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Researchers May Have Discovered How Memories Are Encoded In the Brain

Zothecula writes "While it's generally accepted that memories are stored somewhere, somehow in our brains, the exact process has never been entirely understood. Strengthened synaptic connections between neurons definitely have something to do with it, although the synaptic membranes involved are constantly degrading and being replaced – this seems to be somewhat at odds with the fact that some memories can last for a person's lifetime. Now, a team of scientists believe that they may have figured out what's going on. Their findings could have huge implications for the treatment of diseases such as Alzheimer's."

38 of 185 comments (clear)

  1. They are etched by Jeremiah+Cornelius · · Score: 4, Funny

    by tiny Gnomes, with silver hammers.

    This is known, even by the most obtuse of my Aunts.

    --
    "Flyin' in just a sweet place,
    Never been known to fail..."
    1. Re:They are etched by sexconker · · Score: 2

      by tiny Gnomes, with silver hammers.

      This is known, even by the most obtuse of my Aunts.

      It is known, Khaleesi.

  2. religious implications? by Anonymous Coward · · Score: 3, Funny

    If memories are stored in meat...how come we still have them in the afterlife?

    1. Re:religious implications? by Quartus486 · · Score: 5, Interesting

      Can't answer for other religions, but this is what the Bible says:

      Ecclesiastes 9 (New International Version)

        5 For the living know that they will die,
            but the dead know nothing;
      they have no further reward,
            and even their name is forgotten.

      10 Whatever your hand finds to do,
      do it with all your might, for in the realm
      of the dead, where you are going,
      there is neither working nor planning
      nor knowledge nor wisdom.

    2. Re:religious implications? by gestalt_n_pepper · · Score: 4, Funny

      Well, isn't that a cheery little missive? Tell me again what the appeal of this religion is? Is it the central zombie figure? The ritual cannibalism? The dramatic "death from above" episodes?

      --
      Please do not read this sig. Thank you.
    3. Re:religious implications? by kanweg · · Score: 4, Funny

      Yes, here you can read up on that.
      http://www.jhuger.com/kisshank.php

      Bert

    4. Re:religious implications? by TheCarp · · Score: 2

      I thought the upside was in not having to admit that your parents abused you by giving you an obviously fabricated and useless model for how the world works. At least, thats what I assumed other people must see in it.

      --
      "I opened my eyes, and everything went dark again"
    5. Re:religious implications? by asher09 · · Score: 4, Interesting

      Throughout the OT & NT, "the realm (place/assembly) of the dead" always refers to the place where the condemned will end up and not the saints (those who are justified by faith in God). The place that the saints end up with is referred to as heaven / the land of the living / the dwelling place of the Most High / Paradise / New Jerusalem, etc, but not "the realm of the dead".
      Moreover, Ecclesiastes was written by Solomon when he was "backsliding" (ie falling away from the faith). So he was being cynical about life and not hopeful about future with God. It's easy to take verses out of context and come up with non-Christian ideas from the book of Ecclesiastes for this reason.

      --
      Some were yelling one thing, some another. Most of them had no idea what was going on or why they were there. Acts19:32
    6. Re:religious implications? by Charliemopps · · Score: 2

      Well, assuming you mean the christian afterlife, you die... and are very really dead, just as atheists believe. The afterlife awaits the rapture, when God will raise the dead to sit with him in heaven. So technically, you'd take your resurrected body and its memories with you into heaven.

    7. Re:religious implications? by gottabeme · · Score: 2

      Hey Don,

      Here's a response, but I'll try to restrain my knee.

      First, let me briefly address the presupposition that the Catholic church is supposed to be the ultimate in Christian leadership. It's so sad that the Catholic church has tainted the name of Christianity throughout history. I hope you can look past their misdeeds. In the same way that not all Muslims are in favor of murdering non-Muslims, not all Christians in agreement with the Catholic church. In fact, the Catholic church has abused Scripture to create and perpetuate its own power. The Bible does not teach Catholicism or the hierarchy of the Catholic church. In other words, Catholicism != Christianity, and Christianity != Catholicism.

      Second, you raise some insightful questions about the biblical text, oral transmission, and scribal manipulation. However, you don't seem to be aware of some of the answers to these questions. The fact is that the New Testament is the most widely-attested ancient document in existence. There are more manuscript fragments than any other ancient document--over 5,000. Many people have devoted years to the study of them, and the evidence shows that we can reconstruct about 95% of the NT with certainty--and the parts of which we can't be as certain are not doctrinally relevant. So we can be quite sure that we have what the NT authors originally wrote.

      Regarding oral transmission, oral and form criticism is by nature limited to presuppositions that cannot be proven. While it can be useful, it cannot be conclusive, and cannot be used to disprove anything. Sadly, many people do just this. For example, the Jesus Seminar based its conclusions on it--but their final methodology was to sit down and vote with colored beads, based only upon each member's personal opinion--and of course, the members were chosen by the project's organizers. The entire project was flawed and a farce--but if you leave out the flaws, it sounds like a convincing argument against the Bible's authenticity. People like Bart Ehrmann mislead people in this way all the time.

      It's good that you believe in God . I can tell that you're quite angry with him. Fair enough. Life on this earth stinks a lot of the time. We don't have all the answers to why things are the way they are, why things happen, etc. You're right: it's your life, and you can do what you want, and you can suffer the consequences, both here and in eternity. But it would be very sad if you went your whole life here misunderstanding who God is because of people who have twisted Scripture for their own gain. I don't think God created us as entertainment for himself. If he did, he must be sorely disappointed, because he doesn't enjoy watching the horrible things that people do every day. He has emotions and feelings just like we do--after all, he created us in his image. Instead of entertainment, what if God wanted people to love, and to love him? The thing about love is, it can't be forced. (And I don't just mean romantic love--I mean the kind of love exemplified in Christ laying down his life.) If love isn't a choice of free will, it's not love. And if a choice must be made, there must be an alternative to choose. Of course, the alternative to goodness and love is evil.

      If the presupposition is that God doesn't mind or enjoys watching evil, bad things, then it's natural to conclude that he doesn't exist or that he's no better than anyone on this earth, and therefore not worth following or listening to. But there are alternatives to that presupposition. I encourage you to think outside the box that the atheistic society today hands you. Examine all the evidence for yourself--from all the different angles, Christian and non-Christian--and come to your own conclusions.

      --
      "Those who consume the bulk of goods are those who make them. We must never forget this secret of our prosperity."
    8. Re:religious implications? by gottabeme · · Score: 2

      Well, let's be clear up front: the Bible is certainly a piece of history, whether one believes it's inspired or not. The two issues are not the same.

      I'd like to draw your attention to a serious issue that many people today take for granted. Notice that you referred to a novel. It is a fundamental mistake to apply contemporary literary genres to ancient texts like the Bible. The biblical writers had no concept of novels, or of modern historiography. Their idea of recording and reporting history was very different than ours today. When we judge their work by our rules, by our methods, we fail to understand the authors' purpose, and we miss their point entirely. As a brief example, it's a fundamental error to try to interpret Genesis in a scientific manner, because the writers of Genesis had no concept of science. It was not their purpose to record a scientific account of Creation, nor to provide an account in line with modern historical methods. If we try to force the text into such a mold, we utterly fail to understand the text's real meaning. As an analogy, it would be like judging a work of historical fiction by the standards of serious historical writing and research. The former is meant primarily to entertain, but the latter is meant to record and inform in (hopefully) an impartial manner. If we judge a movie set in the past by how accurate it is to the last detail, we miss the point of the movie entirely.

      Finally, the question of genre is often neglected entirely. There are several different genres in the OT, such as narrative, history, poetry, wisdom, prophecy, and law. It's not about jettisoning parts of the OT--it's about interpreting them accurately and understanding how they fit into the overall message of the Bible. The fact that Ecclesiastes doesn't anticipate the coming of Christ and the revelations about eternal life doesn't undermine itself or Christianity. It simply calls for a proper understanding of the text's purpose and meaning.

      --
      "Those who consume the bulk of goods are those who make them. We must never forget this secret of our prosperity."
    9. Re:religious implications? by geminidomino · · Score: 2

      You make a great many assertions about a being which, by your own arguments, is unknowable. How, exactly, is that? How do you know it's "above" any concept, or that its motives were NOT to be entertained by the suffering of all life, like a child with a magnifying glass and access to an anthill? After all, if it is, indeed, all-powerful, all-knowing, and perfect, then obviously everything that has been created is exactly to spec. And that makes any sentient mind ostensibly behind said creation downright sociopathic.

      One look around the universe provides ample support for that accusation. An omnipotent and omniscient being creates a universe where everything from atoms to stars all fall prey to entropy and die, creates creatures that exist only to destroy themselves in the most brutal ways possible, and occasionally lets the odd ELE wipe everything out for the lulz.

  3. They solved it by Anonymous Coward · · Score: 4, Funny

    but then they slept on it and forgot

  4. Capacity by darkob · · Score: 2

    If the tiniest amount of storage is on molecular level, the total capacity of "memory" of a person is HUGE.

    1. Re:Capacity by Baloroth · · Score: 2

      I think the estimates are somewhere are in the petabytes in magnitude (best exact figure I can find is 2.5 petabytes, in Scientific America a few years ago). So yes, quite a lot. But as the summary says, the process isn't fully understood.

      --
      "None can love freedom heartily, but good men; the rest love not freedom, but license." --John Milton
  5. A memory doesn't have to stay at the same place by Hentes · · Score: 2

    A memory can theoretically remain longer than synaptic connections. If a memory is important enough you memorize it again when you remember it, and store it in a different location. Doing this from time to time can help bypass the duration limit.

  6. first application will be .... by RichMan · · Score: 5, Insightful

    Pick one
    a) therapy, erasing bad memories
    b) therapy, implanting good memories
    c) health, perserving function
    d) personal, perserving cherished memories
    e) learning
    f) porn

    Place your bets!!

    1. Re:first application will be .... by EdZ · · Score: 2

      "Your original memory will never by fully restored, there might be residual simulation; we don't have the technology yet to handle simex erasures. I'm sorry."

  7. Re:Fuck GizMag by PatPending · · Score: 5, Informative

    If you want to read something intelligent about "memory storage theory", here's a better article--from Brown University, November 14, 2006.

    Pull-quote:

    PROVIDENCE, R.I. -- Daily events are minted into memories in the hippocampus, one of the oldest parts of the brain. For long-term storage, scientists believe that memories move to the neocortex, or "new bark," the gray matter covering the hippocampus. This transfer process occurs during sleep, especially during deep, dreamless sleep.

    --
    What one fool can do, another can. (Ancient Simian Proverb)
  8. My mind is blown by DaleGlass · · Score: 5, Interesting

    I took a look at the paper in case I managed to understand something, and came across this:

    Information Storage Capacity

    If each extended kinase can either phosphorylate at the S-T site on a tubulin substrate, or not, the process effectively conveys one bit of information (e.g. no phosphorylation = 0, phosphorylation = 1). Each set of six extended kinases on either side of a CaMKII holoenzyme can thus act collectively as 6 bits of information. Ordered arrays of bits are termed âbytesâ(TM).
    [...]

    Logic Gates

    Clusters of phosphorylated tubulin, and/or MAP attachment may serve as logic gates for propagating information. Figures 9 and 10 demonstrate two types of Boolean logic gates, an AND gate and an exclusive OR gate (XOR) in which MAPs convey inputs, with output along tubulin pathways. Figures 11 and 12 show AND and XOR gates in which MAPs convey output of inputs and processes in tubulins within the MT. The combination of XOR and AND logic gates forms a universal set for computation in which all other logic gates (NOT, OR etc.) can be conceived. Signals propagating through MT-MAP logic circuits may extend throughout cytoskeletal networks, regulating synaptic function, cognition and behavior.

    Whoa. If that research is correct then that's really amazing.

    1. Re:My mind is blown by sunwolf · · Score: 2
      This reddit comment seems to debunk the foundations of the paper. TL;DR copied below:

      TL;DR The experiment has nothing to do with memory as most neuroscientists and psychologists understand it. However, it's much easier to make unsupported statements in a press release than in the peer-review process. The author of the article fell for the press release of a lab known for making outrageous statements.

  9. Get your ass to Mars. by Rodness · · Score: 3, Funny

    How much will it cost me to remember being an invincible secret agent on Mars??

  10. Cloud Storage by InfiniteZero · · Score: 4, Funny

    Well, the religious types will tell you there is also a backup copy stored somewhere, somehow in the cloud, literally.

  11. Re:Fuck GizMag by h5inz · · Score: 2

    Although I don't know that much about the biochemistry that the Gizmag is talking about, and I can't criticize that, the sentence that contains "memories are stored somewhere, somehow in our brains but the exact process has never been entirely understood." is suspicious - almost as if the author has actually no interest in what so ever in the subject. You are right, we do know approximately where the memories are stored. These neocortex parts+hippocampuses are called temporal lobes, left for abstract information, and right for spatial, contextual and events information and it has been established for quite a long time that they are specialized in long term memory.
    "..in the 1930s whe Wilder Penfield observed that his concious epileptic patients would occasionally report "flashbacks" while the superior or upper lateral surfaces of their temporal cortices were electrically stimulated."- Origins of Neuroscience: A History of Explorations Into Brain Function By Stanley Finger
    http://en.wikipedia.org/wiki/Temporal_lobe

  12. Important work, but clearly being oversold by neurophil12 · · Score: 5, Informative

    "Now, a team of scientists believe that they may have figured out what's going on. Their findings could have huge implications for the treatment of diseases such as Alzheimer's."

    This statement is utterly absurd, but the authors of the PLoS article appear to have done some important work here. I'm not a physicist and can't evaluate the quality of the modeling and measurement, but assuming that is all legitimate (and I have no reason to doubt it), then their findings could prove useful to furthering theories on memory formation and stability. Basically they found a series of potential mechanisms by which activated CAMKII (via synaptic activity) can interface with microtubules to update their phosphorylation states. In what I would consider heavy speculation, they suggest that these phosphorylation states, along with the structural and electrostatic properties of microtubules, can produce and modulate information processing along/within the microtubules.

    Keeping Occam's Razor in mind, to me it would be simpler if these interactions simply increase or decrease microtubule stability, and possibly affect shape to promote dendritic bifurcation versus elongation or retraction. Not to say some kind of information processing can't be happening in the microtubules, but we already have some pretty good theories regarding information processing in dendrites based on membrane voltage propagation. With changes in microtubule phosphorylation state there is also the possibility of making cross-linking tighter or looser, making it possible to fit in more or fewer microtubules and change a dendrite's diameter. All of these changes are important for signal processing, but by impacting the propagation properties of the membrane rather than through the microtubules directly. I base these comments on other research that have found changes in dendrite morphology and physiology concurrent with synaptic plasticity. One must always keep in mind though that anything as complex as memory is going to rely on multiple mechanisms. Any claim that "the mechanism for X" has been found is always hyperbole.

    I would say that some of that speculation, as well as the fact that this is all highly theoretical (no experimental work) are the major reasons this wasn't published in a journal like Nature or Science. Still PLoS Computational Biology often has some very good and important articles.

    1. Re:Important work, but clearly being oversold by ColdWetDog · · Score: 2

      Tubulin is a major structural protein, so manipulating it may allow you to create 'memory structures' whatever they may be. However, my reading of TFA is that it's the logic information held by the kinase by way of the degrees of phosphorylation on the molecule that actually encodes the data.

      As you say, very speculative but interesting. I'm sure there are experimental systems with mutations in both the kinase and tubulins - that should offer some experimental avenues to look into this.

      --
      Faster! Faster! Faster would be better!
  13. Re:Fuck GizMag by Ihmhi · · Score: 4, Funny

    Wait, so the human body does nightly backups? That is awesome.

  14. forget alzheimers treatments by um...+Lucas · · Score: 2

    this brings us many steps closer to Total Recall!

    Two weeks... two weeks... two weeks.... two weeks...

  15. Better article by Derek+Pomery · · Score: 4, Informative
    --
    -- perl -e'print pack"H*","6e656d6f406d38792e6f7267"' /. ate my old sig. Bastards.
  16. Bad Title by SoftwareArtist · · Score: 5, Informative

    What they've actually proposed is a mechanism for how memories are stored, not how they're encoded. The question is, how can memories be so stable if they're made up of synaptic connections that are constantly changing? These authors have proposed an answer, a molecular description of a much more stable link between two neurons that could form and then remain fixed for years. If they're right, it's a very important advance. But encoding is a completely different question: how does a particular memory get represented as a set of those connections. This work says nothing about that.

    To give an analogy, they've described the magnetic domains on a hard disk. They haven't described how JPEG transforms images into patterns of bits.

    --
    "I'm too busy to research this and form an educated opinion, but I do have time to tell everyone my uninformed opinion."
  17. Re:Fuck GizMag by Centurix · · Score: 4, Funny

    It uses crantab

    --
    Task Mangler
  18. Memory is binary coded? by TheSync · · Score: 2

    From the actual scientific article:
    In long-term potentiation (LTP), a cellular and molecular model for memory, post-synaptic calcium ion (Ca2+) flux activates the hexagonal Ca2+-calmodulin dependent kinase II (CaMKII), a dodacameric holoenzyme containing 2 hexagonal sets of 6 kinase domains. Each kinase domain can either phosphorylate substrate proteins, or not (i.e. encoding one bit). Thus each set of extended CaMKII kinases can potentially encode synaptic Ca2+ information via phosphorylation as ordered arrays of binary "bits"...
    ...this suggests sets of six CaMKII kinase domains phosphorylate hexagonal MT lattice neighborhoods collectively, e.g. conveying synaptic information as ordered arrays of six "bits", and thus "bytes", with 64 to 5,281 possible bit states per CaMKII-MT byte...

  19. Re:Fuck GizMag by stevelinton · · Score: 2

    The research in question is about the exact process on a molecular level. We may know which cells
    or synapses are affected, but we don't know much if anything about the chemistry of that process. These
    simulation studies suggest an intriguing possibility

  20. The brain does not store memories by JRHelgeson · · Score: 4, Funny

    The Spirit that inhabits your body, that is the recording medium. When you die, you take all those memories and everything you've learned with you. It's really quite simple. The spirit is the recording medium, and the the human brain is the spiritual to physical interface adapter.

    Essentially, those neurons are nothing more than your hard drive cable. The scientists can see the data traveling down the cable, then they can see the data traveling back, then they wonder... 'hmm, how on EARTH does this cable store so much data?' It would all be so much easier to understand if they would just acknowledge the existence of a hard drive.

    --
    Good security is based upon reality and common sense. Common sense is a function of having common knowledge.
    1. Re:The brain does not store memories by Anonymous Coward · · Score: 3, Insightful

      This is an interesting conjectgure, but fallacious. There are probably between 80 and 120 billion bit-neurons in the human brain, and a finitely non-discrete number of synapses, all of which act as de facto logic gates/memory bits. Since the brain is constantly purging anything it finds irrelevant, and since it has mechanisms for reconstructing meaningful memories from very limited data, there's no reason to assume that this massive memory-loaded processor has to have some (essentially) off-site location for actually long-term storing this data. The fallacy is that you're assuming that this transient storage is A) unacceptable for long-term storage and B) that the transmission and processing of this data is somehow analogous to a hard drive cable, which itself is neither capable of storing nor processing data. The closest analogy would be to a processor that has gigabytes of onboard memory with built-in disposal and propagation mechanisms, neither of which are present in any current processor. Assuming something far-fetched and backing it up with less-than-robust analogies is, at best, a very weak way to argue well, much less actually be right.

    2. Re:The brain does not store memories by swell · · Score: 3, Funny

      Billions of neurons and trillions of synaptic connectors can not explain the miracle of memory, learning or inspiration. The higher function of the brain is to connect us with the infinite found in another dimension. There it connects with a storehouse of information and wisdom partly shared with others.

      Given sufficient energy, the brain accesses this storehouse more or less efficiently and produces results that lead to intelligence and success in navigating what we perceive as the world around us.

      It would be premature at this time to introduce the idea that this storehouse is shared with brains on other worlds, but it's worth considering for those with hyper connectivity.

      --
      ...omphaloskepsis often...
  21. Re:Where's PharmaKom when you need 'em? by semi-extrinsic · · Score: 2

    (Note: assuming that you are defending capitalism; not expressly stated in your post, but implied.)
    I find it funny how people defending capitalism have had to fall back on the same argument as used in favor of communism - "True x-ism has never existed, so you can't say it has failed".

    --
    for i in `facebook friends "=bday" 2>/dev/null | cut -d " " -f 3-`; do facebook wallpost $i "Happy birthday!"; done
  22. Re:Fuck GizMag by La+Gris · · Score: 4, Interesting

    The memorization job during night is more like a reprocessing of the short term pattern matching, or optimization.

    Let imagine you saw a calico cat during the day:
    Your short term memory barely stored the information patterns nearly as :
    1 - Surrounding environment (time, location, current occupation)
    2 - Encounter with a wandering animal.
    3 - The known cat of your neighbor.
    4 - An uncommon variety calico.

    During the night you reprocess optimize/compress the following pattern information as:
    1 - related and share the same pattern memory as: your usual work commute
    2 - related and share common animal encounters,
    3 - share the already memorized recognition pattern of your neighbor's cat.
    4 - share your already memorized recognition pattern of calico cats.

    If you sleep/dream good enough, your brain will iterate and further optimize/reduce these patterns by walking across which materialize as dreams.

    Your awake activity will bring new data as patterns that will help optimize and compress older memory patterns. In the long run, it may even produce lighter or more optimized memory, merging each duplicate information with "related to". Commonly used relations will wire faster actual synaptic links.

     

    --
    Léa Gris