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Scientists Create 'Designer Yeast' In Major Step Toward Synthetic Life (washingtonpost.com)

An anonymous reader quotes a report from Washington Post: In a significant advance toward creating the first "designer" complex cell, scientists say they are one-third of the way to synthesizing the complete genome of baker's yeast. In seven studies published Thursday in the journal Science, the researchers describe how they built six of the 16 chromosomes required for the yeast Saccharomyces cerevisiae, altering the genetic material to edit out some genes and write in new characteristics. The chromosomes generated this time represent the largest amount of genetic material ever synthesized, and the new Sc2.0 cells are substantially different from their natural, or "wild type," relatives. Among the most significant of these new features is a program the scientists called "SCRaMbLE," or "Synthetic Chromosome Recombination and Modification by LoxP-mediated Evolution" (scientists are congenitally disposed toward convoluted acronyms). The program allows scientists to rearrange elements within the genome to generate new and potentially useful permutations. Whereas many of Boeke's peers labor for years in the lab trying to genetically modify organisms, the SCRaMbLE system "lets the yeast do the work and lets the yeast teach us new biology," Jef Boeke, director of New York University Langone's Institute for Systems Genetics and an organizer of the project, said. It's like a version of the lottery in which you can continuously and instantaneously roll new numbers until you get a result you want. Other innovations in the Sc2.0 genome include the removal of duplicate bits of genetic code and the addition of short genetic sequences that distinguish synthetic chromosomes from their natural counterparts. Unlike other synthetic organisms, the engineered yeast is a eukaryote -- a complex cell with diverse internal structures, just like the cells in the human body. It has more genetic material than the bacteria synthesized by the Venter Institute and Harvard projects.

39 comments

  1. what about booze??? by FudRucker · · Score: 4, Interesting

    maybe these scientists have a taste for good booze and can make custom yeasts to brew some extra good beers & wines and brandies and some brews that distill better than your average spirits

    --
    Politics is Treachery, Religion is Brainwashing
    1. Re:what about booze??? by VanGarrett · · Score: 3, Interesting

      White Labs' Super High Gravity Ale Yeast (WLP099) can already ferment up to 25% ABV, before the alcohol is enough to kill it. It'd certainly be interesting to see if this method can produce a strain sufficiently resilient to get higher than that.

    2. Re:what about booze??? by xtal · · Score: 1

      High gravity / high alcohol tolerance yeasts generally also produce booze that tastes like kerosene.

      --
      ..don't panic
  2. Time to read Asimov's Caves of Steel again... by choovanski · · Score: 5, Interesting

    He watched R. Daneel leave, then said to Clousarr, "You're a chemist?" "I'm a zymologist, if you don't mind." "What's the difference?" Clousan looked lofty. "A chemist is a soup-pusher, a stink- operator. A zymologist is a man who helps keep a few billion people alive. I'm a yeast-culture specialist." "All right," said Baley. But Clousarr went on, "This laboratory keeps New York Yeast going. There isn't one day, not one damned hour, that we haven't got cultures of every strain of yeast in the company growing in our kettles. We check and adjust the food factor requirements. We make sure it's breeding true. We twist the genetics, start the new strains and weed them out, sort out their properties and mold them again. "When New Yorkers started getting strawberries out of season a couple of years back, those weren't strawberries, fella. Those were a special high-sugar yeast culture with true-bred color and just a dash of flavor additive. It was developed right here in this room."

    1. Re:Time to read Asimov's Caves of Steel again... by molarmass192 · · Score: 2

      The guy was a biochemistry PhD, but the "twist the genetics" bit is pretty impressive concept considering it was written in the 50s. Book aside, it's pretty impressive what's going on in genomic research lately. The only question is that if unexpected behavior in human engineered code causes a bad time for a computer system, does unexpected behavior in a human engineered organism stay local or will it impact the larger environmental "runtime".

      --

      Good people do not need laws to tell them to act responsibly, while bad people will find a way around the laws-Plato
    2. Re:Time to read Asimov's Caves of Steel again... by geantvert · · Score: 1

      In Asimov mind, "Twist the genetics" probably did not have the same meaning that it has today. The science of the "genetics" so the study of heredity was already well established in the 50s (see Mendel, William Bateson, ...).

    3. Re:Time to read Asimov's Caves of Steel again... by The+Real+Dr+John · · Score: 1

      With the newer CRISPR/cas9 editing technology it is getting to be relatively easy to edit genomes. Let's just hope that there isn't too much biological blowback. So far there haven't been serious incidents suggesting that advanced gene editing might not be as dangerous as originally feared. Of course, it all depends on what you are trying to accomplish. If your goal is to make food crops resistant to poisons so that you can spray more poisons on people's food, then the unintended outcomes are going to be more numerous than if you are trying to cure genetic disorders in people.

      --
      A brain is a terrible thing to waste... Mind? That's debatable.
  3. These celebs... by Zemran · · Score: 2

    ...and their designer candida.

    --
    I love stacking my barbecues in the shed at the end of summer - you can't beat a bit of grill on grill action.
  4. Obligatory by Anonymous Coward · · Score: 0

    I for one welcome our new Yeast Overlords.

  5. Uh oh. by msauve · · Score: 4, Insightful

    "It's like a version of the lottery in which you can continuously and instantaneously roll new numbers until you get a result you want."

    Or a result you don't want. What could possibly go wrong?

    --
    "National Security is the chief cause of national insecurity." - Celine's First Law
    1. Re:Uh oh. by sheramil · · Score: 1

      If they have a strain of yeast that does what they want, do they really want it to scramble and evolve into something that doesn't do what they want?

  6. Related old news: opioids produced by GMO yeast by xororand · · Score: 4, Informative

    There has been a proof-of-concept for synthesizing opioids with genetically modified yeast.

    we engineered yeast to produce the selected opioid compounds thebaine and hydrocodone starting from sugar. All work was conducted in a laboratory that is permitted and secured for work with controlled substances. We combined enzyme discovery, enzyme engineering, and pathway and strain optimization to realize full opiate biosynthesis in yeast. The resulting opioid biosynthesis strains required expression of 21 (thebaine) and 23 (hydrocodone) enzyme activities from plants, mammals, bacteria, and yeast itself. This is a proof-of-principle, and major hurdles remain before optimization and scale up could be achieved. Open discussions of options for governing this technology are also needed in order to responsibly realize alternative supplies for these medically relevant compounds.

    If implemented successfully on a large scale, what are the consequences for traditional opium farmers from already poor regions?

    1. Re:Related old news: opioids produced by GMO yeast by Anonymous Coward · · Score: 0

      If implemented successfully on a large scale, what are the consequences for traditional opium farmers from already poor regions?

      Maybe they'll grow food instead? IANAOF, but it seems like there should be plenty of other crops they could grow.

    2. Re:Related old news: opioids produced by GMO yeast by Anonymous Coward · · Score: 0

      Not in semi-arid environments, and certainly not enough variety to be remotely self-sustaining. Opium is the crop of choice because it is an export crop. The fields used for it aren't suited for anything else.

    3. Re:Related old news: opioids produced by GMO yeast by slazzy · · Score: 1

      But then how will they make money to buy food? Oh, wait...

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      Website Just Down For Me? Find out
    4. Re:Related old news: opioids produced by GMO yeast by ShanghaiBill · · Score: 1

      If implemented successfully on a large scale, what are the consequences for traditional opium farmers from already poor regions?

      Most likely they will be less poor. Illegal drug production leads to corruption and conflict. The FARC, the Shining Path, the Taliban, and many other narco terrorists fund their organizations with drug money. The farmers at the bottom do not benefit.

    5. Re:Related old news: opioids produced by GMO yeast by Neuronwelder · · Score: 0

      They can make Hemp. Just like we did in WW1. Those were the days we had brains. Since Hemp can make everything from a practically unbreakable car body (Henry Ford on youtube) To a house, to clothing, fuel for electrical coal generators, paper, to hundreds of thousand other good. things. Since were dumb enough not to grow it anymore, let them have the money! It requires little water and no pesticides.

    6. Re:Related old news: opioids produced by GMO yeast by Anonymous Coward · · Score: 0

      They can make Hemp. Just like we did in WW1. Those were the days we had brains. Since Hemp can make everything from a practically unbreakable car body (Henry Ford on youtube) To a house, to clothing, fuel for electrical coal generators, paper, to hundreds of thousand other good. things. Since were dumb enough not to grow it anymore, let them have the money! It requires little water and no pesticides.

      Now that weed's starting to be legalised, I would have thought we could dispense with all this terrible hippy horseshit about it being some kind of miracle material for all uses?

  7. Ignorant children by Anonymous Coward · · Score: 0

    The problem is not synthesizing a genome but designing it from scratch, which would require understanding how it works. Humanity is far from that. The best term for such awkward attempts is tinkering.

    1. Re: Ignorant children by Anonymous Coward · · Score: 0

      No shit Sherlock. This is just a steppingstone.

    2. Re:Ignorant children by Anonymous Coward · · Score: 0

      faggot

  8. This is awesome by CaseCrash · · Score: 3, Insightful

    I see the haters are already out, but it looks like we're closer to being the masters of DNA. This is f'ing awesome.

    --
    No, that link you posted to a web comic we've all seen a hundred times is not "obligatory."
    1. Re:This is awesome by Anonymous Coward · · Score: 0

      Huh. Wonder how many see your tag and find it obligatory to provide you with that special link.

  9. hardly creation more like a hacked copy by Anonymous Coward · · Score: 0

    hardly a creation but a hacked copy.

  10. How far can you invade our Scramble system? by Anonymous Coward · · Score: 0
  11. This is new? by Anonymous Coward · · Score: 0

    There was news not that long ago of genetically engineering yeast strains to produce precursor chemicals for drugs. While extremely inefficient I seem to recall proof of concept work that generated minute amounts of opioid precursors with designer yeast and a f*cktonne of sugar.

  12. Can you wrap it in chocolate? by future+assassin · · Score: 1

    Biological drugs hmmmmm imagine the kinds of schrooms they create....

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    by TheSpoom (715771) Uncaring Linux user here. I have nothing to add to this but please continue. *munches popcorn*
  13. I am weary of phoney science headlines by Anonymous Coward · · Score: 0

    NOBODY is CREATING life here. Every single headline in the past 30 years that claimed scientists had "created life" or were on the verge of doing so was bogus. The most these clowns are doing is re-arranging already living things NOT creating life. They do not even know what life IS. They can describe some of life's attributes or effects or prerequisites but they do not know what it actually IS and you cannot intentionally create a thing without first knowing what it is.

    I do not call these people "clowns" lightly, nor do I apply the term to all scientists or all biologists etc (a disclaimer I must sadly make in the era of outraged millenials who have low reading comprehension skills). I apply the term to the ones who make outrageous false claims to promote themselves and their work. What they are doing could well be perfectly valid and even productive science on yeast - but it becomes dishonest rubbish when promoted as related to the creation of life. One might sooner claim that experiments on homosexuality in gerbils (which I suppose might be a thing) was paving the way to manned Mars missions.

  14. Re: Related old news: opioids produced by GMO yeas by Anonymous Coward · · Score: 0

    But how does that help the legal opium farmers who lose their market?

  15. from the 70s by Anonymous Coward · · Score: 0

    Well, a good yeast for THC, one for each of the age drugs ( diabetes - Metformin, Cholesterol - Simvastatin, Amlodipine - High blood pressure...),
    and assortment of meat proteins ( Emu, Chicken, Beef 1, Beef 2, Salmon, Venison, Buffalo, and one at random called Soylent Green...),
    one for non-lactose milk... These would be a good start. Yeast strains for desgner drugs would be a second step.
    In a slightly different direction is synthetc Cotton ( a sure money maker ), designer leather ( already in progress...), and a few of the major hardwoods
    ( check out the prices online! defnitely in the range for a competitive synthetic Oak, Maple, Fir, Cedar, Redwood, Teak, Ironwood and a bunch of others).

    I had considered Kudzu as a base plane for THC, but went into physics and not plant genetics.

    1. Re:from the 70s by Anonymous Coward · · Score: 0

      There are problems with cell strand orientation for wood
      base plant? for THC ? a noble cause.
      And what about metal deposition? A definite area for consderation!

    2. Re:from the 70s by Anonymous Coward · · Score: 0

      Chocolate! Cocoa!
      There's money in them thar chocolate yeast bugs!

  16. May I suggest.. by Sqreater · · Score: 1

    May I suggest that this may be a way to keep ahead of evolving bacterial strains by letting an organism and this process evolve the antibiotic producing organism that is capable of producing an antibiotic. Think in terms of the penicillin mold.

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    E Proelio Veritas.
  17. In other news by fyngyrz · · Score: 1

    In other news, a laboratory at the NYU Langone Medical Center was today discovered to have been filled with a randomly created strain of baker's yeast that expresses a profound affinity for human flesh. No sign of any of the Medical Center lab personnel were found, and all are presumed lost.

    There will be a memorial bake sale on Sunday.

    --
    I've fallen off your lawn, and I can't get up.
  18. Obesatory by fyngyrz · · Score: 1

    You trying to get a rise out of us? Because that was really only half-baked, no matter how you slice it.

    Just kidding. I'm only here to butter you up.

    --
    I've fallen off your lawn, and I can't get up.
  19. Imagine Beowulf of those! by Anonymous Coward · · Score: 0

    (duck for the cover)

  20. Re: may i recommend by Anonymous Coward · · Score: 0

    nobody can take a joke