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Own a Piece of An Apple-Based Supercomputer

Graff writes "Now that Apple has come out with the Xserve G5, Virginia Tech has been swapping out parts of their 'System X' supercomputer for the more compact 1U Xserves. MacMall is selling some of those System X component G5 systems with an approximate $200 savings and an extra 512 megs of RAM over a normal G5. You can read more about it at MacCentral."

29 of 296 comments (clear)

  1. Re:PCI-X by Anonymous Coward · · Score: 1, Informative
    Who wants to use a firewire hard disk with a server? You're more likely to back up onto tape.

    try this one: Firewire tape drives. Ecrix VXA drives kick total ass. Plus it's easy to move to another machine when the server itself packs it in.

    Also, remember these were desktop machines originally, just put in racks to be used as nodes in the supercomputer.

  2. Re:Wear issue? by dario_moreno · · Score: 5, Informative

    on the contrary. My 4 years experience with clusters show that after the first two months of burn-in where many components fail, you aftewards have a higher MTBF than with PCs used "normall", because in the Beowulf case the AC power is regulated, the machine is almost never switched on and off (major cause of damage because at startup every component consumes power at the same time, voltage drops, and damage occurs), temperature is kept constant, the machine is kept in a safe room where nobody ventures more often than once a week because of the cold and the noise, therefore there is no dust in the machines or grease on the contacts.

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    Google passes Turing test : see my journal
  3. Re:Some of us *should* be bitter about this... by gunnk · · Score: 5, Informative

    I'm going to have to disagree with you concerning the amount of wear and tear.

    Most computers fail either in the first month or so of use or after many years of good use. In the first case it's usually a bad component that slipped by quality control. In the latter it is simply the ravages of time. Longer quality control "burn-in" times would eliminate many of those first month failures, but the vendor really doesn't have the time/space for long burn-ins.

    Now, the Number One way to shorten the life of your computer is to turn it on and off frequently. The computer heats up when you run it and cools when it's off. The expansion and contraction of components associated with these temperature changes stresses every solder joint on every component -- and may even stress the chip-level components themselves. To lengthen the life of your hardware (at the cost of extra electricity), leave your system on unless you aren't going to be using it for a significant length of time (i.e.: don't power cycle more than once a day).

    These G5's have been on for approximately six months straight in a very well-controlled temperature environment. This is a burn-in that virtually guarantees that there were no manufacturing defects. However, since they weren't power-cycling on a regular basis, it was actually a VERY low-stress environment.

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    Life is short: void the warranty.
  4. Re:PCI-X by tr0llb4rt0 · · Score: 4, Informative

    You can do some good high speed networking using firewire.

    It's available in Mac OS and Linux.

    http://www.homenethelp.com/network/firewire.asp

    400mbps isn't to be sneezed at. With repeaters it'd probably make a decent fail-over network in case the main gigabit link failed.

    --
    Worst .sig ever!
  5. Re:Is Slashdot selling these computers? by Anonymous Coward · · Score: 1, Informative

    Fine, I pointed out that was after a $99 dollar rebate for the RAM and a $40 installation fee.

    If you notice the MacMall webite, you'll see that the extra memory with mail-in-rebate and installation-fee deal is for all the refurbished models on the page. Only the last column is the Virginia Tech Macs. The Virginia Tech machines already had extra memory installed for Virginia Tech they can't charge the installation fee again! One can guess the deal is if you want even more memory (1.5 gigs).

  6. Re:an extra 512 megs??? by Heem · · Score: 2, Informative

    In Connecticut, this practice is illegal. You can not say something is free if it involves a rebate - you must say something like :

    $100
    -$100 rebate

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    Don't Tread on Me
  7. Re:Proof? by 11223 · · Score: 4, Informative

    What I heard is that VT isn't removing the identification stickers. I don't know if MacMall is removing them or not.

  8. Re:And what about the students? by Raven42rac · · Score: 4, Informative

    First of all, how is this profiteering? They are trading in their G5s to upgrade their cluster, Virginia Tech is not selling the "old" ones, MACMALL IS! Virginia Tech is simply trading them in. So you would rather have Virginia Tech eat all the money that they spent to purchase the original lot of 1,100 instead of making them look much better to potential customers who want to purchase the use of their cluster, by leveraging the money they have already spent? It is in business to make a profit, like it or not, it is not their primary main objective (Chinpokomon!) but it can not be ignored, either. I respect your opinion that some of the G5s should have been kept around for use in labs, by students, etc. Then again, we don't know if VT traded ALL of their G5s, they just might have kept some for the uses that you and I laid out. I suppose this just shows, on a grand scale, the high resale value of Apples!

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    I hate sigs.
  9. Re:VT must be covering their Xserve purchase by Anonymous Coward · · Score: 2, Informative

    Actually, VT and Apple have both stated on a few occasions that they paid the normal price for all 1100 nodes.

  10. Re:My question is: by Selecter · · Score: 5, Informative
    They looked at Opterons and they looked at Dell( Xeons.) THEY WERE REJECTED based on cost and performance issues ( the G5 can perform a fused multiply + add in one clock cycle, multiply that times billions of iterations ) and thats something the Opteron cannot do.

    The G5 was the clear winner out of all the chips on the market, and Apple was the clear winner of the platforms considered, and they considered *ALL* of them worth considering.

    The success of the venture simply proves the superiority of keeping an open mind and not bringing tired old pre-conceptions (Apple's slow, Apple sux, etc.) to your work.

  11. Re:Some of us *should* be bitter about this... by Anonymous Coward · · Score: 1, Informative

    It's called an upgrade. They'll have a more powerful system, taking up less room, and more importantly, with a a lower powerdraw.

  12. Re:PCI-X by mbbac · · Score: 4, Informative

    Actually, FireWire supports transfers of up to 3.2Gbps depending on the interconnect used.

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    mbbac

  13. Re:PCI-X by Jo+Deisenhofer · · Score: 3, Informative

    Don't confuse PCI-X with PCI Express. PCI-X is PCI, clocked at 100/133 MHz. PCI Express is the former 3GIO technology

  14. Re:My question is: by Anonymous Coward · · Score: 2, Informative
    Oh horseshit. I've heard this so many times and it's *always* the case of someone comparing a assembled-from-Newegg machine without the costs of the operating system and the closest PC versions of all the bundled software you get with a Mac.

    A lot of the compares are done using 32 bit chips as well. Well, thats *not* a fair deal, is it? If you take a store-bought dual opteron with a AGP port and throw in all the costs of the software (the entire iLife 04 plus I got the FULL version of Quickbooks 5 preloaded on my G5, that alone costs $795) then you start coming up with real figures.

    And dont use Apple's inflated RAM cost, nobody buys Apple's RAM, they order the base amount and add to it with third party RAM.

    Why cant we all just get along?

  15. Re:PCI-X by TheRaven64 · · Score: 2, Informative

    Yes, absolutely correct. I should have stated that I was talking specifically about the FireWire included with current Macs, which is FireWire 800, and only supports transfers up to 800Mb/s.

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    I am TheRaven on Soylent News
  16. look at the specs... not for servers..... by johnpaul191 · · Score: 3, Informative
    There is a lot in these machines that a clustered supercomputer setup REALLY doesn't need. One article i read about this said the VT designer wanted to buy the chips right from IBM initially. It came down to the PowerMac G5 being the ONLY way to get those chips at the time. I guess when he made his pitch to Apple they either would not say when they expected to ship Xserves, or they were worried about looming supercomputers. i also read elsewhere that in the next year or so there are a few other massive machines that will be coming online and it's possible they would fill up the top 5. it came down to timing where a $7 Million setup could land in the top 5 machines up against machines costing 20 times as much.

    anyway if you look at the specs you can see all the silly stuff.... that cluster does not need 1100 Superdrives, or 1100 Radeon 9600 cards..... let alone size and whatnot... i'm sure it was done because the Xserves were just too far off and it was the only machine out there with the G5/970 chip for sale to anyone.

    look at the specs:


    The systems sold by MacMall are listed as 2.0GHz Power Mac G5s equipped with 1GB DDR SDRAM (2 512MB memory cards); equipped with 160GB ATA drives, a SuperDrive, ATI Radeon 9600 Pro graphics processor, Gigabit Ethernet, 3 USB 2.0 ports, 2 USB 1.1 ports, 2 FireWire 400 ports and 1 FireWire 800 port, along with an AirPort Extreme card slot and no modem -- in other words, a stock Power Mac G5 Dual 2GHz system with a memory upgrade from 512MB to 1GB


    it does seem the pulled the fibre cards out... they are optional in Xserves... maybe they just swapped those? i don't know if they are the same in both machines normally.

  17. Re:Some of us *should* be bitter about this... by Rasta+Prefect · · Score: 4, Informative
    Only 6 months of use out of these things and VT is tossing them out like yesterday's trash. Gee, thanks for doing this after delaying my order for 6 weeks back when the G5s were originally supposed to be shipping to the rest of us. Apparently you didn't need them that badly after all.

    I'm fairly sure Virginia Tech wanted the 1u cases all along (makes more sense). However, they needed the cluster up in time to make the Top 100 list. Being on that list brings in _lots_ of research money. So yes, they did need them.

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    Why?
  18. Re:Some of us *should* be bitter about this... by Henriok · · Score: 2, Informative

    Gee, thanks for doing this after delaying my order for 6 weeks back when the G5s were originally supposed to be shipping to the rest of us.

    Six weeks? VT neeeded 1100 machines. Apple shipped 220 000 G5s the first quarter. 0.5% of all machines went to VT. That ammounts to appoximately half a day of delivery delays.

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    - Henrik

    - when the Shadows descend -
  19. Re:Some of us *should* be bitter about this... by cosmo7 · · Score: 1, Informative

    I think Mac hardware depreciates more slowly than PC stuff; there's not quite the same desperate impetus to have the very latest hardware, probably because people tend to buy Macs to do work rather than play games.

    But yeah, they could have cut a better deal.

  20. Re:Some of us *should* be bitter about this... by hackstraw · · Score: 4, Informative

    Actually the list is updated every 6 months, but the one in November is the bigger of the two because that is the time for the annual supercomputing conference.

  21. Re:VT must be covering their Xserve purchase by wankledot · · Score: 3, Informative
    They've stated a number of times that they paid full price for them. Plus, they traded these machines back to Apple for Xserves, so they're not making a profit in the getting-a-check-from-Apple sense of the word.

    I believe refurb products have a 90 day warranty from Apple.

    "massive wear and tear" is also known as "verified reliability"' to some people.

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    My sig is blank, I typed this by hand.
  22. Re:Seems like no discount by NotAnotherReboot · · Score: 2, Informative

    No, Virginia Tech paid FULL PRICE for each and every one of the G5s. That was part of the deal of getting them first. Apple wasn't about to tell other people they wouldn't be getting their computers for a bit and then also take a financial hit for selling them cheaper than others were willing to pay.

  23. Re:Wear issue? by Graff · · Score: 2, Informative
    My 4 years experience with clusters show that after the first two months of burn-in where many components fail, you aftewards have a higher MTBF than with PCs used "normall"

    Lol, you're right. Think of these as "extended pre-tested" machines! Virtually guaranteed to have a lower rate of failure because they've been burnt-in already and the chances of a manufacturing defect affecting operation is lower!

    Kidding aside, these machines are gone through Apple's refurbishing program. I've bought about 20 refurbished iMacs from Apple for a lab I run and have had nothing but solid performance from all of them for the past 4 years. Apple's refurbishing program has a good reputation for producing machines that match brand new reliability.
  24. There's a very important use for firewire... by CatOne · · Score: 2, Informative

    OS X supports TCP/IP over firewire. Firewire has significantly lower latency than ethernet, and it's a shared bus.

    So Apple's biotech clusters use FW800 as a large, shared bus for distributing work packets. It's like a "free" high speed low latency third ethernet port... great for shared high-speed communications.

  25. Re:PCI-X by Theaetetus · · Score: 3, Informative
    3.2Gbits/s == 3200Mbits/s / 8 == 800 Mbyte/s

    Nope. 3200 Mbits/s / 8 == 400 MByte/s.

    1394b supports 800 Mbit/s over cat5, 1600 Mbit/s over poly-fiber, and 3200 Mbit/s over glass-fiber. Grandparent was right.

    -T

  26. Re:My question is:, MAC by Hoser+McMoose · · Score: 3, Informative

    That's an integer multiply-add. The PowerPC 970 can do a double-precision floating point multiple-add, and that is what the Opteron and P4 lack. They can get pretty decent throughput for this sort of thing using SSE2, but only about half of the throughput, clock for clock, that a PPC 970 can get.

    Given that getting on the Top500 list seemed to the main goal of this system, and that list uses only the (very limited) Linpack benchmark which is essentially nothing but multiply-adds, this makes the PPC 970 a much better chip. Of course, for real-world code, the difference might not be nearly as large and in many situations the P4 or Opteron could easily be a lot faster.

    Of course, one question that could easily come out of this is WHY doesn't SSE2 include a double-precision floating point multiply-add instruction? You would have to ask Intel about that one, because it seems like a natural instruction to have in SSE2 if you ask me. Even with the updated SSE3 they didn't add this.

  27. SOLD OUT as of 10:20AM PST by Photo_Designer · · Score: 5, Informative

    Just called, no need to call.. they're all gone.. shucks.

    -Jim

  28. Re:My question is:, MAC by stephentyrone · · Score: 4, Informative

    Not every. But most. Solving ODE's usually boils down to iterating a (possibly implicit) linear system. Solving PDE's with finite differences does too. Or with finite elements. Or spectral methods. Lots of statistical computations do too.

    Certainly there *are* scientific applications that don't involve multiply-adds, it's just that the vast bulk of scientific computations that are suitable for parallelization really boil down to solving linear systems, some kind of linear iteration, least-squares problems, or some combination. All of which are solved using lots of multiply-adds. So, while linpack isn't the end-all and be-all of hpc benchmarks, i'd say that it's a pretty good guideline; i'd also say that the speed of multiply-adds matters a whole hell of a lot for scientific computing.

  29. Re:My question is:, MAC by Wesley+Felter · · Score: 2, Informative

    WHY doesn't SSE2 include a double-precision floating point multiply-add instruction?

    Most instructions take two operands, but a multiply-add takes three, so you need an extra port on the register file and enough space in the instruction encoding to fit four register numbers. I'm not familiar with the specifics of SSE2, though.