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'Treasure Trove' In Oceans May Bring Revolutions In Medicine and Industry

dryriver sends this excerpt from the Guardian: "Scientists have pinpointed a new treasure trove in our oceans: micro-organisms that contain millions of previously unknown genes and thousands of new families of proteins. These tiny marine wonders offer a chance to exploit a vast pool of material that could be used to create innovative medicines, industrial solvents, chemical treatments and other processes, scientists say. Researchers have already created new enzymes for treating sewage and chemicals for making soaps from material they have found in ocean organisms. 'The potential for marine biotechnology is almost infinite,' says Curtis Suttle, professor of earth, ocean and atmospheric sciences at the University of British Columbia. 'It has become clear that most of the biological and genetic diversity on Earth is – by far – tied up in marine ecosystems, and in particular in their microbial components. By weight, more than 95% of all living organisms found in the oceans are microbial. This is an incredible resource.'"

39 of 107 comments (clear)

  1. Death by Anonymous Coward · · Score: 2, Insightful

    We'll wipe out all ocean life before we can fully reap the benefits.

    1. Re:Death by Anonymous Coward · · Score: 2, Informative

      We'll wipe out all planet life before we can fully reap the benefits.

    2. Re:Death by Genda · · Score: 4, Insightful

      Sorry guys, but you need to park that expanded self opinion someplace. Life on the planet is just fine. Hell, after the big asteroid hit, the earth was blasted, smothered, roasted, frozen, and left in the dark for month or years. Ten million years later an the diversity was extraordinary. We're the endangered species, and yeah we'll take out a slew of vertebrates with us.

    3. Re:Death by K.+S.+Kyosuke · · Score: 2, Funny

      Hell, after the big asteroid hit, the earth was blasted, smothered, roasted, frozen, and left in the dark for month or years.

      Asteroid? Asteroid? You Late Cretaceous sissies, you young whippersnappers, if you had any idea what happened to us in the Permian, you'd shut up and look away in embarrassment. You have no idea what killed us. Heck, we don't even have an idea what killed us!

      Sincerely yours, Gorgonops from south-western Pangaea.

      --
      Ezekiel 23:20
    4. Re:Death by Yobgod+Ababua · · Score: 2

      HAhahahahahahahahahahhahahaah....

      Ow, my sides.

  2. Re:Industry? by Sperbels · · Score: 2

    Why would anyone seek treatment for a non-fatal disease when doing so puts you in debt for decades.

  3. Re:Industry? by haruchai · · Score: 4, Insightful

    Because you can patent it, sell it and use the profits to buy off, er, make generous campaign contributions.

    --
    Pain is merely failure leaving the body
  4. Almost infinite? by jomegat · · Score: 4, Funny

    What does "almost infinite" even mean?

    --

    In theory, practice and theory are the same. In practice, they're not.

    1. Re:Almost infinite? by lessthan · · Score: 4, Funny

      Almost infinite means nearly limitless. Does that help?

      --
      Space Shuttle was a program that strapped humans to an explosion and tried to stab through the sky with fire and math
    2. Re:Almost infinite? by JWSmythe · · Score: 5, Interesting

          It means that we'll farm it to the edge of extinction, and then ponder what happened to them all... Kinda like...

      Hunting whales for blubber, and then wondering why there whales are almost extinct.

      Using pesticide on virtually everything, and then wondering why bees are dying off.

      Farming marginally arid land, and being surprised by the result.

      I'm not an environmentalist wingnut. Sometimes the answer to "what could possibly go wrong" is really obvious.

      --
      Serious? Seriousness is well above my pay grade.
    3. Re:Almost infinite? by fm6 · · Score: 4, Informative

      I thoroughly agree with the point you're trying to make. But note that pesticides are not that strongly implicated in Colony Collapse Disorder. The problem is unknown in Australia, where pesticides are just as heavily used as anywhere else. It is extremely likely that it's due to some kind of environmental stress, which fits in with your abuse-of-resources theme.

    4. Re:Almost infinite? by jamesh · · Score: 3, Insightful

      What does "almost infinite" even mean?

      Kind of like infinity, but just a little bit less.

      I've been doing a bit of work with pacemaker clusters lately, and infinity there is defined to be 1000000, so I guess "almost infinite" is around 999998.

      More likely, "almost infinite" means that obviously they know it's not actually infinite, but there are more than they'll ever get to analyse in their lifetimes so the difference doesn't have any meaning.

    5. Re:Almost infinite? by dbIII · · Score: 3, Interesting

      The problem is unknown in Australia, where pesticides are just as heavily used as anywhere else

      Pesticides have been expensive in Australia due to few suppliers having close to a monopoly so they might be used less than some other places, plus there were some deaths from overexposure decades ago that got a lot of press and seem to have had farm workers take care with concentrations ever since. There is also a lot of uncleared land so pesticide use may be in "islands" surrounded by the whole instead of the other way around in as in other places more intensively farmed.

      Also, what would be called "organic" in some places is the norm for some things in Australia since the plant that comes from overseas may not have a local pest. For some things, a physical barrier (tunnel houses or bags around bananas) does the job without pesticides but that is relatively recent and may be part of chasing after an "organic" label and not widespread.

      However there are some places in Australia where pesticides have been used a lot but there are still plenty of bees, so even if pesticides are used less on average in Australia than other places it still doesn't tell us anything about the bees.

    6. Re:Almost infinite? by siddesu · · Score: 3, Insightful

      In slightly more general numeric terms, finite is much below 9000, almost infinite is the interval from there up to and including 9000, and everything over 9000 is infinite.

    7. Re:Almost infinite? by Arancaytar · · Score: 3, Funny

      pacemaker clusters

      Who needs more than one pacemaker? I mean, unless you're from Gallifrey or something.

      (...Yes, yes, I was just making a funny.)

    8. Re:Almost infinite? by Livius · · Score: 3, Funny

      Of course, what they're trying to say is "this resource is so big we can't imagine ever using it up." Which, of course, says little about their imagination.

      Actually, it says everything about their imagination. Or rather, lack thereof.

    9. Re:Almost infinite? by fm6 · · Score: 2

      One theory I've heard is that the huge demand for pollination services in most countries has kept beekeeper moving their hives around all the time, often transporting them thousands of miles at a time. This stresses the colonies and makes them susceptible to a variety of ailments. This practice is supposed to be much less prevalent in Oz. This is consistent with the fact that there's no obvious link between CCD and any single external factor.

      None of which should be construed as a defense of indiscriminate use of pesticides. That most definitely does cause all kind of problems. CCD just doesn't happen to be one of them.

    10. Re:Almost infinite? by epine · · Score: 2

      "Almost infinite" could serve as meaning creating new varieties faster than we can detect and sequence the little bastards, for a pessimistic extension of Moore's law.

      Here's a second good candidate for "almost infinite":

      The latest research shows that even the most powerful future experiments (like SKA, Planck) will not be able to distinguish between flat, open and closed universe if the true value of cosmological curvature parameter is smaller than 10^-4.

      Q: How big is the universe?
      A: Physicists believe the universe is infinite, almost.

    11. Re:Almost infinite? by tbird81 · · Score: 2

      It was a beowulf cluster of pacemakers. Can you imagine the power of this?

    12. Re:Almost infinite? by fm6 · · Score: 2

      So fine, in the context of cosmological curvature, "almost infinite" makes sense. In the context of natural resources, "almost infinite" means "I'll be dead by the time it's used up."

  5. Hooray! Let's patent the SHIT out of the oceans! by Qubit · · Score: 3, Insightful

    Sorry, was I being too cynical there?

    But actually, is someone going to try to patent the shit (read: actual shit) that comes out of the oceans? Because I think that they really might try...

    --

    coding is life /* the rest is */
  6. Not allowed! by cvtan · · Score: 5, Funny

    Too bad PETA will not allow us to exploit bacteria in this cruel manner. You have to ask their permission first. Individually.

    --
    Sorry, but gray text on gray background is making my eyes bleed.
    1. Re:Not allowed! by dasunt · · Score: 3, Insightful

      Anyway, vegan since 15+ years and lacto-ovo-vegetarian since about 25 year here but European and I think Peta is lame and have never understood this nudity crap.

      Vegan, American, and still think PETA is lame.

      To put it in perspective for non-vegs, think of the most inane, zealous type of individual who supports the same political views as you do. The sort of individual who does more damage to your beliefs than the most ardent opponent. That's PETA in a nutshell.

  7. Re:Industry? by Anonymous Coward · · Score: 5, Insightful

    You are entirely right! Industry prefers to have the government research it and then take the credit and profits for the research. Just like industry prefers to have small businesses take the risks and then steal the business and profit from them.

  8. Re:Industry? by r1348 · · Score: 3, Insightful

    Yes! Just like the Internet! Down with the government!

  9. Great! by fm6 · · Score: 4, Insightful

    We've used up all the fish. Now we can work on the smaller stuff!

    1. Re:Great! by Genda · · Score: 5, Funny

      Its krill or be krilled

  10. Yah, really? by TexVex · · Score: 4, Insightful

    I'm old enough to remember when the Rain Forest was the "treasure trove" of new medicines.

    Even then, the documentarians had the wit to point out that the main goal of researching all those new wonderful plant cures would be to figure out how they could create synthetic versions of nature's miracles and patent them.

    So, you know what? I don't give a shit. If somebody finds something revolutionary and decides to share it with humanity, then by all means please slap me around some and make sure I am aware of it. Because not even the invention of aspirin (developed from old common knowledge about the medicinal properties of willow bark) went without patent-related controversy.

    --
    Fun with Anagarams! LADS HOST, SHALT DOS. HAS DOLTS. AD SLOTHS, HATS SOLD. ASS HO, LTD.
    1. Re:Yah, really? by interkin3tic · · Score: 4, Insightful

      A more recent example than asprin would be Taxol/Paclitaxel. Discovered in 1967 from the bark of the Pacific yew tree, and useful in treating cancer.

      Anyway, stories such as these are to inform if you're interested. News for nerds and all that. You don't give a shit, that's fine. No one was expecting you to get off your couch and start helping search for the cure for cancer as a result of this story. So go back to whatever it was you were doing. Maybe reading about apple suing samsung or something exciting like that. The biology community apologizes for this not being as interesting as you would hope. We'll get back to searching the ends of the earth for the cure to cancer. We probably won't bother slapping you around if we find anything useful though. Just maybe think about supporting funding for the NIH or cancer research. As miraculous as taxol is (saved my mother's life, breast cancer), the side effects are tough. You really want us searching the oceans and rainforests for better drugs before you develop cancer yourself.

  11. Lot of butt-hurt slashdotters here tonight by Andy+Prough · · Score: 2

    I for one welcome our nearly infinite sea-faring microbial overlords.

  12. Re:Industry? by Anonymous Coward · · Score: 2, Funny

    Leaving aside that you are regurgitating stupidity right now, there is a certain fraction of humanoid life on this planet motivated by social responsibility. We call these organisms "humans".

  13. Re:Industry? by gagol · · Score: 4, Insightful

    Cause outside the US most people are covered by a good public health care program?

    --
    Tomorrow is another day...
  14. Craig Venter also did this 2003-2006: GOSE by girlinatrainingbra · · Score: 4, Informative
    Craig Venter also did this in the not-so-distant past after working on the Human Genome Project. It was called the Global Ocean Sampling Expedition (GOSE) which was an ocean exploration genome project.

    GOSE also aimed to trawl the bio-diversity of marine life in order to perform metagenomics analysis and find out about the diversity of marine genetic material. All of the data was put into UC-San-Diego's division of Cal-I-T2 (a href=http://en.wikipedia.org/wiki/California_Institute_for_Telecommunications_and_Information_Technology>California Institute for Telecommunications and Information Technology

  15. just the genetic sequences ... by Anonymous Coward · · Score: 3, Insightful

    and not the bacteria (or other marine organisms etc.) theirselves are of interest.

    While some people point out the right problems (IP, patents, etc.) others seem to think that the researchers suggest '(over)fishing' the bacteria.
    Nope, they're only interesting as a source of yet unknown enzymes.
    But this is done everywhere, metagenomics (collecting 'just' DNA from soil/marine/etc. samples) is a new approach to make use of mother nature's diversity.
    (The cool thing about this approach is, while it's generally impossible to cultivate most of these organisms, as their habitat and environment are rather unknown, it's rather easy to "boil everything up" and sequence any remaining DNA. This approach is just getting possible by better possibilites in sequencing and bioinformatics)

    Having heard a lecture on the subject recently, I can tell you that these approaches are especially great as they rather quickly deliver working results:
    Imagine you wanted to perform a certain reaction by biotechnological means. There might be enzymes which do something similar, but not quite right - then it's nice if you can look for 'similars' in a large database and hopefully find one which better suits your means.
    For example could a marine micro organism from arctic regions contain enzymes especially optimized for colder temperatures.
    Imagine one of these in your laundry detergent, allowing even lower temperatures in the washing machine, saving energy and CO2 ... there you go, biotech saves the planet ;)

    From what I know, these JC Venter metagenomic sequences from marine samples are just deposited in public databases, and not yet patented. How could they? Without any further analysis or use, one can hardly file a patent.

  16. Re:Industry? by interkin3tic · · Score: 4, Informative

    Maybe because it goes the other way in reality: the government funds the basic research, and then gives to private industries, often for next to nothing, who then sell it if it's profitable. Example: taxol.

    Look at it this way: most of the bragging about government achievements is done by politicians who signed off on it telling you why they should be re-elected or elected to higher offices. Big pharma spends way more on taking credit for medical breakthroughs (or just as often, trying to tell you something that's just repackaging is actually a medical breakthrough.) Who do you think gets credit in that tug of war? It's not the government-funded scientists either way.

  17. Would you kindly... by lourd_baltimore · · Score: 2

    Investigate the regenerative properties of some sea slugs?

  18. You guys are falling for the buzz by 140Mandak262Jamuna · · Score: 2

    Some tiny startup is planning to go hunting for sugar daddy venture capital. They have hired some PR firm to plant fluff pieces to create a buzz. Probably the same firm that cleaned up on "treasure trove of genetic goodies in the rain forest" crowd. They never change the modus operandi. What worked once will always work again.

    --
    sed -e 's/Chuck Norris/Rajnikant/g' joke > fact
  19. Re:Industry? by Rich0 · · Score: 3, Insightful

    And who paid to figure out if taxol worked and was safe? And how much did that cost? And how many other compounds did that company pay for clinical trials on which didn't pan out? The profits for taxol had to cover all of that.

    Taxol is a rare example of when government research actually led to a useful drug. Most compounds discovered in government labs turn out to not work, but of course you don't spend $5/pill for the products that don't work, so you're less likely to complain about those. The companies who develop them certainly spend money on them though.

    I'm all for having some end-to-end government R&D with the resulting compounds freely licensed to manufacturers in any country that reciprocates, but don't think that it will be any less expensive in the end then what we're paying for pills today. The main difference would be that the costs are borne by taxpayers rather than patients, which has the benefit of being more progressive.

    Government does some of the most important drug research there is. However, it also turns out to be some of the least expensive. There are still tons of expenses to be recouped once compounds are licensed or developed by a pharmaceutical company - and somebody has to pay for them. Most drugs lose money, and a few drugs make TONS of money. The industry has been pretty stagnant for a decade, so you can't just look at the one side of things.