events, they didn't survive. The reason for this is that all extant organisms share a number of completely arbitrary decisions called chirality (if you know any physics, that's left-handed vs. right-handed molecular symmetry.) Chirality is completely random in the chemical reactions that produce amino acids and nucleotides, but absolutely fixed, in the same way, in every living organism we've studied. A number of environmental tests have been conducted specifically to look for organisms of contrary chirality, but we haven't found anything yet.

      There are two points here. As for the single root of life, I saw Carl Woese give a talk on this - see timely PNAS perspective here if you have institutional access: http://www.pnas.org/content/early/2012/01/13/1120749109.short?rss=1
        (he's a giant in evolutionary biology and the one who proved archaea were a separate lineage using ribosomal RNA sequences, thus redefining our understanding of microbiology, so I'm inclined to give large weight to his views)

      His view was that some events almost certainly happened to one unique organism, you can do the backwards projection on the endosymbiosis of mitochondria and a very distinct genetic profile emerges from multiple, independent lines of evidence. But when you try and project all the way back to the LUCA (last universal common ancestor of all three kingdoms) the uncertainty becomes so large and some of the contradictions so severe that it is in fact best explained by groups of highly similar (but not identical) universal ancestors over a window of time, not just literally one unique genome at a specific point in time. So he thinks that the "base" of the tree of life ends up being more like a collection of small shrubbery or bushes instead of a singular point of origin. Carrying that thought a bit further, if there were indeed multiple bushes of life at the start it seems probable there were also other bushes that completely vanished without a trace (no fossil record possible).

      As for the universal chirality, that speaks to the origin of self-replicating macromolecules that would have preceeded the last universal common ancestor by quite a spell, so we can only speculate what happened based on our knowledge of organic chemistry. NASA funds some rather creative chemists to think about this question to help define what life might be like elsewhere, and last time I saw one of them speak they seemed to be of the opinion that it was probably just a random chance that gave us one hand and not the other and that there were pools of similar chemical species being selectively concentrated by some sort of clay catalyst. But that means it could have occurred multiple times and only one pool resulted in a proto-cell, or multiple proto-cells arose and the rest died off, or maybe all steps really did only happen once, there's absolutely no projection or record to build upon except geological models of what the earth might have been like then.

    22. Re:I've always wondered... by rrohbeck · · Score: 2

      The question at that point becomes: What do you call life and where is the boundary between non-life or proto-life and "real" life?
      Just like you can never observe a speciation event because it is such a slow process and when you look very closely it becomes fuzzy and you have to ask what exactly is a species. Life is always a river and not a thread.

    23. Re:I've always wondered... by rrohbeck · · Score: 1

      Just the presence of oxygen will prevent whatever happened from occurring today. You can't have primeval soup on Earth today. However, I wonder if we shouldn't push the Urey experiment further. I always liked it and it was a big revelation when I read about it for the first time as a kid.

    24. Re:I've always wondered... by rts008 · · Score: 1

      Glad to welcome you to /., in case no one has before. I may be behind times. :-)
      I have been here a while, and just now noticed you.(knowledgeable and informative comments...I love it, I'm drawn in, I'm curious....)

      Not to mention the most generous offer:

      I am a biologist. Ask me questions in my journal. I'll give car/computer analogies if possible!

      Car/computer analogies?
      Natural hit here. Just remember Libraries of Congress conversions, and Hogsheads per hectacre metrics for the/us Luddites :-).
      Even with my minor degree in biochem, your comments are news to me....off to read up!

      This is what keeps me coming back to /..

      I have learned/got clues to learn more from /. via the diverse userbase and interests voiced here...
      Where do I start?....

      --
      Down With Slashdot BETA!!! I've been around the corner and seen the oliphant; you can only abuse me from your perspecti
    25. Re:I've always wondered... by harley78 · · Score: 1

      I tried to look it up on Wiki; but wiki dead.....SOPA/PIPA is bad, bring Wikipedia back?

    26. Re:I've always wondered... by Hognoxious · · Score: 1

      If no plants are photosynthesizing, will all the oxygen eventually go away? Is there enough reducing material sitting around to use it all up?

      --
      Confucius say, "Find worm in apple - bad. Find half a worm - worse."
    27. Re:I've always wondered... by Anonymous Coward · · Score: 0

      "...and a boiling puddle of fat."
       
      Just out of curiosity, I'm guessing you don't mean actual fat, which is made up of living cells. But for the life of me I can't figure out what you are referring to there.

    28. Re:I've always wondered... by GauteL · · Score: 1

      This has indeed been pondered! We're pretty sure that all life that presently exists all comes from one root, however. If there ever were alternative life-starting events, they didn't survive. The reason for this is that all extant organisms share a number of completely arbitrary decisions called chirality (if you know any physics, that's left-handed vs. right-handed molecular symmetry.) Chirality is completely random in the chemical reactions that produce amino acids and nucleotides, but absolutely fixed, in the same way, in every living organism we've studied. A number of environmental tests have been conducted specifically to look for organisms of contrary chirality, but we haven't found anything yet.

      Fascinating. However, is it possible that the alternative life didn't survive because they were different? I mean, if there was already a fairly large base of life out there that shared this chirality, couldn't it be an evolutionary advantage to be part of this? Would a different set of decisions make it difficult/impossible to join in with the chemical processes that supports the established type of life?

      You can probably tell I don't know that much about this!

    29. Re:I've always wondered... by necro81 · · Score: 1

      Do the mechanisms which originally created life still occur? Or is "The Genesis Event" so rare that it was a one-time occurrence billions of years ago

      The mechanisms and conditions still exist - to an extent. There are abundant chemical precursors around, energy from the sun or chemosynthesis. But there are a couple of important differences between now and when life first arose from the organic soup of aeons ago. The biggest difference I can think of: life already exists, which puts any new, nascent forms of life at a distinct disadvantage in terms of competing for resources and avoiding being eaten. When life first formed on Earth, they had the place to themselves, and so only had to worry about being obliterated by a lightning strike, volcano, meteor, or exposure to UV. They had time (a few billion years) to work things out. Today, it would be like a band of tribal people with spears competing against a modern mechanized army for the same scrap of land. We all know how well that worked for the upstarts (even if they won a battle or two, they usually lost the war, and badly). New life would need to find a niche where there would be less, or no, competition.

      This is not to say that it couldn't, or doesn't, still happen. I rather think that new viruses are forming all the time through the random clumping of various amino acids and RNA strands. Perhaps one in a quadrillion find a way to infect a host and perpetuate. But something totally new, created from pure organic chemistry, that didn't immediately get snuffed out or co-opted by present life: I think the chances are slim on this planet.

    30. Re:I've always wondered... by Tsingi · · Score: 1

      ... it becomes fuzzy and you have to ask what exactly is a species. Life is always a river and not a thread.

      A species is a living thing that creates more of itself. If it mates, any other being that can mate with it to produce the same offspring is the same species. When evolution drifts them apart far enough so they cannot do that, then a new species has formed.

    31. Re:I've always wondered... by BlueParrot · · Score: 1

      The dead plants and animals would start to rot, with bacteria consuming the oxygen.

    32. Re:I've always wondered... by Samantha+Wright · · Score: 2

      Lipids. Fat storage cells (adipose tissue) store lipids as a source of energy. Every cell is coated in a thin layer of lipids, most likely because bubbles of lipid bilayers can bleb off under the right coercion, much like cells dividing. It means less work for the cell when it actually needs to go and divide. (And yes, "bleb" is totally legitimate scientific terminology.)

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    33. Re:I've always wondered... by Samantha+Wright · · Score: 1

      Well, as robotkid pointed out, a lot of people believe that our chirality simply got lucky and had the upper hand, sort of like matter vs. antimatter in the big bang, except with evolution instead of something we don't understand (this is a bad analogy.) The environment these organisms would have been reproducing in was almost certainly achiral (not containing any molecules that benefited either orientation) or at least racemic (an equal mixture of both chiralities.) There's nothing about one chirality, other than the ability to utilize available chemicals based on their chiralities, that makes it better than the other.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    34. Re:I've always wondered... by DriedClexler · · Score: 1

      I recently read Dawkins's Greatest Show on Earth, and I have to nitpick even despite your superior expertise:

      Wouldn't it be more accurate on 4) to say that RNA performs catalytic functions like enzymes rather than like proteins? Since enzymes are the subset of proteins tthat catalyze reactions?

      --
      Information theory is life. The rest is just the KL divergence.
    35. Re:I've always wondered... by _0xd0ad · · Score: 1

      Have I ever told you that I probably disagree with you on some very fundamental issues, but I still find you very interesting and engaging? and that I hope you can say the same of me?

      Now I have. And you're female, which doesn't hurt. :)

    36. Re:I've always wondered... by thrich81 · · Score: 1

      I read a book about 15 years ago (I think called "Chemical Evolution") which stated that the chirality of living organisms was determined during the "replicating molecule" stage in life's origins because some important chiral molecules are very, very slightly more stable in one enantiomer due to the asymmetry of the nuclear weak force. The math seemed convincing at the time, but I never checked the other references. Sorry I can't give more detail. Is this something which was dismissed by the biology community a long time ago?

    37. Re:I've always wondered... by _0xd0ad · · Score: 1

      Let it load till you see the text, then Esc Esc Esc. The black won't appear.

      There's probably something you could adblock away, but for 24 hours it's not worth the effort.

    38. Re:I've always wondered... by Guppy · · Score: 1

      Do the mechanisms which originally created life still occur? Or is "The Genesis Event" so rare that it was a one-time occurrence billions of years ago?

      Any modern-day "genesis events" would face some serious barriers. One is the presence of oxygen in the great majority of environments on earth -- the primordial atmosphere was almost certainly reducing prior to the development of photosynthesis. Another is the presence of already-evolved life-forms, who would be glad to munch on any piles of organic molecules with pretensions of self-replication.

    39. Re:I've always wondered... by Samantha+Wright · · Score: 1

      Well, it's not really a highly complex design as much as it is very clear evidence of a two billion year old car crash. Sort of puts the damper on things.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    40. Re:I've always wondered... by Anonymous Coward · · Score: 0

      Sperm cells have mitochondria, however, when human sperm fuses with the egg the paternal mitochondria are "marked for deletion" and broken down quickly.

    41. Re:I've always wondered... by Samantha+Wright · · Score: 1

      Well, you're correct that the ability of ribonucleic acids to function as enzymes was the point I was making, but there's nothing stopping RNA from acting as other classes of proteins (which are pretty much just structural support and signalling molecules.) They're a little lousy at structural functions, but pretty good at message-passing. (Smalltalk is more relevant than most people realise.)

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    42. Re:I've always wondered... by Samantha+Wright · · Score: 1

      I have never heard of enantiomers having different stabilities. I don't think I have enough physical chemistry background to answer this, sorry! I'll see if I can find an answer, though.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    43. Re:I've always wondered... by Samantha+Wright · · Score: 1

      I have no idea. I'm afraid I don't recall talking to you much! But then again, I don't keep track of much here, since Slashdot is so weak as a social platform. But I'll keep an eye out. (And what, pray tell, do we disagree on?)

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    44. Re:I've always wondered... by Samantha+Wright · · Score: 1

      I've probably been posting for close to a year now, so I'm afraid you're a bit late! As for where to start: anywhere it's professional to.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    45. Re:I've always wondered... by _0xd0ad · · Score: 1

      I'm afraid I don't recall talking to you much!

      I haven't been entirely noticeable. In fact, I've been deliberately unnoticeable.

      It's a problem, and it's something I'm working on fixing.

      But yes, I have had a few not-unpleasant encounters with you. I might have replied to you anonymously once or twice. You strike me as a very pleasant person.

      And what, pray tell, do we disagree on?

      Well, to put it mildly, I'm a God-fearing Bible-thumping ID proponent. But other than just about everything, not a lot. And my Bible is made of words, not bricks, so I'll try to keep it in that sense and not the other.

    46. Re:I've always wondered... by Samantha+Wright · · Score: 1

      Hmm. Sounds dire. I was going to say something biting, but I'll refrain. See you around!

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    47. Re:I've always wondered... by _0xd0ad · · Score: 1

      Thanks. Feel free to check my stream of thoughts, occasionally. But don't stalk me or anything. That'd be creepy. ;)

    48. Re:I've always wondered... by rrohbeck · · Score: 1

      Yes. Weathering uses oxygen too so geological processes would suck it up long term.

    49. Re:I've always wondered... by rrohbeck · · Score: 1

      But if you look closely it's not as easy as that. Look up ring species for example. There are many cases where the answer to "can mate to produce [viable] offspring" is "in some cases."

    50. Re:I've always wondered... by Twanfox · · Score: 1

      Explain Mules then: http://www.lovelongears.com/about_mules.html

      Donkeys (Equus africanus asinus) and Horses (Equus ferus caballus) are generally able to crossbreed, but they cannot breed true. That is, if you mix an American Paint pony and a Donkey together, they can produce offspring. However, the offspring cannot reproduce. Now you used the term 'to produce the same offspring'. What is considered the same? Thoroughbred and American Paint? Palomino and Lipizzaner? Clydesdale and Spanish Mustang? Some are big and some are small, but all considered to be in the same species. Is their offspring the same as if you paired them differently?

      That's the kind of fuzziness I think the Parent is trying to get at. If you saw two purebred Clydesdale horses and they produced another Clydesdale, it would be obvious by your definition that they're the same species. If you paired different horse breeds, the offspring would not be 'the same' as it would contain characteristics of both parents, but not look exactly like either.

    51. Re:I've always wondered... by jbengt · · Score: 1

      Please read about ring species and other issues about speciation to see how the simple concept you posted does not remove the fuzziness that GP noted.

    52. Re:I've always wondered... by Tsingi · · Score: 1

      The definition I gave is the generic definition from "The Ancestors Tale" as best I remember it. Dawkins discusses many divergent mating behaviors and some odd species classifications in different "Tales" in the book.

      Wikipedia says something similar: A species is often defined as a group of organisms capable of interbreeding and producing fertile offspring. While in many cases, this definition is adequate, more precise or differing measures are often used, such as similarity of DNA, morphology or ecological niche.

    53. Re:I've always wondered... by skydyr · · Score: 1

      So what happens when you have an island chain, and the fly-eating birds or whatever on island A can mate with those on B successfully, and those on island C can also mate with those on island B successfully, but those on island A can't successfully mate with those on island C?

    54. Re:I've always wondered... by _0xd0ad · · Score: 1

      A rare instance that doesn't fit into your box doesn't always mean you should burn the box.

    55. Re:I've always wondered... by Tsingi · · Score: 1

      So what happens when you have an island chain, and the fly-eating birds or whatever on island A can mate with those on B successfully, and those on island C can also mate with those on island B successfully, but those on island A can't successfully mate with those on island C?

      Anarchy

    56. Re:I've always wondered... by Hognoxious · · Score: 1

      I don't know why you thought nobody knew that, or why you think it answers the actual question that was asked.

      --
      Confucius say, "Find worm in apple - bad. Find half a worm - worse."
    57. Re:I've always wondered... by powerlinekid · · Score: 1

      No to mention that the first life had an advantage in there currently being no existing life to compete with. Any new life would immediately have to compete with heavily evolved organisms that do not see the new life as special... just as a new snack.

      --

      can't sleep slashdot will eat me
    58. Re:I've always wondered... by infinitelink · · Score: 1

      No to mention that the first life had an advantage in there currently being no existing life to compete with. Any new life would immediately have to compete with heavily evolved organisms that do not see the new life as special... just as a new snack.

      You're talking about phagocytosis. If we working from the assumption that early life should be simpler, you have to talk about it deriving energy from simpler chemicals in the environment: one organism eating another is (dare I say it) far more complex than the (also complex) task of ingesting rawer materials less organized than in, say, a cellular compact: not the sort of thing Occam's (mentioned and fought over above) prefers in early stages of development. More likely would be the earlier appeared organism would out-compete the newbie for the same raw materials, that is, if the newbie required any of the same stuff for viability.

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    59. Re:I've always wondered... by infinitelink · · Score: 1

      As a bioguy, you are oversimplifying a lot here: and reducing the doubt regarding these things from view. For points 1-4. For the computer nerds sure, but still... : )

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    60. Re:I've always wondered... by grep_rocks · · Score: 1

      You can also think of the Fermi paradox as setting a limit on how far away the nearest spacefaring civilization is, since they have not got here yet and they expand at say 10% the speed (pick a fraction) of light they have to be at least 400M light-years away, given a 4 billion year old age of the earth - might be less if we don't think there were enough heavy elements produced until more recently - say 100M light years, which puts them outside of our local supercluster.

    61. Re:I've always wondered... by _0xd0ad · · Score: 1

      P.S. Yes, very dire. I plan on getting around to dying of it someday, if nothing else kills me first.

    62. Re:I've always wondered... by Samantha+Wright · · Score: 1

      I meant the thumping, not the lurking. I suppose you might have meant that too, but it would make the original statement rather hard to swallow.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    63. Re:I've always wondered... by Samantha+Wright · · Score: 1

      Yes, and I could go on forever about how these things are uncertain. I'd like to think that as long as I'm not committing the travesties of popular science journalism I'm at least not doing anyone a disservice. Feel free to point out any particular objections that you think stray too far toward insisting one particular theory is consensus.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    64. Re:I've always wondered... by _0xd0ad · · Score: 1

      I meant the thumping, not the lurking. I suppose you might have meant that too

      I did in fact mean that.

      it would make the original statement rather hard to swallow

      It was a half-joking way of answering your question both by defining my positions and also assuring you that you probably won't change my mind, although I'll be happy to discuss differences civilly. And, per my original comment, you seem like the sort of person who's able do that too. Does that make it any easier to swallow?

    65. Re:I've always wondered... by infinitelink · · Score: 1

      Actually there is plenty of travesty in your writing on the level of popular science journalism with which I could take issue, but I did not and will not for the medium of communication and the fact that it is impertinent to the audience here which is unlikely to have many with the background to understand or benefit from it much, and frankly much of what happens in popular science journalism does because to write in anything less than a large tome will by consequence of the nature of the topics elucidated make for nothing more than inaccurate communication to those without the background. Further I avoid doing so for the esoteric realms to be broached in critique of science and modes of explanation for phenomena in order to answer the statements you made, which even most highly trained scientists, who at heart are experimentalists and not philosophers able to critique logic and narrative for consistency and rationality in accord with nature or observations they have made and fitted with certain explanations, or metaphysical professors able to discern where a statement concerns existential ramifications as opposed to ontologies, struggle to appreciate.

      Now I didn't mention any of that in the first reply and I even put a smiley at the end like this, : ) in a sort of expression of solidarity towards someone who, trying to explain complicated things to a bunch of people who might not have ever had the privilege or time to get the background necessary to understand them, is ensconced with difficulties that seem impossible to surmount, especially when trying to talk to a large denominator given no hint as to what exactly that group actually knows prior, but you didn't catch that. I know in the heated political and ideological battleground that are the modern natural sciences, especially biology with the positivists screaming "God is dead" (and apparently not understanding what Nietzsche meant) and the theists screaming "nuh uh", the egomaniacs competing for grants and shouting "no your stupider" at each other (I was "privileged" with getting to see some REALLY big science egos personally; a professor in my family who has been known to get to host the likes of the late Stephen J. Gould also gives me some juicy details on this sort of a thing), and other battles, and that is the community called "Slashdot", we tend to get adversarial, but perhaps you ought take a moment to figure if someone giving you a playful jab is really an adversary or just being friendly. You know,
      : )

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    66. Re:I've always wondered... by Anonymous Coward · · Score: 0

      Actually there is plenty of travesty in your writing on the level of popular science journalism with which I could take issue, but I did not and will not for the medium of communication and the fact that it is impertinent to the audience here which is unlikely to have many with the background to understand or benefit from it much, and frankly much of what happens in popular science journalism does because to write in anything less than a large tome will by consequence of the nature of the topics elucidated make for nothing more than inaccurate communication to those without the background.

      Wowwwwww. I think that full stop really means "pause for air".

    67. Re:I've always wondered... by Anonymous Coward · · Score: 0

      I know in the heated political and ideological battleground that are the modern natural sciences,

      especially biology with the

      positivists screaming "God is dead"

      (and apparently not understanding what Nietzsche meant)

      and the theists screaming "nuh uh",

      the egomaniacs competing for grants and shouting "no your stupider" at each other

      (I was "privileged" with getting to see some REALLY big science egos personally;

      a professor in my family who has been known to get to host the likes of the late Stephen J. Gould also gives me some juicy details on this sort of a thing)

      and other battles,

      and that is the community called "Slashdot",

      we tend to get adversarial, but

      perhaps you ought take a moment to figure if someone giving you a playful jab is really an adversary or just being friendly.

      There, that's much better. And now that I understand it, I think I even agree with it. Except for that comment about this being Slashdot, which you rammed into a hole where it really doesn't seem to fit.

      I think if you tried to diagram that sentence you'd end up with more of a highway atlas than a diagram.

    68. Re:I've always wondered... by the+biologist · · Score: 1

      You don't need phagocytosis to feed on other new-biogenesised organisms. All you need is to spit something at them which adds some disorder or breaks down some component. As these new organisms would be barely distinguishable from the food for the first organism...

      Yes, I actually am a biologist, a year away from completing my PhD on the subject.

    69. Re:I've always wondered... by Samantha+Wright · · Score: 1

      It does, although it still leaves many mysteries.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    70. Re:I've always wondered... by infinitelink · · Score: 1

      Diagramming can be fun, but doesn't always work when confronted with the likes of semantic inheritance or signposts. The comment on /. is an echo of "that are" but for the singular, and I meant only that /. can be quite the adversarial community of people shouting at each other. It can also be one full of pomposity or long windedness, and people showing off, and for the fun of it I tried to catch all that in the style of my last reply.

      ; )

      I feel the pain though, as my brain got into nesting things neatly the first semester of Java pouring over pages and pages of printouts years ago trying to find the one darn little bracket that had to be missing. That and playing around with HTML. Subsequent cancer treatments later fried the fruits of those labors out of my mind, but got what was left interested in biology and the sciences; also leftover was trying to look at grammar and language like a bunch of neat nests (and it has taken years to undo this since semantic signposts and other signals are also important--especially to those interested in reading very old literatures). If you agree with some of the philosophical stuff also, by the way, and would like further reading, I have read a bit by Stephen Hawking about why he chose physics over biology and it parallels my observations (in meaning, if any gets angry over ordis, his words definitely take priority on such things): complained that biologists just did not define or explain things well. That they lacked precision. There are some old works on epistemology relevant to such things as well: "The Order and Integration of Knowledge" by Martin is such a work, cheap if you can find it.

      Too bad that more minds that demand that sort of rigor don't jump into biology with greater frequency, since often they do great things when they come to the dark side even if, as Crick put it, it's like starting fresh since so much more experimental corroboration is necessary, yet look at what happened when Francis Crick did! I remember a few years back when another physicist started dabbling he found an equation describing the structure and distribution of vascular networks for perhaps every known example of life that has any, but can't recall his name at the moment (sorry). Darn I should, as it was big news among the bionerds at the time.

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    71. Re:I've always wondered... by infinitelink · · Score: 1

      So we go from internal to external digestion with just a little hint of biological warfare? The actual fact that the other organism is a highly organized set of chemicals to qualify as life in the first place perhaps might defy simply generalizing that one need only spit something at them which causes disorder and the other is barely distinguishable from food to the more evolved organism, given that the latter itself would have to be able to survive other harsh conditions that should cause disorder or breakdown without such countermeasures. Fun to talk though, keep it coming. I am interested in anything you have to show me I am wrong, and eager to learn. I was a biology student until getting rather sick, and would be going back perhaps soon if it weren't for a family member needing oversight and care, so my exposure to the discipline for the good part of several years has been limited to neurobiology and to some advanced research on the role of a certain protein (I can't actually talk about in specifics) in effects upon mental development and capability for a friend getting a PhD in that arena, (checking for problems in her theories, papers, etc.), and helping sort through students' papers for problems in their grading (though of course ensuring all decisions made final are by her review since she was in charge of those classes; also to help check to see her standards were applied consistently from beginning to end of grading to make sure students are treated fairly rather than varying due to being near the top of the stack where a grader is sure to be less tired and frustrated, or near the end). From that perspective, so sorry for your graduate status: it is often comparable to slavery these days, and no real protections or safeguards from the institution which can spit someone out at any time or heap enough atop someone to just crush them. Congrats on being in your final year: the proverbial light at the tunnel's end is good to see in any endeavor suffered long.

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    72. Re:I've always wondered... by the+biologist · · Score: 1

      So we go from internal to external digestion with just a little hint of biological warfare?

      External digestion is the simpler state, and there is nothing in biology that isn't biological warfare.

      The actual fact that the other organism is a highly organized set of chemicals to qualify as life in the first place perhaps might defy simply generalizing that one need only spit something at them which causes disorder and the other is barely distinguishable from food to the more evolved organism, given that the latter itself would have to be able to survive other harsh conditions that should cause disorder or breakdown without such countermeasures.

      The other organism would not have to be a 'highly organized set of chemicals' to qualify as life in the first place. You and I are barely distinguishable from food for bacteria, but we've evolved to deal with them specifically. Why would there be other harsh conditions?

      Fun to talk though, keep it coming. I am interested in anything you have to show me I am wrong, and eager to learn.

      Abiogenesis is an area of spent a lot of time thinking about, but it is really hard to do real science in because... well, we have no idea how it really happened in our specific case.

      I was a biology student until getting rather sick, and would be going back perhaps soon if it weren't for a family member needing oversight and care, so my exposure to the discipline for the good part of several years has been limited to neurobiology and to some advanced research on the role of a certain protein (I can't actually talk about in specifics) in effects upon mental development and capability for a friend getting a PhD in that arena, (checking for problems in her theories, papers, etc.), and helping sort through students' papers for problems in their grading (though of course ensuring all decisions made final are by her review since she was in charge of those classes; also to help check to see her standards were applied consistently from beginning to end of grading to make sure students are treated fairly rather than varying due to being near the top of the stack where a grader is sure to be less tired and frustrated, or near the end).

      Fortunately, just taking a break from school doesn't impair your ability to get back into it in the future if you're interested in doing so. I was between school and school for six years. If the reason for the break was failing out of school... it will just take a bit more motivation. ;-)

      From that perspective, so sorry for your graduate status: it is often comparable to slavery these days, and no real protections or safeguards from the institution which can spit someone out at any time or heap enough atop someone to just crush them. Congrats on being in your final year: the proverbial light at the tunnel's end is good to see in any endeavor suffered long.

      It's really not that bad, so long as you're interested in the subject within which you're working. It also helps if you're working in a modern science, as there will be plenty of money around. If you're in grad school for english rhetoric... maybe not.

    73. Re:I've always wondered... by infinitelink · · Score: 1

      The other organism would not have to be a 'highly organized set of chemicals' to qualify as life in the first place.

      I mean compared to the environment around them.

      You and I are barely distinguishable from food for bacteria, but we've evolved to deal with them specifically

      As organisms are organized chemicals and structures to deal with the environment, hence to

      Why would there be other harsh conditions?

      what I meant. Especially the conditions we currently conceive of as probably on early Earth. But to put it generally, all non-life conditions are essentially hostile to lifeforms.

      If the reason for the break was failing out of school... it will just take a bit more motivation. ;-)

      Just kept getting sick. Had to leave so my GPA wouldn't get totally destroyed: you can't study when you're anesthetized on an ever-increasing dose of antihistamines for various cell receptors to keep your immune system from eating you. (Darn that sucked.)

      It [...] helps if you're working in a modern science [...] there will be plenty of money around. If you're in grad school for english rhetoric... maybe not.

      Don't know that I have ever actually used this myself, but I actually LOLed.

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    74. Re:I've always wondered... by Samantha+Wright · · Score: 1

      Then let's have it out—I might learn something I didn't know. I should confess at this point that I am a lowly senior-year undergraduate and no doubt blindly believe a number of theories to be indubitably true. (And as such, I am particularly taken aback by your inclusion of my description of endosymbiosis as questionable.) If your schedule can accommodate it, I am your willing student.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    75. Re:I've always wondered... by Samantha+Wright · · Score: 1

      (Ordis?)

      Fear not—I have had my phases of Victorian literary affect as well, and even if no other Slashdot user can make sense of your intricate chronicling of thought, I'll gladly jump in. (Although the sentence ending in "struggle to appreciate" was indefensibly bad planning.)

      What I've found amongst bioinformaticians is that they generally have the clarity of thought and epistemology that is gifted to natural programmers, but we simply don't generally utilize it. What I've read of (professional) epistemology has always been strikingly compatible with what I already intuitively know—although my father having a philosophy education might have influenced that somewhat.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    76. Re:I've always wondered... by Anonymous Coward · · Score: 0

      I feel the pain though, as my brain got into nesting things neatly the first semester of Java

      Indeed. No offense intended, but perhaps the reason you find yourself being misunderstood is not others failing to "take a moment to figure" your comment out, but rather "a moment" being fairly inadequate for that task?

      While it's obvious that they're the product of a brilliant mind, they read like a direct neural line from that mind on caffeine.

    77. Re:I've always wondered... by infinitelink · · Score: 1

      Forgive--I was not attempting to be florid, nor employing literary affect; it--ordis--is a Late Latin term used for logic order of things, without necessarily having any reference to time; I have seen it used rarely but it is remarkably useful, and I don't really think too hard about employing it. Similarly, I did not plan out that sentence, I just wrote it. I think a little differently, having studied languages where other signposts exist to help someone orient themselves around some communication. Spanish has sex, Latin, Greek, and other case based languages have their morphological termini as well.

      Written English has something between that nesting and the remaining sense of pause imbued in punctuation for knowing how things fit: it's a bit of a mess; has some semantic inheritances and correlators, and here and there associated items, but still messy. As for clarity, an example I think upon is the likes of Organic Chemistry courses where professors explain to new students that the terms they will be employing are essentially the same that inorganic chemists employ, but just useful for the different contexts, when in reality they are actually speaking not of the same thing, as I have seen teachers assert, but of different aspects of the same thing. Indeed that should be intuitive, and to some it is, with others not so much. Programmers get into that realm frequently, like we see around here with debate over whether pointers and objects indicated are the same or really different. The answer is neither yes nor no. One is object, other is not; one inherits something of its nature from the other, the other a thing in itself (excepting that we start considering nothing is a thing in itself, but just for thought purposes).

      What I've read of (professional) epistemology has always been strikingly compatible with what I already intuitively know—although my father having a philosophy education might have influenced that somewhat.

      Yes perhaps. I could say something similar: having an English professor in the family who reads various languages and sends me mountains of books may have something to do with the oddities like using "ordis".

      : )

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    78. Re:I've always wondered... by infinitelink · · Score: 1

      I am particularly taken aback by your inclusion of my description of endosymbiosis as questionable.

      It's the certainty about it:

      Mitochondria and chloroplasts (and their less well-known cousins, chromoplasts and amyloplasts) actually started out as different kinds of bacteria and just got absorbed into a cell one day.

      or maybe it is the nonchalance of presentation. "just go absorbed into a cell one day". It's quite the think to talk about two very different organisms of any kinds becoming one: endosymbiosis is one thing, but what we have at hand are truly integrated systems that behave as one and can only be separated in rare instances (yeast have been found to survive without them on some substrates). There is that sense of "well it had to have happened somewhere along these lines", but at least professors I had were somewhat reticent about insisting upon that; reasons for it include analogues between the organelles and other independent critters; difficulties include the elegant coordination between genetic regulation in the nucleus and that in mitochondria in the cell. Sure they are just difficulties, but the sort of thing at which some great minds do take pause...so again, perhaps any "problem" I have is more to the nonchalance of presentation. Maybe I just take after the example of those I studied under.

      If your schedule can accommodate it, I am your willing student.

      I wish. If it did I might ask also to be yours. As it is, I have been taking far too much time as it is interacting on these forums today (alerts via a mobile device), probably for escape: too much to do and much of it drudgery. But not getting it all done affects others dependent on me, so I intend this to be my final message of the day.

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    79. Re:I've always wondered... by Anonymous Coward · · Score: 0

      It can also be one full of pomposity or long windedness, and people showing off, and for the fun of it I tried to catch all that in the style of my last reply.

      Ah, missed that when I first read your reply. Yes, it was quite noticeable, but I didn't realize it was deliberate.

      I actually pasted that first sentence into a language analyzer and one of the ratings it gave for that sentence was something like 60+ years of education for the average person to be skilled in language so as to comprehend its meaning after reading it only once. Which, I might add, is another reason it's good to re-read sometimes.

    80. Re:I've always wondered... by Anonymous Coward · · Score: 0

      Another name for it might be "yet another blatant dagger in the back of intelligent design,"

      Wow, that post went from "Informative" to "Petty" in a few words -- like a pizza boy trying to get a bigger tip by telling me a racist joke.

    81. Re:I've always wondered... by Samantha+Wright · · Score: 1

      Tsk, tsk: Spanish doesn't have sex, it has gender, which is descended from the Latin cases with some Gallic corruption. I think you'll find that languages with grammatical gender facilities reserved exclusively for sex are more common in the Germanic family, and not generally part of the Romance tree.

      But at least now I know what you're talking about. :)

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    82. Re:I've always wondered... by infinitelink · · Score: 1

      Tsk, tsk: Spanish doesn't have sex, it has gender, which is descended from the Latin cases with some Gallic corruption.

      Mea culpa. I should know better. La corbata certainly isn't sexually or naturally female, and vestido certainly is not male.
      : )
      Now as for really not replying anymore to finish what needs to be done...

      --
      Intelligent idiots are we. | Evil men do not understand justice.
    83. Re:I've always wondered... by Samantha+Wright · · Score: 1

      I see. Presenting these sorts of things in a nonchalant manner is not something to be feared—what it lacks in precision (endosymbiosis most likely took many years to become as interdependent as it is, although obligate symbionts lose genes with exceptional expedience when said genes are redundant) it makes up for in succinctness and compactness of thought. When something is certain, or nearly so, forcing oneself to emphasize the details at every opportunity amounts to nothing short of impediment; what is essential to the idea is not that endosymbiosis gradually occurred, but simply that it did. Complicating communication, by expatiating on the point in full detail and not stating the core idea first, is a disservice that, at least these days, is hinted at to students in ninth grade English class when they're first told how to write newspaper articles. An effective student, then, is one who can then trawl through a complicated presentation and render it in simple, useful terms, structured in memory so that the details are ancillary to the heart of the matter.

      In all honesty, my experience with biologists is that a culture of commiseration is at the heart of preserving the insistence of rigorous formalism in the language used in papers, but fortunately this does not impede the stated goals of such—ensuring continued clarity of thought and accountability without conceptually redundant elaboration. That doesn't mean that blunt legibility need be an enemy, however. It can guarantee understanding.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    84. Re:I've always wondered... by Samantha+Wright · · Score: 1

      I normally wouldn't stoop to such things, but this comment preceded our little chat, _0xd0ad. I do, however, feel rather strongly that it is particularly damning to your worldview. (Even moreso than the rather torrid history of the Bible's editorial staff, or other, more predictable barbs.)

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    85. Re:I've always wondered... by _0xd0ad · · Score: 1

      That AC wasn't me. I've been posting anon, but that wasn't one of them.

    86. Re:I've always wondered... by _0xd0ad · · Score: 1

      As a matter of fact, I didn't even notice that you'd mentioned ID when I posted.

      As I said, I already knew your position on that and so I probably compressed it out of your comment when I read it.

    87. Re:I've always wondered... by _0xd0ad · · Score: 1

      As a matter of fact, I didn't even notice that you'd mentioned ID when I posted.

      As I said, I already knew your position on that and so I probably compressed it out of your comment when I read it.

      (repost because I accidentally replied to the AC due to Slashdot's poor parenting skills.)

    88. Re:I've always wondered... by Samantha+Wright · · Score: 1

      Dang! Sorry for the accusation, then. Carry on.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    89. Re:I've always wondered... by Anonymous Coward · · Score: 0

      Do you really need to insert your 2 cents?
      Do you think a bacteria mates another one to produce offspring, or grass does that? Maybe working bee/ant can mate and produce offspring of same species? Need more examples?

    90. Re:I've always wondered... by the+biologist · · Score: 1

      I mean compared to the environment around them.

      Even then, there is no really good reason to think the very first life forms were all that different from the chemistry that was going on around them.

      As organisms are organized chemicals and structures to deal with the environment, hence to

      The vary earliest of life forms wouldn't have necessarily have had to deal with much of anything aside from absorbing the readily available food. The first predation probably occurred when some component of the slurry ran out and something figured out how to get that component from someone else (who was still figuring out how to use it).

      what I meant. Especially the conditions we currently conceive of as probably on early Earth. But to put it generally, all non-life conditions are essentially hostile to lifeforms.

      Now, generally, yes. At the very start, with useful molecules all over the place with nothing to eat them... it is not so certain. This is the sort of thing that makes this topic interesting.

      Don't know that I have ever actually used this myself, but I actually LOLed.

      ;-)

    91. Re:I've always wondered... by Twanfox · · Score: 1

      And I would tend to agree with that definition, as inaccurate as it sometimes is. The only point to make was that species boundaries are not clear cut lines. Sometimes, similar species can interbreed, something that distant species cannot do. It fudges the lines a little when capabilities like that are retained, flawed though they are. Divergence, therefor, allows for reintegration between differing strains until the traits become different enough that some fatal flaw occurs in the offspring (for example, sterility).

  4. Better Beer? by RedLeg · · Score: 1

    Given the yeast they evolved, "Saccharomyces cerevisiae", does this mean we get better, or more intelligent beer?

    Red

    1. Re:Better Beer? by Samantha+Wright · · Score: 1

      Yes: these yeast produce less alcohol.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    2. Re:Better Beer? by Philomage · · Score: 1

      Okay, I know that "Saccharomyces cerevisiae" MUST mean something like "sugar eater found in wheat" but why, in that first instant of seeing the post, did my mind flash read "sweet cervix"? If only there were something I could consume that would slow down my intuitive thinking to the point that reading could catch up...

    3. Re:Better Beer? by pgward · · Score: 1

      Given the yeast they evolved, "Saccharomyces cerevisiae", does this mean we get better, or more intelligent beer?

      Red

      They couldn't really prove higher intelligence, but 6 packs should now contain 36 beers.

    4. Re:Better Beer? by rrohbeck · · Score: 1

      If my Latin doesn't fail me it means "sugar fungus from beer."
      Oh and that fuzzy reading comes with age. You get lazy, don't look closely and in 99.999% of the cases you still read the correct word. Or maybe it's just the brain got *that* good at pattern recognition.

    5. Re:Better Beer? by rrohbeck · · Score: 1

      Yay, intelligent beer design!
      That's why I prefer unfiltered wheat beer. The smart yeast collects at the bottom, you shake it up and pour it into your glass. Then you drink it and it goes straight to your brain, improving your intelligence. That's my hypothesis anyway.

    6. Re:Better Beer? by shutdown+-p+now · · Score: 1

      OMG; are you saying that Budweiser is people?!

    7. Re:Better Beer? by Anonymous Coward · · Score: 0

      No, but it might be an improvement.

  5. This is proof by idbeholda · · Score: 1

    That beer is the nectar of The Gods.

  6. Genesis by sakdoctor · · Score: 5, Funny

    God still holds the copyright for the original genesis event. It should have entered the public domain, but the copyright just keeps getting extended, and extended for billions of years. God keeps raking in the royalties and has no incentive to create new works, which is why you haven't heard anything from him lately.

    1. Re:Genesis by gtb · · Score: 1

      In further news, God says 'Meh, I did it in six days. I've got better things to do now' and settles back on the couch with Christoper Hitchens to have an all-night session watching season 2 of South Park that they downloaded from an illegal torrent.

    2. Re:Genesis by Anonymous Coward · · Score: 0

      Although God's written will says that the meek shall inherit the (copyright to) the Earth.

    3. Re:Genesis by Anonymous Coward · · Score: 0

      well, God's been creating new works on a daily basis. why does the sun rise and set at the said time? why does it still rain/snow? how come the trees shed leaves / get new leaves/ flowers etc. does evolution help them to do all of this? some places have droughts, some have floods, some have famines, some have earthquakes. why does it not happen on the sun and the sun fail to shine someday? but one day and one day soon thats going to change? and where will you be then?. well Charles Darwin would've beleived that there is a just almighty creator, by now.

    4. Re:Genesis by Tsingi · · Score: 1

      Hallelujah! I have seen the light.

    5. Re:Genesis by PRMan · · Score: 1

      The copyright hasn't been extended. It still expires 14 years after his death... Still, it seems like an eternity.

      --
      Peter predicted that you would "deliberately forget" creation 2000 years ago...
  7. Re:Yeasty "evolution" by samkass · · Score: 2

    Actually, the opposite of what you say is true. That's the whole point of using the word "selection" in the phrase "natural selection". Anything that helps the organism survive and reproduce better in its environment is a selective pressure. So if you postulate that there exists somewhere on the planet where multi-cellularism is a selective force, then this experiment replicates those conditions.

    --
    E pluribus unum
  8. Relation to yeast by pgward · · Score: 5, Funny

    Reading the comments on the physorg page made by intelligent design supporters, I have come to a conclusion. Some of us have not evolved far beyond yeast.

    1. Re:Relation to yeast by Samantha+Wright · · Score: 2

      You'll be pleased to know then that we're exactly as evolved as the yeast: three billion years or so. Some just hide it better.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    2. Re:Relation to yeast by Anonymous Coward · · Score: 0

      And they tend to clump similarly, sometimes even to the delicate shape of a flake.

  9. tl;dr by Azure+Flash · · Score: 1

    So they spent two months making the world's tiniest loafs of bread?

  10. Flocculation by Wookie+Monster · · Score: 3, Informative

    Yeast already has a natural ability to flocculate, differing by strain. All they did is use artificial selection to produce a new strain of yeast with higher flocculation. The article mentions that yeast evolved from a multicellular life form and that the next experiment will use single celled organisms which did not evolve this way. I suspect it will take much longer than 60 days to see any results.

    1. Re:Flocculation by qwak23 · · Score: 2

      According the paper (linked in several other comments, and is much more fascinating than the article), the clumps were not the result of flocculation.

      I am looking forward to seeing future experiments with other type of single celled organisms.

  11. Not that impressive by antifoidulus · · Score: 1

    College kids have been doing this for years and years, go walk around any dorm, new species of microscopic life are constantly evolving in the showers.

  12. Re:Organized trolling campaign on Slashdot by Anonymous Coward · · Score: 0, Offtopic

    Holy crap, your post history is almost entirely +5 karma whoring. I've never seen so many pandering, populist +5 comments.

  13. Re:Yeasty "evolution" by Samantha+Wright · · Score: 5, Insightful

    Well, it's not that hard to create a similar environment in the real world, they take too long to get grant money for. Consider, for example, a microbe growing in a hot spring that needs a very high temperature to function properly (like every molecular biologist's friend, Thermus aquaticus.) If that thing floats to the top of the pond, it might get cold and die. Evolutionary pressures such as sink-or-die aren't that implausible.

    Think of it this way: a random walk will get to every possible location eventually. If you push it in a certain direction, it'll simply get there sooner. But if it doesn't get there when you do, then there's no chance it'll ever get there on its own. Unless they tampered with the genes of the yeast in question, these results are completely legitimate.

    --
    Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
  14. Re:Yeasty "evolution" by pgward · · Score: 3, Insightful

    Once again, great successes hailed while ignoring the elephant in the room: the researchers cheated by selecting out certain ones (those that sank to the bottom.) in TRUE life-by-incremental-changes, every event is random, including which cells are selected out of the tube to prosper.

    False.

    The purpose of this "selection" was simply to simulate a larger environment. If this occurred in a big place relative to the size of the yeast, let's call this imaginary place the ocean, it is highly likely the yeast wouldn't be contained to a test tube. It would disperse on its own. Selecting certain ones and continuing to examine them is the same as zooming in and following the large ones in the ocean you'd like to examine. The centrifuge is not meant for culling, selective breeding or to "intelligently design evolution in yeast".

    N.B. I have no idea about the atmospheric requirements for this experiment as I skipped that part of the original article. For all I know the bigger place could have been a rock, a lake, a cloud or an iceberg. The argument is based upon the false implication that yeast only exists in constrained environments.

  15. Actually I thought Eukaryotes were the big jump by wisebabo · · Score: 4, Informative

    Not to diminish the importance of multi-cellularity (and of this discovery) but wasn't the development of Eukaryotes (cells with Nuclei and other differentiated organelles) the big step needed for complex life? I mean with chloroplasts you get plants and mitochondria (or mitoklorines for you Star Wars fans) you get animals.

    With multi-cellularity and prokaryotes you get strombolites (algal mats).

    That said, it shows that evolution can happen quite quickly and can overcome some serious obstacles in a short amount of time in a very limited scope (a laboratory workbench). When multiplied by geologic ages and oceans of room is it any wonder that life has evolved in so many fascinating ways?

    1. Re:Actually I thought Eukaryotes were the big jump by Samantha+Wright · · Score: 4, Informative

      Yeah... But! There are plenty of fancy single-celled eukaryotes that are fantastically dull. Multicellular life is still a pretty neat thing. You just wait; give molecular biology enough time and we'll see experiments that recreate the emergence of eukaryotes, animals, chordates, mammals, primates, hominids, and finally molecular biologists. Just give 'em time.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
    2. Re:Actually I thought Eukaryotes were the big jump by wisebabo · · Score: 1

      Yeah, that's what you think. One tiny little change and we could end up with just a planet in an evolutionary dead-end filled with anoxic bacteria and politicians!

    3. Re:Actually I thought Eukaryotes were the big jump by sconeu · · Score: 2

      That's an insult to the anoxic bacteria!

      --
      General Relativity: Space-time tells matter where to go; Matter tells space-time what shape to be.
    4. Re:Actually I thought Eukaryotes were the big jump by Anonymous Coward · · Score: 0

      Yeah, that's what you think. One tiny little change and we could end up with just a planet in an evolutionary dead-end filled with anoxic bacteria and politicians!

      How is that any different than what we have now?

    5. Re:Actually I thought Eukaryotes were the big jump by HeckRuler · · Score: 1

      A vote for Anscillio-I'd-have-a-better-name-if-wikipedia-was-up-itum is a vote for death. He'll get into office and feed on the surplus oxygen supply that the proud and noble Mycrill-wikipedia-is-still-down-llium built up for you. Vote M. today!

    6. Re:Actually I thought Eukaryotes were the big jump by Samantha+Wright · · Score: 1

      What about the independent candidate strain, Mycopleuro-just-disable-Javascript-illococcus? He's always been on my side.

      --
      Bio questions? Ask me to start a Q&A journal. Computer analogies available for most topics!
  16. Re:Organized trolling campaign on Slashdot by another_twilight · · Score: 0, Offtopic

    I had no idea who GreatBunzinni was until your crapflood.

    I see no evidence in your posts of GreatBunzinni using multiple accounts to shill. I see a possible AC post. I see someone questioning bonch.
    You on the other hand are a spammy bastard who is haunting Slashdot and amassing a GNAA-worthy number of FPs. One has to wonder whether you are paid for your attentiveness.

    I recognise some of the names on GreatBunzinni's list and thought they sounded a little 'shill'. Now this. It adds weight to my suspicions.

    If you are one of the aggrieved, respond to posts where they out you. Logged in. Maybe the GreatBunzini has included some names they shouldn't have. Until then, _your_ crusade has just confirmed the GreatBunzini's accusations, as far as I am concerned. Well done.

    With apologies for the offtopicness of this post.

  17. Yes - sounds like "grant time" by Moblaster · · Score: 5, Insightful

    I suspect it's not "evolution" at all, but subtly bad science (i.e. a scientist gunning for more grant money). DNA can express in many ways given varying environmental conditions, without the mutations that characterize true evolution -- and artificially forcing genetic drift by selecting for the bottom-clumpers is certainly VERY DIFFERENT from having gravity serve as the "selection pressure."

    It's well known DNA can express in many different ways without true evolution. We've come a long way from the theory of Lamarckian evolutionary theory (evolution of acquired characteristics). One is example: exons, which can express differently across generations based on environmental conditions-- without actual change to the DNA.

    I'm thinking this great discovery will get pounded upon by other biologists pretty quickly -- and put in its proper place as an interesting science experiment that really does not advance the field much if at all. INTERESTING evolution would be a group of mutations that lead to a multicellular outcome. That's NOT what these guys 1) demonstrated happened (multicellular DNA base-pair-causing mutations) or 2) proved was the actual genetic cause at the molecular-biology level.

    1. Re:Yes - sounds like "grant time" by airuck · · Score: 5, Informative

      10 yeast cells clumped together have more mass than 1 yeast cell. Therefore they sink to the bottom of a tube.

      Bzzt. Please review the difference between mass and density and the relationship between density and buoyancy.

      --
      First entomology, then virology, and finally bioinformatics systems. Bugs follow me wherever I go.
    2. Re:Yes - sounds like "grant time" by Eskarel · · Score: 5, Informative

      The summary is true, but ultimately misleading.

      This is evolution, and it did happen in months. What it doesn't account for is getting the clumping gene in the first place, and that the likelihood of getting selection pressures as extreme as the ones in the lab is fairly low.

      They've proven that yeast has the capacity to evolve in this way given the right selection pressures, which is interesting. With additional research they may be able to prove that many other single celled life forms have the same capacity, from which we may extrapolate that the gene responsible for this behavior either occurred very early or is a relatively minor mutation.

      The "more quickly than we believed" part is probably bogus. They applied extreme selection pressures to this particular colony of yeast and so they got an extreme time scale result the same would happen in any species if you extrapolated for the length of a given generation. You could do the same thing to humans for some arbitrary characteristic.

    3. Re:Yes - sounds like "grant time" by koekepeer · · Score: 4, Informative

      IIRC from the times when I used yeast in my PhD research, wild type (that means: not mutated) S. cerevisiae clumps in advanced stationary phase (end of growth curve, nutritional deprivation). Such circumstances happen more often that not in the real life of S. cerevisae: just imagine that in nature it cannot walk to the nearest grapevine and say 'hey lets do some sugar fermentation here'... no it depends on being able to survive in times of drought. ne way it does that is through forming spores, another way of temporarily surviving could be this kind of 'clumping'. So, the 'clumping gene' is already there, it is just expressed in certain circumstances, circumstances easily simulated in a lab situation.

      In my mind the argument would revolve around self-organisation versus (old, dormant) organisational information still present in the S. cerevisae genome. I'm bummed I cannot access the original article at the PNAS site, else I could comment on that in a bit more detail.

    4. Re:Yes - sounds like "grant time" by robotkid · · Score: 5, Insightful

      I suspect it's not "evolution" at all, but subtly bad science (i.e. a scientist gunning for more grant money). DNA can express in many ways given varying environmental conditions, without the mutations that characterize true evolution -- and artificially forcing genetic drift by selecting for the bottom-clumpers is certainly VERY DIFFERENT from having gravity serve as the "selection pressure."

      It's well known DNA can express in many different ways without true evolution. We've come a long way from the theory of Lamarckian evolutionary theory (evolution of acquired characteristics). One is example: exons, which can express differently across generations based on environmental conditions-- without actual change to the DNA.

      I'm thinking this great discovery will get pounded upon by other biologists pretty quickly -- and put in its proper place as an interesting science experiment that really does not advance the field much if at all. INTERESTING evolution would be a group of mutations that lead to a multicellular outcome. That's NOT what these guys 1) demonstrated happened (multicellular DNA base-pair-causing mutations) or 2) proved was the actual genetic cause at the molecular-biology level.

      IAAMBP (I am a molecular biophysicist) and I actually just finished discussing this article at work before seeing it on /. The parent post is an odd mix of insightful comments and flamebait so I'll respond to the former. BTW the actual research article itself is free for everyone to read, thanks to the authors shelling out an extra 1K$ to allow public access. I'll link it below:

      http://www.pnas.org/content/early/2012/01/10/1115323109.full.pdf+html

      If you would prefer having to pay 10-30$ for the privilege of reading what your tax dollars already paid for instead of this commie "open access" stuff, please call your congressman and tell him/her to support HR bill 3699.

      To contextualize this work: the path that led from single-celled eukaryotes to multicellular organisms is one of those $64,000 questions in evolutionary biology, that weird crossover from outright competition to coordinated teamwork. The advantages of being multicellular really pay off for big, complex organisms, but why on earth would it have been advantageous for a small group of a few dozen cells? This paper does not answer the question by any stretch, but it does provide a few interesting, unexpected clues. Most groups asking this question focus on Volvocine algae, which evolved multicellularity so recently such that you can compare them side by side with their nearly identical single-celled cousins in the very same pond. But these are not the most convenient organisms to work with; they have a very complicated life cycle, and have a monster-sized genome for their diminutive size (~140 million bases) and doing genetics on such beasties is still quite difficult and tedious.

      Yeast, on the other hand, are really easy to work with and are actually pretty boring in most respects; ~12 million base pairs which have all been sequenced many times over. You can actually custom order them with any gene you want deleted just to see what happens, it's that well characterized. So the observation that artificially selecting for clusters in boring yeast leads to weird snowflake-shape colonies with something that resembles "programmed cell death" in higher organisms is completely unexpected an novel. "Programmed cell death" literally means that the colony has found a way to promote what's good for the colony over what's good for the individual, even though these are only 60 days removed from being a pretty ordinary yeast.

      Is this how it happened billions of years ago? Probably not, this is just boring yeast after all, and I can't think of a scenario where sinking to the bottom is a life-or-death advantage. In the case of the algae, it would in fact be suicidal to sink beyond where the

    5. Re:Yes - sounds like "grant time" by Anonymous Coward · · Score: 0

      and artificially forcing genetic drift by selecting for the bottom-clumpers is certainly VERY DIFFERENT from having gravity serve as the "selection pressure."

      Why? s/bottom-clumpers/dark ones/ and s/gravity/colour/ and it's the classic peppered moth example.

      Or are you nitpicking about it not the colour/gravity, but rather an effect of that?

    6. Re:Yes - sounds like "grant time" by harley78 · · Score: 1

      well, the clumps don't survive....-a- spore does. In dire times that spore gets wafted up and propagates somewhere else...you're thinking too localized man. Maybe they were just scooping out the centrifuge goop to see what would grow?

    7. Re:Yes - sounds like "grant time" by RDW · · Score: 4, Interesting

      I'm betting they chose yeast because now they can get the interesting ones sequenced for a few thousand each, which is completely feasible even with a very modest grant compared to what it would cost for algae (or anything that isn't yeast or e. coli really).

      Just skimmed through the paper and was almost surprised to see they haven't done the sequencing (yet?) - identifying the presumed mutations would have made this study much more interesting. A 12 Mb genome doesn't need much NGS capacity! Until then, I don't think we can rule out epigenetic inheritance, which has previously been demonstrated in yeast.

    8. Re:Yes - sounds like "grant time" by Hognoxious · · Score: 2

      the likelihood of getting selection pressures as extreme as the ones in the lab is fairly low.

      Yeah, it's not like you get large vessels full of water, yeast, and things that yeast likes to eat anywhere else

      Brewers were distinguishing between top and bottom yeasts before God got his driving license; certain styles of beer work better with one type than the other.

      --
      Confucius say, "Find worm in apple - bad. Find half a worm - worse."
    9. Re:Yes - sounds like "grant time" by GauteL · · Score: 5, Interesting

      First. Thank you for a very interesting post which provides insight that is still understandable by those of us who are not molecular biophysicists. This is not always easy to do.

      I may now be able to provide some insight into Slashdot's science discussions, which you may or may not have discovered yet....

      A good scientist (which I'm sure you are) will read new research with an open mind combined with healthy scepticism. He/she won't automatically discard papers due to confirmation bias, and they won't shout "CORRELATION DOES NOT EQUAL CAUSATION" every single time they read reporting of a paper which suggests some correlation, because they realise that demonstrating correlation is often a necessary first step towards establishing causation and as such it is still novel and useful to publish papers that suggests correlation.

      Slashdot, however, is home to some brilliant scientists who are completely drowned out by the masses of cynical, semi-clever "know-it-alls" who love to demonstrate their cleverness by shooting down any new research, often without bothering to read it first. They will shout "bad science" at the top of their lungs as a knee-jerk reaction to any perceived short coming, even if this short coming is just a limitation in scope of a paper or simply just ignorance on their own part. If the paper doesn't fully answer every possible question, it is worthless.

    10. Re:Yes - sounds like "grant time" by marcosdumay · · Score: 1

      The relevant fact here is how terminal velocity relates to volume.

    11. Re:Yes - sounds like "grant time" by Tsingi · · Score: 2

      Brewers were distinguishing between top and bottom yeasts before God got his driving license; certain styles of beer work better with one type than the other.

      Just to complete that thought, ales are top fermenting beers, lagers are bottom fermenting. I suppose there is some relation to aerobic and anaerobic fermentation there.

    12. Re:Yes - sounds like "grant time" by __aaltlg1547 · · Score: 1

      Only if genes for the desired characteristics were already in the population you started with could it be guaranteed. Yeast, as noted, have multicellular ancestors so there were probably clumping genes in their starting population.

      That said, we can study the responses in human populations that took place in response to changes in diet and climate.

    13. Re:Yes - sounds like "grant time" by Anonymous Coward · · Score: 0

      more precisely, drag, which can be only be related to volume when using a simple model like a sphere. otherwise, surface shape, roughness, electric charge, center of mass, will also play a role.

    14. Re:Yes - sounds like "grant time" by CODiNE · · Score: 1

      Occam's razor said it was due to mutations and not some weird epi-genetic x-factor we haven't discovered yet.

      Occam's razor is useful for determining the most likely answer, not for establishing fact. I don't think you were asserting it as a fact, but it can be read it that way.

      (Tired of Occam being used as proof in arguments)

      --
      Cwm, fjord-bank glyphs vext quiz
    15. Re:Yes - sounds like "grant time" by Anonymous Coward · · Score: 0

      Your post is not insightful. It is complete non-sense. Mutation is not evolution nor the mark of 'evolution'. Just the statement "DNA can express itself in many different ways without true evolution" makes my head hurt. Other biologists? I sincerely doubt you are biologist or at least a biologist with any knowledge of evolution or genetics.

    16. Re:Yes - sounds like "grant time" by _0xd0ad · · Score: 1

      ales are top fermenting beers, lagers are bottom fermenting

      Sometimes I get the impression that was an afterthought created for no other reason than to find a difference between the two of them.

      I suppose there is some relation to aerobic and anaerobic fermentation there.

      Books could and probably have been written on the subject. I might be interested in reading the Cliff Notes version of one or two of them.

    17. Re:Yes - sounds like "grant time" by Xoltri · · Score: 3, Informative

      No, fermentation to produce alcohol is completely anaerobic regardless of if it is an ale or a lager. There is an initial aerobic phase that the yeast use to reproduce, but once the dissolved oxygen is used up they start the good kind of fermentation, the kind that makes alcohol and co2. Furthermore, I'm not sure what date to assign to when "God got his driving license", however according to Wikipedia lager yeast (otherwise known as bottom fermenting) dates back only till the 1400's.

      --
      -Xoltri
    18. Re:Yes - sounds like "grant time" by khallow · · Score: 1

      Slashdot, however, is home to some brilliant scientists who are completely drowned out by the masses of cynical, semi-clever "know-it-alls" who love to demonstrate their cleverness by shooting down any new research, often without bothering to read it first. They will shout "bad science" at the top of their lungs as a knee-jerk reaction to any perceived short coming, even if this short coming is just a limitation in scope of a paper or simply just ignorance on their own part. If the paper doesn't fully answer every possible question, it is worthless.

      I see you're living the dream. Most of the "know-it-alls" do listen to good arguments and facts. But someone has to provide them first.

    19. Re:Yes - sounds like "grant time" by Anonymous Coward · · Score: 2, Interesting

      Is there some environment where sinkers get more nutrients and floaters get eaten or killed?

      This is saccharomyces cerevisiae, the yeast used to make beer. Brewers have been selecting for floculent yeast since long before scientists started playing with them. The fact that this isn't mentioned once in the article invalidates the entire thing for me. This is not wild yeast learning a new trait. It's a well known trait being selected for. When I was brewing, I spent many hours watching yeast colonies, which vary wildly from strain to strain. Personally, I prefer the clearer taste that come from floculent yeast.

    20. Re:Yes - sounds like "grant time" by NeutronCowboy · · Score: 1

      Occam's razor is not a proof, but a heuristic for what to investigate. In this case, people will continue their investigation by looking at possible mutations, and not look for something brand new. They might, but chances are that they'll run into a dead-end. And unless you have already tenure, a dead-end can be very costly.

      --
      Those who can, do. Those who can't, sue.
    21. Re:Yes - sounds like "grant time" by skydyr · · Score: 1

      The other thing about Occam's razor is that it only tells you that if you can account for something with either ABC or ABCD you should not involve D. If you are trying to compare between ABC and ABDE it is useless.

    22. Re:Yes - sounds like "grant time" by Anonymous Coward · · Score: 0

      i.e. a scientist gunning for more grant money

      Fuck you. Just because you're a money grubbing asshole doesn't mean that everyone else shares your deplorable motivations. Quit projecting them on others.

    23. Re:Yes - sounds like "grant time" by Jerry · · Score: 1

      "IAAMBP (I am a molecular biophysicist) and I actually just finished discussing this article at work before seeing it on /. The parent post is an odd mix of insightful comments and flamebait so I'll respond to the former. BTW the actual research article itself is free for everyone to read, thanks to the authors shelling out an extra 1K$ to allow public access. I'll link it below:

      http://www.pnas.org/content/early/2012/01/10/1115323109.full.pdf+html [pnas.org]

      If you would prefer having to pay 10-30$ for the privilege of reading what your tax dollars already paid for instead of this commie "open access" stuff, please call your congressman and tell him/her to support HR bill 3699."

      So you would prefer that if the taxpayer wants to read published papers about work their taxes funded they should pay the Journals who knows how much for a printed copy MAILED to them. It would have to be priinted and mailed because the text of the law states:

      "To ensure the continued publication and integrity of peer-reviewed research works by the private sector.
      Be it enacted by the Senate and House of Representatives of the United States of America in Congress assembled,

      SECTION 1. SHORT TITLE.
      This Act may be cited as the `Research Works Act'.

      SEC. 2. LIMITATION ON FEDERAL AGENCY ACTION.
      No Federal agency may adopt, implement, maintain, continue, or otherwise engage in any policy, program, or other activity that--
      (1) causes, permits, or authorizes network dissemination of any private-sector research work without the prior consent of the publisher of such work; or
      (2) requires that any actual or prospective author, or the employer of such an actual or prospective author, assent to network dissemination of a private-sector research work.

      SEC. 3. DEFINITIONS.
      In this Act:
      (1) AUTHOR- The term `author' means a person who writes a private-sector research work. Such term does not include an officer or employee of the United States Government acting in the regular course of his or her duties.
      (2) NETWORK DISSEMINATION- The term `network dissemination' means distributing, making available, or otherwise offering or disseminating a private-sector research work through the Internet or by a closed, limited, or other digital or electronic network or arrangement.
      (3) PRIVATE-SECTOR RESEARCH WORK- The term `private-sector research work' means an article intended to be published in a scholarly or scientific publication, or any version of such an article, that is not a work of the United States Government (as defined in section 101 of title 17, United States Code), describing or interpreting research funded in whole or in part by a Federal agency and to which a commercial or nonprofit publisher has made or has entered into an arrangement to make a value-added contribution, including peer review or editing. Such term does not include progress reports or raw data outputs routinely required to be created for and submitted directly to a funding agency in the course of research.
      "

      Notice that the forms of prohibited dessemination include "the Internet or by a closed, limited, or other digital or electronic network or arrangement", which would include the putative reader paying for access to a PDF link on a proprietary Journal website.

      Also note that the term "private-sector research" is misleading since any research that the taxpayer supports is, by law, PUBLIC research. I suspect that in a couple years, when the data i

      --

      Running with Linux for over 20 years!

    24. Re:Yes - sounds like "grant time" by Anonymous Coward · · Score: 0

      You're an idiot, please first read up on evolution, then castrate yourself and anyone related to you, you stupid mutt.

    25. Re:Yes - sounds like "grant time" by robotkid · · Score: 1

      >

      Also, the flamebait you so maticulously tried to avoid you yourself introduced when you dismissed the taxpayers rights with the word "COMMIE".

      Since I helped pay for that research I do not feel it right that I have to pay AGAIN, this time to a middle man, for the previledge of reading about the research. And, if you knew as much about OpenSource as you apparently do about biology, you'd know that OpenSource isn't a Marxist philosophy, contrary to the assertions of the Ballmer, who heads the world's biggest monopoly and is in the process of extending that monopoly on PCs with the introduction of the EUFI HD bootlock. Since Windows is as susceptible as ever to malware the only reason for UEFI is to prevent users of Linux from being able to replace Windows with Linux or to dual boot with it. If Microsoft wants to lock up hardware they should take Apple's route and manufacture their own, and not force independent PC OEMs to act as wholly owned subsidiaries of Microsoft. But, if your flamebait meant anything it probably means that you use a Mac or Win7 and could care less if others wanted the freedom to choose another OS. As long as your ox is not getting gored...

      You do understand that was sarcasm, right? Now I can't tell if you are being sarcastic too.

        As scientists, we have to pay 3-5K$ of grant money to get something published in a journal in "page fees", after it passes peer review from experts volunteering their time. That's before any "open access" fee. Then, our parent institution has to pay exorbitant subscription fees so that the guy down the hall has the legal right to read the work I did, all using taxpayer money. And if I happened to work in cancer research (I don't), some taxpaying sick schmuck at a hospital somewhere might want to read my paper and they'd still have to pay like 30$ to read it. I think I can safely say >95% of scientists would prefer an overhaul of the cost structure so that anyone who wants to read an article can do so for free

      I tried to print 50 copies of MY OWN paper once at Kinkos to hand out at a conference. Kinko's would not do it without a waiver from the copyright holder. I very self righteously (and erroneously) complained that as the author, I was a copyright holder, and as a taxpayer, everyone should have a right to see it. Kinkos pointed out that neither is true, the journal holds the copyright and technically I have to get written permission to reprint my own work.

      So I went and bought my own color printer. Problem solved.

    26. Re:Yes - sounds like "grant time" by TheCarp · · Score: 2

      Yes and no. Look at it again and you will see this is a more extreme version.

      This isn't just about top or bottom fermenting. Certainly, top fermenters are being culled here but, so are many bottoms. This isn't just "does it fall" but "how fast does it fall".

      Imagine this.... mix up some wort (yes, I am a brewer too). Pitch your yeast... wait 12 hours, then take the bottom yeast. Rinse and repeat.

      So now, you have a real selective pressure. Before...all yeast that could live or made it to the bottom would live and reproduce. Now we are only taking those that fall within 12 hours. So even bottom fermenters that are still active up top or in the middle for a while are being deselected. Much more extreme.

      it makes sense... clumps settle faster, so putting a time pressure on the selection greatly improves the selection for clumps vs single cells.

      --
      "I opened my eyes, and everything went dark again"
    27. Re:Yes - sounds like "grant time" by Xoltri · · Score: 2

      Well, the actual main difference is temperature. Lagers are typically fermented at 8-10c. Ale's are typically fermented at 18c or higher. This results in different flavour profiles, ales typically have a more fruity 'estery' character, where as lagers are more crisp, clean, and possibly sulfury.

      Also, ale fermentation, because of the warmer temperatures, are typically more vigorous. The yeast are able to eat the sugar more quickly. I guess it's possible that it is this vigorous fermentation that is the cause for the yeast to rise to the top, although even in an ale there is still lots of yeast on the bottom working too.

      Another difference is that a lager yeast can also ferment at warm ale temperatures (sometimes creating what's known as a steam beer), where as an ale yeast often will go dormant and not ferment at lager temperatures.

      --
      -Xoltri
    28. Re:Yes - sounds like "grant time" by pclminion · · Score: 2

      Just to complete that thought, ales are top fermenting beers, lagers are bottom fermenting. I suppose there is some relation to aerobic and anaerobic fermentation there.

      There is no relationship between top/bottom and aerobic/anaerobic whatsoever. Fermentation is anaerobic, period. The difference between lager and ale is the strain of yeast used, and the temperature at which fermentation occurs. Saying that a beer is fermenting "on the bottom" or "on the top" just indicates that somebody has never actually watched beer ferment before. Fermenting beer actually convects inside the fermenter if it really gets going how it's supposed to. There's no "top" or "bottom" to it, it's just a big roiling mess. And all beer yeast, whether lager or ale, settles to the BOTTOM of the fermenter when it's done doing its thing.

      Lager fermentation is calmer, sure, but that's because it happens at a lower temperature!

    29. Re:Yes - sounds like "grant time" by the+biologist · · Score: 2

      'Genetic drift' actually refers to genetic change in an undirected, random manner. Vast space and time separations are not needed. You would explicitly expect genetic drift in a test-tube of yeast. Finding it would not be an interesting result in any way.

      Yes, I actually am a biologist, a year away from completing my PhD on the subject.

    30. Re:Yes - sounds like "grant time" by jc42 · · Score: 1

      Is there some environment where sinkers get more nutrients and floaters get eaten or killed?

      This is saccharomyces cerevisiae, the yeast used to make beer. Brewers have been selecting for floculent yeast since long before scientists started playing with them.

      Or more generally, for anything living in a lake or other body of water (at least those shallow enough that light reaches the bottom), there's an obvious selection for travel to the bottom: More nutrients are available in the bottom mud than higher up in the clear water. So we'd expect all sorts of aquatic single-cell life forms to evolve ways to find the bottom. Gravity is much less effective in water than in air, but it's a gradient that will lead you to the bottom. Pressure and light intensity are two other gradients that will get you there.

      OTOH, algae like light and build most of their mass out of the water and dissolved CO2, with the help of incoming photons, so they have selective pressure to be at the top of the water.

      It's not just yeast researchers; similar studies on other microorganisms should take into account the possibility that they're already selected for vertical motion through the water column.

      Showing that single-cell organisms aren't hiding a clumping ability in their genome is tricky. This is part of why scientists say it's difficult to study the development of multicellularity. Every living thing on the planet has billions of years of ancestry, and we aren't even close to being able to ferret out all the obscure adaptations hiding in a critter's genome but not expressed in the samples that you're studying.

      Such complexities are why scientists have learned to be skeptical until there has been significant replication of observations.

      --
      Those who do study history are doomed to stand helplessly by while everyone else repeats it.
    31. Re:Yes - sounds like "grant time" by f97tosc · · Score: 1

      selecting for the bottom-clumpers is certainly VERY DIFFERENT from having gravity serve as the "selection pressure."

      No it is not. Selective pressure just means that individuals have different survival rates depending on some variable. This is exactly what happened. Sure it would have been more elegant if they had a volcanic heat vent kill off the floaters but selecting them by hand will set up the same pressure. The key point is that they picked them based on actual physical behaviors and characteristics, and in doing so they set in place incentives for genetic drift and, yes, for new mutations to take hold.

      INTERESTING evolution would be a group of mutations that lead to a multicellular outcome. That's NOT what these guys 1) demonstrated happened (multicellular DNA base-pair-causing mutations) or 2) proved was the actual genetic cause at the molecular-biology level.

      Not sure why you are so convinced that A) No mutations took place and B) this makes the result not interesting. Claerly A) is complete speculation on your part, and as to B) the editors of PNAS apparently disagree.

    32. Re:Yes - sounds like "grant time" by the+biologist · · Score: 1

      It's well known DNA can express in many different ways without true evolution. We've come a long way from the theory of Lamarckian evolutionary theory (evolution of acquired characteristics). One is example: exons, which can express differently across generations based on environmental conditions-- without actual change to the DNA.

      An exon is simply the part of a gene which leaves the nucleus. Essentially what you've said is that genes are expressed differently under different conditions. This is true, but this is not what the researchers are seeing.

      If the yeast cells were to clump when they were exposed to a specific drug, but then fragment again when the drug went away, your point would have some utility. In the conditions they have described, there is either a bona fide genetic change (change in the DNA) or there is an epigenetic change (change in the DNA) involved.

      Yes, I actually am a biologist, a year away from completing my PhD on the subject.

    33. Re:Yes - sounds like "grant time" by the+biologist · · Score: 1

      Yeast are used because they are easy and cheap to grow in large numbers and are relatively simple to do a large range of experiments on.

      Why haven't they already sequenced them? It takes a big chunk of time. I've been waiting for the past three months for the genomes of a set of strains I sent off for deep-sequencing.

      Also, when my boss spoke with the researcher in question, they didn't seem interested in what the specific mutations involved in this transition were, but rather how the change can impact viability under specific scenarios. They may have changed their mind since then. (If I was really interested, I'd call them up and ask.... I've got enough on my plate, so I'm not that interested.)

      Yes, I actually am a biologist, a year away from completing my PhD on the subject.

    34. Re:Yes - sounds like "grant time" by robotkid · · Score: 1

      Is there some environment where sinkers get more nutrients and floaters get eaten or killed?

      This is saccharomyces cerevisiae, the yeast used to make beer. Brewers have been selecting for floculent yeast since long before scientists started playing with them. The fact that this isn't mentioned once in the article invalidates the entire thing for me. This is not wild yeast learning a new trait. It's a well known trait being selected for. When I was brewing, I spent many hours watching yeast colonies, which vary wildly from strain to strain. Personally, I prefer the clearer taste that come from floculent yeast.

      You, sir, are hereby promoted to "King of the Lab". I had this nagging feeling it would be something like this, but I missed the connection completely!

    35. Re:Yes - sounds like "grant time" by cusco · · Score: 1

      In the case of partial dessication the clumps would survive much better than single yeast cells without the extreme cost of forming spores. They would probably survive poisoning and predation better as well.

      --
      "Think about how stupid the average person is. Now, realise that half of them are dumber than that." - George Carlin
    36. Re:Yes - sounds like "grant time" by Evets · · Score: 1

      Right on target (and it's not just slashdot).

      Debate is healthy, and it leads to better research, fantastic ideas, and every once in a while, something revolutionary.

      But if all the negative armchair scientists out there actually buckled down and did some actual research of their instead of spending their time trying to knock down somebody who accomplished something we would be in a much better place.

      An open mind isn't something terribly difficult to cultivate.

    37. Re:Yes - sounds like "grant time" by ceoyoyo · · Score: 1

      You get pretty fast "evolution" when you select for people with blue eyes.

    38. Re:Yes - sounds like "grant time" by RDW · · Score: 1

      Why haven't they already sequenced them? It takes a big chunk of time. I've been waiting for the past three months for the genomes of a set of strains I sent off for deep-sequencing.

      If you're not tied to a local genome centre you might want to try a different service provider - if the project isn't huge there are companies that can deliver data a great deal faster than that (and plenty of competition for your business).

    39. Re:Yes - sounds like "grant time" by Eskarel · · Score: 1

      Evolution is not just the mutations which create new traits, it's also the ways in which selection pressures modify a population. This is referred to as micro evolution as opposed to macro evolution. Even most creationists believe in micro evolution because we have irrefutable evidence that it exists because we have ourselves caused it to happen. The cow as we currently know it may not have evolved naturally, but it did evolve, it is a distinct species from its wild ancestors and it was created because selection pressures created a scenario wherein individuals which exhibited cow like traits had better chances to survive and breed.

      Creating a new species isn't just about having a mutation, mutations happen every day, it's also about conditions favoring that mutation to the extent that a population is created which can eventually separate into a new species. You might start a new species with one creature, but unless that mutation is passed on to a significantly large population you'll never actually get the new species.

    40. Re:Yes - sounds like "grant time" by the+biologist · · Score: 1

      Oh, we've already had it bumped because the primary vendor/collaborator was experiencing problems.

    41. Re:Yes - sounds like "grant time" by Anonymous Coward · · Score: 0

      One of the fundamental differences between Ale and Lager yeasts (They're a different type of yeast. Lager Yeast is Saccharomyces pastorianus) is that Lager yeast can break down melibose whereas ale yeasts can't.

    42. Re:Yes - sounds like "grant time" by ceoyoyo · · Score: 1

      I'm confused. Were you replying to my post, or just writing a miniature essay about evolution? If the former, do you think you could provide some clue as to how what you said relates?

    43. Re:Yes - sounds like "grant time" by Eskarel · · Score: 1

      My point was in response to your comment that selecting for people with blue eyes wouldn't be evolution.

      Evolution is the process by which differentiation occurs due to selection processes. Yes, taking a population of humans and killing or sterilizing everyone with a certain eye color is a rather pointless example, but you've changed the genetic makeup of that population. True you haven't created a new species, but evolution is the process of change, not just the end result. You don't just all of a sudden say "Oh, I've got a new species, now evolution has occurred."

    44. Re:Yes - sounds like "grant time" by ceoyoyo · · Score: 1

      I think you'd find that most experts would disagree that selecting all the blue eyed individuals is evolution. Making it more likely for people with blue eyes to breed, certainly, but since blue eyes are a recessive trait, having a hard selection for them will eliminate all other eye colours in a single generation. You can call it evolution if you really want, but the example has nothing to teach us about what happens naturally.

    45. Re:Yes - sounds like "grant time" by Eskarel · · Score: 1

      It's a trivial example certainly, given it's a recessive trait with a fairly simple gene pattern it's probably about the most trivial example you could take, much more so than this particular experiment. Nor was it my intention to imply they were similar, merely that selecting for an existing trait is fairly easy if you are rigorous enough in your selection processes.

      That said, performing even the trivial human example could the first step along a continuum. After this point you have a population which is genetically different from the rest of the species. Evolution is a lot of little steps, maybe the blue eyed folks haven't evolved, but that's a little bit like looking at the moment a levee breaks and ignoring all the build of water that got you there. Generally speaking water doesn't just magically fill a damn or overflow a levee, the individual drops which get added may not make much difference, but when you're looking at a process of change, where do you draw the line? Do you count the original mutation, even if it may only have affected one individual? Do you wait until a unique population has been created(as would be the case with the blue eyed folks)? Do you not count it as evolution until there's a certain amount of difference from the baseline? Are you waiting for a new species? How do you determine where in a process of change that process has occurred?

      Natural and artificial selection acts on all species all the time, a lot of the time it acts to keep things exactly the way they are, but that doesn't mean it's not acting. I'm arguing that there's a distinction between saying that something has "evolved" and the process of "evolution".

  18. Re:Yeasty "evolution" by Daniel+Dvorkin · · Score: 0

    in TRUE life-by-incremental-changes, every event is random, including which cells are selected out of the tube to prosper

    Crawl back under your rock. In a few hundred million years, your descendants may develop something resembling rudimentary intelligence.

    --
    The correlation between ignorance of statistics and using "correlation is not causation" as an argument is close to 1.
  19. The joy of ignorance by Anonymous Coward · · Score: 0

    What we humans don't know is impressive.

  20. so dna mutation over generation is not enough for by unity100 · · Score: 1, Troll

    you.

    http://www.newscientist.com/article/dn14094-bacteria-make-major-evolutionary-shift-in-the-lab.html

    and you need bacteria not only to evolve in dna, but also develop into a multicellular organism. in your lifetime.

    please.

  21. Re:Organized trolling campaign on Slashdot by Anonymous Coward · · Score: 0

    So you believe that a bunch of people who share the same opinions about Google means that they're part of a "rapid response team" hired by Microsoft? Really?

    Do you read the posts you're replying to?

  22. Re:Organized trolling campaign on Slashdot by larry+bagina · · Score: 0, Troll

    I have a theory. It's not pro-microsoft shills or rogue google Kenya/India employees or whatever troll conspiracy shit you think it is.

    It's actually Kevin Rose.

    The digg guy.

    They fucked the pooch on their last redesign. So now they're trying to turn slashdot into a cesspool to bring back eyeballs. They also used their elite hacking skills to update the slash codebase with all the gay facebook/twitter/google+ buttons.

    --
    Do you even lift?

    These aren't the 'roids you're looking for.

  23. Re:the way I see it... by icebraining · · Score: 2

    Except he didn't plan the form, look or workings of the organism, which means he didn't actually design.

  24. Re:so dna mutation over generation is not enough f by tibit · · Score: 1

    This is quite informative. The simplistic experiment in the TFA seems to be just that: simplistic. IOW - bad science.

    --
    A successful API design takes a mixture of software design and pedagogy.
  25. It's just brewers yeast. by slackware+3.6 · · Score: 0

    It is cheap source of very good quality proteins, vitamins and minerals I put 2 spoonfulls in my orange juice in the morning. If you do eat it make sure it is the deactivated (dead) kind from the supermarket or health shop or it will start to grow in you.

    1. Re:It's just brewers yeast. by shutdown+-p+now · · Score: 1

      If you do eat it make sure it is the deactivated (dead) kind from the supermarket or health shop or it will start to grow in you.

      It it does, do I get any super mutant abilities?

    2. Re:It's just brewers yeast. by Hognoxious · · Score: 1

      If you consider farting to be a special power, then yes.

      --
      Confucius say, "Find worm in apple - bad. Find half a worm - worse."
    3. Re:It's just brewers yeast. by gmhowell · · Score: 1

      If you do eat it make sure it is the deactivated (dead) kind from the supermarket or health shop or it will start to grow in you.

      It it does, do I get any super mutant abilities?

      If you take it in the proper manner (suspended in 12 ounces of beer) it gets you drunk.

      --
      Jesus was all right but his disciples were thick and ordinary. -John Lennon
    4. Re:It's just brewers yeast. by Anonymous Coward · · Score: 0

      I think you need to "lather, rinse, repeat" a few times before the drunkenness sets in. Unless you're a lightweight

  26. Re:Organized trolling campaign on Slashdot by Anonymous Coward · · Score: 0

    No nerve was struck. I just found it shocking that someone would actually believe a random list of names and a URL, and then continue to justify that belief, complete with nutty implications that I'm getting paid to post (uh, does that mean you are too?). I suggest going back to karma whoring for more +5s.

  27. Re:the way I see it... by arthurpaliden · · Score: 1

    If there was an 'intelligent designer' then why are the sewer outflows in the middle of the play ground.

  28. Re:STFU /.ers by jimmydevice · · Score: 0

    It's snowing, Piss off...

  29. Re:Organized trolling campaign on Slashdot by Anonymous Coward · · Score: 0

    No nerve was struck.

    Of course there wasn't.

    I suggest going back to karma whoring for more +5s.

    You used that insult against AngryDeuce. Your material is getting stale. Or is the script that shallow?

  30. They fast tracked the first billion or so years by viperidaenz · · Score: 0

    Now we just have to wait another 1 or 2 billion years and those test tubes will have people inside them

  31. Re:the way I see it... by tool462 · · Score: 1

    He designed it to the same extent that some people design software. But that probably says more about the coders than him...

  32. Re:STFU /.ers by mosb1000 · · Score: 0

    Doctor, heal thyself?

  33. Re:the way I see it... by gmhowell · · Score: 1

    If there was an 'intelligent designer' then why are the sewer outflows in the middle of the play ground.

    Because for some people sewer outflows ARE a playground, especially when the playground is under the effects of a red tide.

    --
    Jesus was all right but his disciples were thick and ordinary. -John Lennon
  34. Re:the way I see it... by Anonymous Coward · · Score: 0

    The reason is the same as why skyscrapers have their water and drain conduits located together. They're related, and it simplifies construction.

    Having a specialized playground, and a dedicated sewer outflow would only waste energy, proteins and time. Be glad they're not all combined in one super mouth-tongue-ear-butt-navel, because that could've been more biologically efficient. But, we lucked out.

  35. Re:the way I see it... by Anonymous Coward · · Score: 0

    Because if there's no grass on the field you should play in the mud.

  36. Re:Organized trolling campaign on Slashdot by Canazza · · Score: 2

    I think if anyone left Digg to come to Slashdot, the next stage would be suicide, not going back to Digg.

    --
    It pays to be obvious, especially if you have a reputation for being subtle.
  37. Re:the way I see it... by St.Creed · · Score: 1

    It's still a pretty bad decision for *most* people.

    And also: could this designer please fix my lung-design so the exhaust is on the bottom where it used to be when we were in the prototype phase (codename "monkey")?

    My eyes could use an upgrade as well. And while I applaud the decision to incorporate a spare kidney, I would have preferred a heart and liver that is split in two smaller, separate entities as well. We could have one lung with a heart and a liver on each side, drastically reducing the chance of total failure. And also: why no distributed brain nodes? I mean, decentralized processing works for some other species (lobsters) so why not us? And going on that note: there are species that don't get cancer - I'd really like that design feature incorporated in Homo Sapiens 2.0.

    Seriously, how intelligent IS this designer if I can improve the designs in 5 minutes of thinking?

    --
    Therefore, by the (faulty) logic you're using, you're just a cow with a keyboard - osu-neko (2604)
  38. Re:so dna mutation over generation is not enough f by harley78 · · Score: 1

    sweet, a completely different experiment using completely different organisms. You showed him! (Although it is a much better example of "evolution").

  39. Division of labor? by Culture20 · · Score: 1

    "Some cells dying so that others can grow or reproduce" isn't division of labor, it's some individual yeasts in the colony not getting the nutrients the need, and dying as a result. Just because they're clumpy doesn't make them a single creature...

  40. Already common knowledge among brewers by Just+Brew+It! · · Score: 3, Insightful

    I brew (and judge) beer... different strains of brewers yeast already have widely varying behaviors with regards to how they settle out. Yeast with "low flocculation" tend to remain in suspension for weeks, consuming more of the sugars (drier, more alcoholic beer); yeast with "high flocculation" tend to clump together and settle after a few days, leaving more residual sugar (sweeter/heavier beer). This is widely known already in the brewing community. These strains have evolved over the years to suit the preferences and procedures of individual breweries. So all these guys have really done is to repeat in a controlled environment the same selective breeding that brewers have been doing (whether they understood it or not) for centuries.

    Take a look here; if you click through to each individual strain of yeast, you'll see that there's a spec for flocculation (tendency to clump) and attenuation (tendency to consume sugars); there's a pretty good (though not perfect) inverse correlation between the two.

    The only thing really novel here is the claim that these yeast clumps somehow represent a first step towards multi-cellular life. Interesting, but -- while I'm not dismissing it out-of-hand -- I'm definitely taking it with a pinch of salt.

    1. Re:Already common knowledge among brewers by Lithdren · · Score: 1

      Yeah..except for the fact that they state, rather specifically, that the clumping is NOT a result of flocculation.

    2. Re:Already common knowledge among brewers by Just+Brew+It! · · Score: 1

      How do we know that what brewers have traditionally referred to as "flocculation" isn't a superset of this effect? The end result (yeast that settles out faster) is the same regardless of whether the cells tend to clump after floating free for a while, or stay stuck together after budding. Unless brewers have been specifically testing individual clusters of settled yeast cells to see whether they are genetically identical, there would be little or no discernible difference.

  41. Human trials by Anonymous Coward · · Score: 0

    Yeast is boring.
    When can we see human trials?

  42. Cart before the horse? by Dcnjoe60 · · Score: 1

    The origin of multicellular life, one of the most important developments in Earth's history, could have occurred with surprising speed, U.S. researchers have shown.

    The origin of multicellular life comes from unicellular life, which would be one of the most important developments in Earth's history. When they can create that in the lab, then let's talk.

  43. Re:Organized trolling campaign on Slashdot by Tsingi · · Score: 1

    That's not the problem. The problem is that moderators gave him +5 Informative and are now modding down the accused, even for legitimate posts.

    Even the legitimate posts? We'll have to be more careful and not mod the legitimate posts down. Sorry, sometimes it's hard to tell.

  44. Outside intervention? by Dcnjoe60 · · Score: 1

    From the article, they had to intervene and select the yeast cells that were cooperating with what they were trying to do. Unless they are proposing outside intervention by a deity or alien race, it seems that the process they used isn't representative of what would have occurred in nature.

    1. Re:Outside intervention? by nedlohs · · Score: 1

      No shit, sherlock.

      They aren't claiming the multicellular life evolved in 2 months way back when. In fact you've have to be a drooling moron to think they would.

      We could also study the effects of compund X on mice, by observing mice in nature for a few hundred years and seeing what happens to the ones that just happen to eat some of compound X. Or we could put some mice in cadges and feed them compound X and speed up the process a tad.

      The whole idea of "natural selection" is that something is doing the "selecting". It could be a prey-predator arms race, it could the environment (average temperatures dropped, etc), and so on.

      So rather than observing yeast for a hundreds of years and hoping that some random occurance would see something that favours "clumps" of cells over individual cells they speed up the process.

    2. Re:Outside intervention? by Dcnjoe60 · · Score: 1

      No shit, sherlock.

      They aren't claiming the multicellular life evolved in 2 months way back when. In fact you've have to be a drooling moron to think they would.

      We could also study the effects of compund X on mice, by observing mice in nature for a few hundred years and seeing what happens to the ones that just happen to eat some of compound X. Or we could put some mice in cadges and feed them compound X and speed up the process a tad.

      The whole idea of "natural selection" is that something is doing the "selecting". It could be a prey-predator arms race, it could the environment (average temperatures dropped, etc), and so on.

      So rather than observing yeast for a hundreds of years and hoping that some random occurance would see something that favours "clumps" of cells over individual cells they speed up the process.

      If the article is about the fact that yeast or other single celled organisms could clump together to form a multicell organism, what you say would be true. However, by adding the qualification that the process can occur in a relatively short time does bring into question "How?" For the researchers, they answered it by specifically selecting those organisms that had the best characteristics to clump. That is fine, too. But exactly how that equates to them clumping in nature in a relatively short time is a leap. There are far more random occurrences that could happen that would discourage clumping than encourage it.

      So, I still stand by my original point, that given the parameters setup by the researchers, such a conclusion requires an outside force of some sort. I do not dispute that it can occur naturally, just in a short time frame as proposed. (Not only do I not doubt it, but it is obvious that it did indeed occur).

    3. Re:Outside intervention? by nedlohs · · Score: 1

      They don't give a time frame so how can you claim they proposed one.

      """
      Although known transitions to complex multicellularity, with clearly differentiated cell types, occurred over millions of years (9, 33), we have shown that the first crucial steps in the transition from unicellularity to multicellularity can evolve remarkably quickly under appropriate selective conditions.
      """

      Doesn't say it did occur in a short time frame, just that apparently it can. And "remarkably quickly" when you are talking about millions of years doesn't mean "short time frame". All they seem to be saying is that there doesn't need to be a big increase in genome complexity to get the shift and hence it doesn't need lots of time if you happen to have selective pressure for it.

    4. Re:Outside intervention? by Dcnjoe60 · · Score: 1

      They don't give a time frame so how can you claim they proposed one.

      """
      Although known transitions to complex multicellularity, with clearly differentiated cell types, occurred over millions of years (9, 33), we have shown that the first crucial steps in the transition from unicellularity to multicellularity can evolve remarkably quickly under appropriate selective conditions.
      """

      Doesn't say it did occur in a short time frame, just that apparently it can. And "remarkably quickly" when you are talking about millions of years doesn't mean "short time frame". All they seem to be saying is that there doesn't need to be a big increase in genome complexity to get the shift and hence it doesn't need lots of time if you happen to have selective pressure for it.

      It is the last part of their statement (that you quote): "...can evolve remarkably quickly under appropriate selective conditions" that is the problem. It is misleading. There is no doubt it is true, but the "appropriate selective conditions" they used could never occur in nature, without the before mentioned deity or alien to do the selection process (as the researchers did).

      Don't misunderstand me, I am not arguing for the existence of a deity or alien, just that the techniques used cannot occur naturally, so the time frame referenced is meaningless. I have no doubt, however, that the process from single cell to multicell was much quicker than the process from the primordial goop to single cell was.

  45. Huh? by mbrod · · Score: 1

    So human beings picking the winners is evolution but God picking them is crazy talk?

    1. Re:Huh? by kenboldt · · Score: 0

      actually, if you could read you would have seen that GRAVITY, not human beings picked the winners. perhaps the number of digits in your /. UID represents how far you have evolved from yeast...

    2. Re:Huh? by mbrod · · Score: 1

      Keep reading noob: "By culturing only the cells that sank, they selected for those that stick together." They picked the ones on the bottom. Respect your elders.

  46. See, I told you... by Anonymous Coward · · Score: 0

    ...that Earth was only 6000 years old!

  47. Re:Organized trolling campaign on Slashdot by NeutronCowboy · · Score: 1, Funny

    On the upside, you are so busy posting about the moderation system that you aren't posting your usual anti-google drivel. I call that a win.

    --
    Those who can, do. Those who can't, sue.
  48. Life evolved... by _0xd0ad · · Score: 2

    From life. I'm not surprised.

    Life evolves. Dead things don't. And dead things don't evolve into life.

    Wake me up if that changes.

    1. Re:Life evolved... by serviscope_minor · · Score: 1

      Why the excessive negaivity? They are evolution researchers, not ambiogenesis researchers. And they've produced a piece of interesting and though provoking research.

      But seriously, if you're not interested in evolution rather ambiogenesis only, then why did you join an evolution thread just to share that fact with us?

      Life evolves. Dead things don't. And dead things don't evolve into life.

      Some things are very clearly dead (rocks). Others are very clearly alive (you).

      Others are not so clear, for instances viruses virusoids and viroids, but they nonetheless evolve.

      Also, quite clearly, at one point, otherise dead things must have become not dead otherwise we wouldn't be here to make that observation.

      --
      SJW n. One who posts facts.
    2. Re:Life evolved... by _0xd0ad · · Score: 1

      Why the excessive negaivity? They are evolution researchers, not ambiogenesis researchers. And they've produced a piece of interesting and though provoking research.

      The point was that these stories periodically break and it's always the same: you just read it a little and you'll find where they admit the sensationalist headline wasn't really true and they ended up with life because they started with life.

      If that's interesting and thought-provoking, they need to find a way to present it that isn't "here, we made life! (not really)". I'll be happy to be interested and have my thoughts provoked, but I don't like the unnecessary provocation of that headline.

      Also, quite clearly, at one point, otherise dead things must have become not dead otherwise we wouldn't be here to make that observation.

      Don't get me started on origins.

    3. Re:Life evolved... by serviscope_minor · · Score: 1

      The point was that these stories periodically break and it's always the same: you just read it a little and you'll find where they admit the sensationalist headline wasn't really true and they ended up with life because they started with life.

      I think you not only misread TFA and TFS but TFT (title) as well. The research is about the evolution of multicellular life from single cellular life, not the evolution of multicellular life from non-life.

      I think your disappointment comes from a confusion between evolution and ambiogenesis.

      Easy way to remember: Darwin's seminal work on evolution is called "On the origin of species" not "On the origin of life".

      --
      SJW n. One who posts facts.
    4. Re:Life evolved... by _0xd0ad · · Score: 1

      I think you not only misread TFA and TFS but TFT (title) as well. The research is about the evolution of multicellular life from single cellular life, not the evolution of multicellular life from non-life.

      Yeah, I misread it, because they wrote it that way on purpose so that people would misread it. It's written in the passive tense. For no good reason.

      I'm not going to go on some rant about active vs. passive tense, but I will say this: I'd have been perfectly happy with a headline where "yeast" is an active-tense object that they experimented with, rather than "life" as this passive-tense thing that's coming from left field.

    5. Re:Life evolved... by _0xd0ad · · Score: 1

      Actually, I will. This will be fun.

      If someone uses passive tense, they are hiding the source of the action. They may not realize it, but they're doing it, and they're doing it intentionally even if unknowingly. Here, watch:

      "I think your disappointment comes from a confusion between evolution and ambiogenesis."

      Passive tense. You're hiding the fact that you just said I've confused evolution and ambiogenesis. Did you see that? It sounds less confrontational when you put it in the passive tense, and that is why you did it. But you didn't really make it any less confrontational; you just made it sound less confrontational. You also turned it into an opinion so that I couldn't argue with it.

      Not like it's a big huge deal, but it's not a bad thing to stick back in the corner of your head somewhere and when you notice that you've just used passive tense, ask "why?", and if there's no good reason, don't.

    6. Re:Life evolved... by the+biologist · · Score: 1

      It is fairly common for science writing to be in the passive tense... "This was done..." rather than "I did this..." The intent is to place the emphasis on the work, rather than who did the work. Sometimes it gets out of hand and is really annoying...

      Yes, I actually am a biologist, a year away from completing my PhD on the subject.

    7. Re:Life evolved... by serviscope_minor · · Score: 1

      If someone uses passive tense, they are hiding the source of the action. They may not realize it, but they're doing it, and they're doing it intentionally even if unknowingly. Here, watch:

      No, not really.

      Passive tense. You're hiding the fact that you just said I've confused evolution and ambiogenesis. Did you see that?

      Wow. It was so well hidden that you spotted it straight away.

      It sounds less confrontational when you put it in the passive tense, and that is why you did it.

      Quite possibly. I wasn't thinking it through that thoroughly.

      But you didn't really make it any less confrontational; you just made it sound less confrontational.

      Ultimately you are simply mistaken about what evolution is. There are many ways of putting it from confrontational to passive. You are right that is doesn't change the facts. Often, people try to be less confrontational because being excessively confrontational comes cross as being a jerk.

      You also turned it into an opinion so that I couldn't argue with it.

      And that is also wrong on so many levels. Either way, I was making a statement of fact (or what I believe the facts to be). Go check the definitions if you care, but me using the passive tense makes it no more or less of an opinion than is I stated it baldly.

      I agree with your general avoidance of the passivce tense. I disagree that the passive tense hides anything. I was also essentially implying (correctly) that your misunderstanding is part of a much larger shared misunderstanding which many people have. The passive tense is quite good at that.

      --
      SJW n. One who posts facts.
    8. Re:Life evolved... by _0xd0ad · · Score: 1

      Perhaps, rather than saying it hides something, I could simply say that it diverts something. Any time you see passive tense used (by whom?)... there you go. That was passive tense, and it diverted the "whom" into a side discussion and kept it out of the main thought. Sometimes the "whom" is important, and should be kept in the main body of the sentence so the reader or listener doesn't have to go looking for it.

      I was making a statement of fact (or what I believe the facts to be).

      Exactly. The two are so obviously connected that saying "I think" is almost always unnecessary. Unless you're being graded by word count, why do it?

      I was also essentially implying (correctly) that your misunderstanding is part of a much larger shared misunderstanding which many people have.

      And that is why I pretended to be misled. I do know what evolution is, and I knew what the headline meant, but it was sensationalized more than I liked, so my reaction to the headline was essentially "big deal" when in fact I'm sure their research was interesting. Note that plenty of other people have essentially responded with similar dismissive comments. That's primarily because the headline itself seemed more sensational than the actual explanation of it.

      The passive tense is quite good at that.

      At misleading people? Sure, just another reason to avoid it when it's unnecessary.

  49. Re:STFU /.ers by _0xd0ad · · Score: 1

    It might be snowing piss off, but the neighborhood's dogs will piss on soon enough. Go outside. And don't eat the yellow snow.

  50. Yes but by Brainman+Khan · · Score: 1

    Will our new clumpy yeasty overlords still make beer for us?

  51. Re:the way I see it... by _0xd0ad · · Score: 1

    And also: why no distributed brain nodes? I mean, decentralized processing works for some other species (lobsters) so why not us?

    FYI, you have that. It's called reflexes. And you're completely and totally unaware of them, which "Just Works" and also isn't that great of a design for a highly intelligent organism to incorporate too much of, which is why you don't.

  52. Re:Organized trolling campaign on Slashdot by GrumpySteen · · Score: 1

    I'm fairly sure nobody is accusing anyone of being a shill for the yeast industry, so it's kinda pointless to post this under a story about forced evolution in yeast cells.

  53. Re:Yeasty "evolution" by omnichad · · Score: 1

    The elephant in the room is that they selected from a sample that possibly contained multiple genetic variations already. They just bred the ones that already exhibited the trait they were looking for. Why does that mean mutation or evolution.

  54. Not so impressive... by PhaedrusTheGreek · · Score: 1

    That's one thing, but now I want to see an amino acid evolve into a cell !

  55. Really? EVOLVED in 60 days? by mbeckman · · Score: 1

    This looks like a complete abdication of the dictionary definition of biological evolution, which requires genetic changes as a result of random mutations. According to the paper, Radcliff "observed the rapid evolution of clustering genotypes" -- existing genotypes, not new ones. No discussion of a mutating agent, just direct environmental manipulation. That's not evolution. In anyone's book.

    1. Re:Really? EVOLVED in 60 days? by the+biologist · · Score: 1

      Actually, this is exactly the dictionary biological definition of evolution. Random mutations are always happening in any yeast culture and their selection forces genetic changes in the resulting population. The term, 'clustering genotypes' does not in any way refer to genotypes existing before the experiment. As they will have started the experiment with a single cell, (standard yeast research practice which was not mentioned in the paper because they couldn't imagine anyone ever thinking they would do otherwise), there was no pre-existing clustering genotypes.The mutating agent in this case is the biology of the organism and is not the subject under examination, so of course they didn't discuss it.

      Yes, I actually am a biologist, a year away from completing my PhD on the subject.

  56. Re:Yeasty "evolution" by the+biologist · · Score: 1

    This elephant doesn't exist. Yeast researchers routinely streak out the cells on plate media. This process dilutes the cells until you can be sure of getting a few individual cells per square inch. Each single cell then grow up to form a visible colony, which is then used experimentally. In that one colony there is genetic diversity, but it did not exist from before the single cell was isolated.

    Yes, I actually am a biologist, a year away from completing my PhD on the subject.

  57. Re:so dna mutation over generation is not enough f by kurzweilfreak · · Score: 1

    You want as simplistic an experiment as possible. The simpler the experiment, the easier it is to rule out variables other than what you're testing for. IOW - good science.

    --

    kurzweil_freak

    5th Kyu Genbukan Ninpo/KJJR student

    Be the darkness that allows the light to shine.

  58. Re:Organized trolling campaign on Slashdot by psiclops · · Score: 1

    I dont know how many times he needs to tell you that he's not just believeing some random list.

    I'm assuming it's something that you'll just never understand.

    --
    i spent five minutes thinking and all i got was this crappy sig
  59. Everbody on slashdot. by Anonymous Coward · · Score: 0

    Is more of an expert than the experts in every article ever posted to Slashdot.
    Once again.

  60. Show me evolution of DNA by BlueCoder · · Score: 1

    We all know what is possibe with DNA/RNA. Show how it evolved from nothing in the laboratory.

    The evolution to DNA is what is more interesting. What was before?

  61. Re:so dna mutation over generation is not enough f by tibit · · Score: 1

    You're right, but only to a point. What I meant by "simlistic" was really idealized: they ignored too many known facts so the experiment is simple but pointless: it cannot provide any decent conclusions.

    --
    A successful API design takes a mixture of software design and pedagogy.
  62. and you have spent how many millions by Anonymous Coward · · Score: 0

    learning something that anyone who bakes bread or brews beer already knows?