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  1. The Register? The Inquirer, surely? on US Government Caught Manipulating Wikipedia · · Score: 2, Informative

    Er. Isn't the link to a publication called "The Inquirer", not the Register. Great fact checking, there...

  2. Great article! on Microsoft Should Abandon Vista? · · Score: 4, Insightful

    "Of course, categorically dumping an operating system is quite difficult.." - I suppose it will be! When will Microsoft come to its senses and completely abandon its new Os on the basis of this sensible bloggers devastating comments?!!1!

    "With Mac OS X hot on its tail, Vista is simply not capable of competing at an OS level.."
    Of course! It makes such sense!!

    This article is unmitigated crap, and I'm typing this on a MacbookPro, so I have a bias towards agreeing with the idiot.

  3. you are being overly dogmatic here on Science vs. Homeopathy · · Score: 1

    The wormwood example is fundamentally different from homeopathy. The only way that homeopathy could actually work is if the homeopath failed to carry out the procedure properly and gave the patient an undiluted solution of a compound that was an effective treatment. /As described/ homeopathy /cannot/ work.

    I like the software analogies, but we are talking about someone claiming their computer works even though it is just an empty box. Yes, you could test the hypothesis that empty space is capable of carrying out computation, but the answer is easy to predict.

    Actually, software IS maths. So is medicine, and so is everything else. It is just very complex mathematics! For infinite dilutiions to be effective, many other things would have to be false - the 'memory of water' idea would have horrible implications - so, yes, it is reasonable in this case to say that it is logically impossible, given what else we know. Of course, if we are all living inside a simulation, then the world would not have to be consistent, but then there wouldn't be much point in testing anything.

  4. Re:Kevlar on New Carbon-based Paper Stronger Than Nanotubes · · Score: 1

    Kevlar is hydrogen bonded, graphene is not. So, "exactly the same mechanism" as what? Normal paper? I guess the cellulose fibers in paper are hydrogen bonded. Perhaps.

  5. 50K doesn't seem that much I guess... on Obama's MySpace Drama · · Score: 4, Insightful

    And if, as he claims, they suggested a one-time fee, and then rejected his offer as an attempt to moneygrab, that is sneaky.

    But why would you need money for this, anyway? Compenstation for work already done?

    Anyway, considering the millions raised for campaigning, 50,000 is not so much.

  6. Re:I don't understand on Photosynthesis May Rely On Quantum Effect · · Score: 1

    I understand the 'classical' model of photosynthesis, where it goes something like:

    light->chlorophyll->quinone->->proton pump

    Very, very vaguely. And the transfer is considered to be an electron 'hopping' from one molecule to the next.

    This new, quantum model talks about the transfer occuring through resonance.

    Actually, it doesn't make much sense to me, either!

  7. damn! on Photosynthesis May Rely On Quantum Effect · · Score: 1

    (mindpiss, as they say on b3ta).

    Okay, then. Also (vaguely related to quantum mechanics in biology:

    Quantum Evolution by Johnjoe McFadden.

    The Rainbow and the Worm by Mae-Wan Ho.

  8. I guess you'll want to read on Photosynthesis May Rely On Quantum Effect · · Score: 1

    The Emperor's New Mind by http://en.wikipedia.org/wiki/Roger_Penrose then.

    I don't buy it, personally. I don't see why microtubules act as mini quantum computers, but hey.

  9. really? on Toward a 3D Search Engine · · Score: 2, Insightful

    Although the crystal structure is not the same as the structure in solution, it can't be that far off.

    Crystals are pretty watery, much like the cell. Unless packing contacts are altering the active site, they are unlikely to be much different.

    Also, the bulk of the structure is there to keep the active site residues in a particular orientation.

    Perhaps management vitriol was partially justified? :) Only joking, you may be right. I don't work on drug design, only backbone structure.

  10. Re:Problem...? on Toward a 3D Search Engine · · Score: 2, Interesting

    Hmmm. Maybe it depends on whether you can convert from internal coordinates to a 3D structure. What you seem to be suggesting is moving through structure space, matching as you go along.

    So at any point, you have to generate images of the 'neighbours' of the current structure. It could work. Maybe.

  11. Re:Good, but just one tiny bit of the problem on Toward a 3D Search Engine · · Score: 1

    It's not a protein search engine, it's for small molecules.

    Also, the search space for polypeptides is more restricted than that. There are only so many allowed torsion angles.

  12. the larger the flake, the more shapes on Two Snowflakes May Be Alike After All · · Score: 1

    I would have thought.

    Since, as the diameter of the flake increases, the circumference does too.

    So, the more possible paths there are around the edge - equivalent to more shapes.

    Am I wrong?

  13. Re:May not be so gloomy afterall on The Videogame Industry is Broken · · Score: 1

    Hmmm. This spurs the horse of thought (sorry, too much coffee!)

    Why don't games console makers (you know who you are...) make a flash player / java game player like wot they do do on mobile device phone things.

    I guess it might not get them any prophets, but it could be like a loss-leader or some such marketing term (ie : a mistake).

  14. Re:Working temperature? on Hydrogen-Emitting Microbe Examined · · Score: 1

    Just because it can live at such temperatures surely doesn't mean that it has to use these temperatures to carry out the h2 generation.

    Enzymes can work at a range of temps, from 0 to 100 degrees C, so there's no reason to suppose that NiFe hydrogenase (or whatever enzyme) has a catalytic requirement for a particular temp.

  15. realism on Moody Non-Photo-Realistic Driving · · Score: 1

    well, I don't think any game can really be replicated in the real world (legally). Especially not FPS...

    But, actually, shiny backdrops in racing games seem a bit pointless, since you are speeding past them at 200 mph, concentrating on the track.

  16. Re:flexible presentation of other's searches on A9.com with Syndicated Search · · Score: 1

    you asked for it...

    http://balabio.dcs.gla.ac.uk:8180/tops/pattern/s im ple?target-name=%3Cdefault%3E&target-body=NEhEhEhE hEhEhEhEC&target-tail=1%3A3P1%3A15P3%3A5P5%3A7P7%3 A9P9%3A11P11%3A13P13%3A15P&topnum=10&pagesize=10&s ubclasses=cath%2Ccrep%2Carep%2Ctrep%2Chrep&targetS ervice=advanced-match

    minus the spaces, of course.

    hmmm. perhaps I'll clean up the url syntax.

  17. flexible presentation of other's searches on A9.com with Syndicated Search · · Score: 0, Offtopic

    This is a little off topic... ...but I have been running a protein structure comparison service (TOPS, if anyone cares :) that is a /kind/ of search engine.

    What I think is best about our system is the presentation of the results, not necessarily the engine itself (oh well!).

    So I was thinking that it would be cool if other 'search engines' (comparison services) could run a search and submit the results to our servers for display.

    Kind of like this? Would need some kind of protocol for describing matches.

  18. Re:Google api? on A9.com with Syndicated Search · · Score: 2, Informative

    can't you use the google api:

    http://www.google.com/apis/

    ?

  19. Re:I've always found those stats suspect on New Evidence About 'The Great Dying' 250 Million Years Ago · · Score: 5, Interesting

    The usual explanation is that the remaining species can diversify into the ecological 'space' left after the holocaust.

    In this view, in a crowded world, species are constantly in competition with each other, and diversity is held in balance, while in the time after a great extinction, all such constraints disappear, and species are free to do as they please.

  20. Usenet map on Visualizing Stories On Current Events With Newsmap · · Score: 2, Interesting

    I can't see anyone having mentioned this, and I don't know if it has featured before on /. but:

    http://www.cs.umd.edu/hcil/treemap-history/all10 20 01.jpg

    show a 'treemap' of usenet. it's kind of inevitable that 'sex' and 'erotica' should be so large ...

  21. Re:Creating crystals: bio and nano on The Arrival of Very Small Memory · · Score: 1

    hmmm.

    Certainly nanotechnology shares a lot of the problems of biology - and component assembly is one of those. However I don't see that there is all that much to be gained from using biological systems in this case.

    When you are doing nano-fabricating (IE : you are in a clean lab) there seems to me to be no harm in using purely chemical synthesis. Including, of course, bio-mimicry molecules for templating and scaffolding structures.

    The core molecule that is shown in the link is some sort of functionalised zinc porphyrin (I see a nice ferrocene group there too). I think that attaching such bulky substituents to amino acids for further attachement to tRNAs would be cumbersome.

    There are probably ways to do much the same thing with similar complex metallo-organic chemicals. Indeed, many groups have made self-assembling structures from just such rigidly units with metal ions as linkers.

    The only real reason to use biomaterials is the prospect of using mutations to alter the structure. A bit like er..PROMs (? not sure) so you could 'evolve' circuits by altering the DNA and growing the result (bit like compiling code... :) However, it would seem much more sensible to use proteins as components in the circuit (this is not, I believe, what you are suggesting?). Biological 'circuits' as they are called use metalloproteins to transfer electrical signals and charge (er..'or' charge - not a biophysicist) so it would seem reasonable to make them from protein. However, the replies to the previous version of your post are right - these might have to be thermostable (in fact, probably designed) proteins.

  22. Re:Functional Programming et al. on Intuitive Bug-less Software? · · Score: 1

    Simon Peyton Jones (http://research.microsoft.com/Users/simonpj/) recently gave a talk on making Excel more like Haskell. In fact, I have no evidence that that's not who Tailhook is...

  23. Re:Grey Goo Fallacy on Ministry of NanoEthics? · · Score: 1
    Yes, I think so, this is an argument adapted from a node on e2.

    - Grey goo would be eaten

    Why? Well, first, assume that you really can create devices between a nanometer and a micrometer in size that replicate themselves. Now realise that these must be biological - they use materials readily available in the environment to construct themselves.

    This doesn't make them 'biological'? Well, they will be eaten just as readily. Basically, if they can construct themselves from elements and molecules that are lying around, they will be made of stuff that biology likes to eat. they will therefore be eaten.