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Viruses Infected By Viruses

SpaceAdmiral writes "Scientists have discovered a virus that can infect another virus. The fact that viruses can essentially get sick may change the debate over whether they are alive or not. Check out Nature for a slightly more technical article about the 'virophage.'"

74 of 341 comments (clear)

  1. cancer by the_Bionic_lemming · · Score: 2, Funny

    How long till these things are linked to stuff like cancer?

    --
    _ _ _ Go for the eyes Boo! GO FOR THE EYES!
    1. Re:cancer by smittyoneeach · · Score: 4, Insightful

      Only a few years ago.

      --
      Get thee glass eyes, and, like a scurvy politician, seem to see things thou dost not.--King Lear
    2. Re:cancer by linuxbert · · Score: 4, Informative

      in fact Viruses have been linked to cancer. Human Pamplona Virus (HPV) is thought to be solely responsible for cases of cervical cancer. Hence the push to get them all vaccinated at a young age before they start having sex.

    3. Re:cancer by wizardforce · · Score: 3, Informative

      HTLV-1 causes changes in gene expression resulting in adult t-cell leukemia. This year my advisor had a paper on this very research detailing some of the changes which are involved: http://www.jbc.org/cgi/content/abstract/277/51/49459 basically the idea is that the virus in its attempt to replicate its self using cellular machinery alters the expression of specific genes, Tax, CREB and histones. better explained from my advisor: "HTLV-I Tax functions to short circuit the normal regulation of cell cycle progression by abrogating the need for mitogen stimulation and blocking checkpoint controls, resulting in unregulated initiation of S phase." in other words, the virus kicks out some of the cell regulatory controls that at least in part prevent it from becoming a cancer cell.

      --
      Sigs are too short to say anything truly profound so read the above post instead.
    4. Re:cancer by SpottedKuh · · Score: 5, Interesting

      Didn't you hear?, everything is linked to cancer or at least if you listen to the news thats what it seems like.

      There was a very interesting editorial piece in my local newspaper today on pretty much this topic that deserves to be read by anyone working in health / safety / threat / etc. research.

      The short point is that when every preliminary study, or even hypothesis, is presented by the news media in the same fashion as something that has stood up to rigourous testing (e.g., smoking causes cancer), people begin to filter out everything.

      That being said, my short summary doesn't do the editorial piece justice.

    5. Re:cancer by Anonymous Coward · · Score: 5, Funny

      No, no! Human Pamplona virus is the one that makes seemingly healthy, sane people go running with the bulls!

    6. Re:cancer by Mal-2 · · Score: 5, Informative

      Human Pamplona Virus (HPV) is thought to be solely responsible for cases of cervical cancer.

      I believe you meant papilloma (a virus that induces warts and similar growths), not Pamplona (a town where you can be an idiot and get yourself gored by a bull).

      Mal-2

      --
      How is the Riemann zeta function like Trump rallies? Both have an endless number of trivial zeros.
    7. Re:cancer by spoop · · Score: 2, Funny

      Human Pamplona Virus? Is that the one that chases you through the streets?

      --
      I blame geof's speakers.
    8. Re:cancer by LightPhoenix7 · · Score: 5, Insightful

      This bigger point being - while science may have come a long way, reporting of science in the media has not.

    9. Re:cancer by LunaticTippy · · Score: 2, Informative

      Cervical cancer kills nearly 4000 US women a year. This could be reduced drastically by vaccination. Vaccination also provides other benefits, such as not becoming infected with genital warts.

      I think it is sad how obsessed with the illusion of safety we are becoming, but this one is pretty reasonable.

      --
      Man, you really need that seminar!
    10. Re:cancer by ceoyoyo · · Score: 2, Informative

      True, but those are viruses that infect humans. The point of this virus is that it infects another virus. Actually, when you read the article, it doesn't so much infect the mother virus as hijack the mama virus's hijacked replication machinery, which was originally co-opted from the host cell.

  2. We call it 3 stooges syndrome and by Joe+The+Dragon · · Score: 3, Insightful

    We call it 3 stooges syndrome and Mr. Burns has it.

  3. Re:reproduction by LiquidHAL · · Score: 3, Informative

    I'm pretty sure they can reproduce, else there would be no risk of spreading them and they'd all die out soon after coming into being.

  4. Endlessly recusrive life definitions by Anonymous Coward · · Score: 5, Funny

    "The fact that viruses can essentially get sick may change the debate over whether they are alive or not."

    Ya ... to the debate over whether the viruses that make the viruses sick are alive or not.

    1. Re:Endlessly recusrive life definitions by Anonymous Coward · · Score: 5, Funny

      "The fact that viruses can essentially get sick may change the debate over whether they are alive or not."

      Ya ... to the debate over whether the viruses that make the viruses sick are alive or not.

      It's living viruses all the way down.

    2. Re:Endlessly recusrive life definitions by Brian+Gordon · · Score: 2, Insightful

      Well they probably don't make themselves sick. Is there a neverending chain of viruses making other viruses sick? I suppose a PO box could, in theory, break the chain..

  5. Re:reproduction by ShadowRangerRIT · · Score: 5, Informative

    The reason your school taught you that is because the definition of living usually taught in schools includes such characteristics as:

    1. Metabolic function
    2. Physical Growth
    3. Independent reproduction

    just to name a few. Viruses don't possess any metabolic function (they use the host cells hijacked machinery), they don't grow (once created, they are essentially static objects until they bump into a cell), and they have no means of independent reproduction (again, the hijacked cells reproduce the virus).

    On the other hand, many people simplify the definition of life to solely the ability to reproduce (independently or not), which makes viruses alive, but also makes prions alive, and makes it fairly easy for humans to "create life" in the form of self-reproducing machines.

    --
    $_ = "wftedskaebjgdpjgidbsmnjgcdwatb"; tr/a-z/oh, turtleneck Phrase Jar!/; print
  6. Of Viruses and Fleas by Nymz · · Score: 4, Insightful

    Great fleas have little fleas upon their backs to bite 'em,
    And little fleas have lesser fleas, and so ad infinitum,
    And the great fleas themselves, in turn, have greater fleas to go on,
    While these again have greater still, and greater still, and so on.

    - Augustus de Morgan, A Budget of Paradoxes

    While I haven't heard of a virus hijacking another virus, I have heard of researchers hijacking viruses to do good things.

    1. Re:Of Viruses and Fleas by FiloEleven · · Score: 2, Interesting

      You probably should have posted that under your username. You may be doomed to languish in obscurity in this thread as well as in the minds of the healthy majority.

      There is some merit for caution, certainly, but there are too many barriers in place for people such as (perhaps) yourself who would jump at the chance of receiving treatment, no matter how experimental. As long as the treatment has no chance of mutating and running rampant (a scenario that is much less likely than is generally portrayed), people should have the right to volunteer for experimental treatment. It should go without saying that there would need to be a waiver of liability in case such treatment turned out to be harmful to the individual.

      "Playing God" is one of those phrases that is always trotted out for emotional impact yet has no meaning whatsoever, except that whosoever spaketh the phrase should be smited with extreme prejudice.

  7. Re:reproduction by evolvearth · · Score: 4, Interesting

    That's pretty much why viruses aren't considered alive, as they only propagate by hijacking living organisms' replication machinery. Eunuchs are individuals, that the definition of life applies to species, not individuals. Mules can occasionally reproduce, but is rare and it's due to the unequal distribution of chromosomes in meiosis. This isn't why they would be consider alive, they are the offspring of organisms that are alive. It's just an anomaly of nature. All viruses are parasites that depend on a host's replicating machinery by definition, therefore cannot be considered living.

  8. in school? by commodoresloat · · Score: 2, Insightful

    you must be one of those students who are learning to write viruses...

  9. not alive by rritterson · · Score: 4, Interesting

    No, they are not alive even if they can get sick. Viruses, even infected ones, cannot self-replicate as they require the use of a host and host machinery. If you can find me a self-templating virus, then we'd have an interesting discussion...

    viruses infecting viruses is still cool though.

    --
    -Ryan
    AUWYHSTOT (Acronyms are Useless When You Have to Spell Them Out Too)
    1. Re:not alive by Telvin_3d · · Score: 4, Insightful

      Neither can thousands of other parasitic species. All the same no one debates the status of all sorts of fungus and ferns and others who tap directly into the circulatory system and other facilities of their host and cannot survive or replicate without them.

      If a true answer or classification as to whether viruses are alive or not comes about, I suspect it will be far more subtle and elegant.

    2. Re:not alive by fm6 · · Score: 4, Insightful

      Those parasitic species know how to do cellular reproduction. They also know how to metabolize stuff. They interact with their environment, even if that environment is another species. Virus are just reproduction machines. If RNA is the software of biology, the individual living things are the computers, and a virus is just a floppy disk that can't do anything until you stick it into the computer.

      Actually, I think the whole issue is kind of meaningless. "Alive" is a concept we invented when it seemed pretty easy to tell living things from not-living things. Like all such concepts, it tends to break down as our knowledge of the world grows, and the old definitions become hard to apply. We just went through a similar issue with the word "planet".

    3. Re:not alive by Anonymous Coward · · Score: 2, Insightful

      *I* can't self-replicate, and I'm alive.

    4. Re:not alive by BobNET · · Score: 2, Funny

      *I* can't self-replicate, and I'm alive.

      But you're on Slashdot, and therefore have no life.

    5. Re:not alive by nospam007 · · Score: 3, Insightful

      > No, they are not alive even if they can get sick. Viruses, even infected ones, cannot
      > self-replicate as they require the use of a host and host machinery. ...

      So cuckoos aren't alive either, since they rely on somebody else's 'machinery'?

    6. Re:not alive by Tablizer · · Score: 2, Interesting

      No, they are not alive even if they can get sick. Viruses, even infected ones, cannot self-replicate as they require the use of a host and host machinery. If you can find me a self-templating virus, then we'd have an interesting discussion...

      But most people would consider say a tape-worm to be "alive". Just because it lives off a host does not make it non-alive. For that matter, even humans depend on bacteria to help us digest our food. To go lion-king on ya, we are all one big circle of interdependent life.

      As far as the definition of life, I've been in fat debates on the subject, and here is the multi-factored ruler I eventually came up with:

              * Shaped by natural selection - 12 points (co-requisite A)
              * Ability to adapt to changes - 4 points (co-requisite B)
              * Reproduces - 8 points
              * Maintains self - 7 points
              * Consumes energy - 3 points
              * Complex - 2 points

      An item must score at least 15 points to qualify and have at least one of the first two properties (natural selection or adaptability). The various criteria may also get partial scores if they only partially qualify.

      The reason that at least one of the first two are needed is that life cannot be "static". If its static, its merely a machine. It must somehow change based on circumstances. A race of robots that simply makes exact copies of themselves forever is not "life" because the group does not adapt. However, if they re-engineer themselves based on circumstances, they then qualify.

      A tricky borderline case would be cloning Einstein's brain and emulating it electronically. Such brain(s) will stay the same brain forever. However, brains can learn and adapt. Thus, it qualifies at least partially on the 2nd.
                 

  10. Re:Software Viri too? by SpottedKuh · · Score: 5, Informative

    So are software viruses alive too?

    Obligatory link to an old paper: Eugene H. Spafford. Computer viruses as artificial life. Artificial Life, 1(3):249-265, 1994.

    The short answer is "no," but it makes for an interesting read if you have some whiskey to drink while you're reading it.

  11. Re:Symbiotic Virii? by maxume · · Score: 2, Insightful

    You should look into what shit is made out of.

    --
    Nerd rage is the funniest rage.
  12. here we go again by Estanislao+Mart�nez · · Score: 5, Insightful

    A lot of times in school, I was told viruses aren't alive because they can't reproduce. I always wondered if this would apply to eunichs or mule.

    For the debate over whether viruses are "alive" to make any sense, there has to be some literally essential difference between things that are alive and things that are not. The past 200 years or so of biology ought to have taught us that, contrary to what seemed evident to the ancients, there isn't any such essential difference. Organic matter is just a form of organization of inorganic manner. From the point of view of what the ancients knew, there was a huge gulf between everyday living beings and inert objects. From the point of view of what we know, there are many intermediate cases.

    So, instead of wasting time trying to decide whether viruses are "really" alive or not, you should just accept the fact that our knowledge today is advanced enough to show that the question--which we inherited from people who knew less than we do--is flawed.

    1. Re:here we go again by maxume · · Score: 2, Insightful

      There is a joke in there somewhere about you aptly demonstrating your similarity to a rock.

      --
      Nerd rage is the funniest rage.
    2. Re:here we go again by moteyalpha · · Score: 2, Insightful

      It takes time for these things to filter down to the education system because of their momentum and lag. I noticed in the early days of PC development it was almost a joke to listen to college professors talk about computer design. I recently took courses in molecular genetics and though it was good for the basics, it incorporated ideas like central dogma ( DNA - RNA ) that are also not completely true. The idea that there are self-catalyzing molecules is sufficient to define a perpetual loop. On this /. topic, ( V vs V ) it does lead into something which I have wondered about for some time, which is the chemical system underpinning of genetic life, which must surely exist in the protein world.

    3. Re:here we go again by moteyalpha · · Score: 2, Informative

      I found an open source project called 'littleb' which can be researched at littleb.org that may provide a common framework to analyze and understand these aspects of systems. If a good functional model can be made then it is easier to see how changes and evolving situations might proceed. Not enough tools exist as yet to define the points of action between molecular systems. It is certainly approaching this point and I always enjoy new topics and - converging search through noisy space - sounds like fun. Secondary electron interaction in systems which were considered to only interact with valence electrons is an interesting new area also.

    4. Re:here we go again by Anonymous Coward · · Score: 3, Interesting

      It would seem to me that there is some significant qualitative difference between humans and rocks. Extending that further, it seems there exists differences between bacteria and rocks.

      Essentially, the question is what is the largest subset of differences that can be used to distinguish between something that is alive and something that has never been alive.

      A question arising from the previous one is, what is it exactly that separates life from death. We can't even detect life - only the by-products of what we define as life. Thus we define death as the absence of those by-products of something that at one point had displayed those by-products.

      So I would disagree that the question is flawed. I think it might be oversimplified sometimes, but that at its core, it captures a very fundamental set of questions which essentially, arise from, "What does it mean to be human?" and "What is intelligence?"

    5. Re:here we go again by Estanislao+Mart�nez · · Score: 3, Insightful

      It would seem to me that there is some significant qualitative difference between humans and rocks. Extending that further, it seems there exists differences between bacteria and rocks.

      Yes, there are countless differences there. But let's assume the number of logically independent differences between a bacteria and a rock is N. This means that there are 2^N - 1 logically intermediate cases between bacteria and rocks. Now we're supposed to draw a line that says that some of those cases are definitely "life," and that some are not.

      What's worse is that the exercise of drawing that line adds nothing to our knowledge.

      Essentially, the question is what is the largest subset of differences that can be used to distinguish between something that is alive and something that has never been alive.

      The problem here is simple. Your list is either going to be arbitrary, or it's going to admit of intermediate cases. (And do note that, from the point of view of modern biology, the existence of intermediate cases between paradigm examples of "living" and "nonliving" things is, if not required, at least very convenient for the theory that all uncontroversial "living" things evolved from uncontroversial "nonliving" things.)

      A question arising from the previous one is, what is it exactly that separates life from death. We can't even detect life - only the by-products of what we define as life. Thus we define death as the absence of those by-products of something that at one point had displayed those by-products.

      Again. You identify N by-products. Then some dude discovers a thing that has N-1 of those byproducts, some other dude discovers one that has N/2, and a third one discovers a thing that has (N/2)+1 of them.

      So I would disagree that the question is flawed. I think it might be oversimplified sometimes, but that at its core, it captures a very fundamental set of questions which essentially, arise from, "What does it mean to be human?" and "What is intelligence?"

      But those are cosmological questions, not empirical ones. Please spare us from your attempt to force your cosmology on us by disguising it as biology. If you wanna talk about biology, let's stick to our understanding of empirical matters.

    6. Re:here we go again by sorak · · Score: 2, Interesting

      A lot of times in school, I was told viruses aren't alive because they can't reproduce. I always wondered if this would apply to eunichs or mule.

      For the debate over whether viruses are "alive" to make any sense, there has to be some literally essential difference between things that are alive and things that are not. The past 200 years or so of biology ought to have taught us that, contrary to what seemed evident to the ancients, there isn't any such essential difference. Organic matter is just a form of organization of inorganic manner. From the point of view of what the ancients knew, there was a huge gulf between everyday living beings and inert objects. From the point of view of what we know, there are many intermediate cases.

      So, instead of wasting time trying to decide whether viruses are "really" alive or not, you should just accept the fact that our knowledge today is advanced enough to show that the question--which we inherited from people who knew less than we do--is flawed.

      I'm wondering if this, (as well as the question of whether Pluto is a planet), it is more about coming up with an objective and internally consistent definition of what the word means.

      So, no, there may not be a great difference between one classification and another, but the argument is more about coming up with a logical way of thinking about the two.

  13. Virus eating virus eating virus.... by HeadlessNotAHorseman · · Score: 5, Funny

    So a virus that attacks viruses eh? I wonder if there a virus that attacks the virus that attacks the viruses? And a virus that attacks the virus that attacks the virus that...er...well, you know what I mean. And what if the first virus evolves to attack the last virus....every time you get one of those mysterious unidentified itches it could just be a ring of viruses all chasing each other around in circles!

    --
    I like my coffee the way I like my women - roasted and ground up into little tiny pieces.
  14. Re:Software Viri too? by Telvin_3d · · Score: 5, Funny

    The local phone book makes an interesting read if that's the excuse you need to relax with some good whikey

  15. important medical discovery by Anonymous Coward · · Score: 5, Insightful

    To me, the issue of how to define "life" is only a small side note to this discovery.

    Far more important are the consequences for medicine. Viruses can be attacked by other viruses. This is huge. Compared to bacteria, viruses have been very difficult to beat. Infectious bacteria can be combated by using anti-biotics, bacterio-phages and other means. Whereas viruses are significantly more hardy, and combating them directly is difficult. But this discovery opens the door to engineering virophages to attack viruses in our bodies that make us sick.

  16. Re:Software Viri too? by Lost+Engineer · · Score: 4, Insightful

    I will accept nothing less than slashdot comments to read with my fine whisky.

  17. this dichotomy is ludicrous by Carbon016 · · Score: 2, Interesting

    saying something is "alive" or "not alive" holds about as much weight as saying it's a "froodle doo". if the definition is standardized it should be easy to define: if not, what does it matter what we call it as long as we know what it does? attempting to apply terms that apply well to one group, from species to kingdom, to another group almost always ends in failure for this reason.

    shame on the virologist for perpetuating this craziness. the real cool part about this finding is its possible medical applications.

  18. Re:reproduction by Anonymous Coward · · Score: 5, Insightful

    makes it fairly easy for humans to "create life" in the form of self-reproducing machines.

    What's so easy about that? It's never been done! It would be a stupendous thing if it were.

  19. summary = wrong by fatduck · · Score: 5, Informative

    Summary is totally misleading. The story isn't about viruses "getting sick" - it's about a certain type of satellite virus (not new) that can only infect a host that is already infected by another virus. Essentially the satellite virus is competing with the original virus for metabolites. The discovery here is that for the first time a satellite virus is competing for these resources to such an extent that it is actually destroying the original virus.

    --
    Making you think you're crazy is a billion dollar industry.
    1. Re:summary = wrong by Anonymous Coward · · Score: 2, Informative

      you're still misleading, albeit slightly. One virus, called Sputnik, infects cells that contain another virus, called a mimivirus. Sputnik can only survive (ie replicate etc) in the presence of that mimivirus. The study shows that sputnik only appears in those regions where the mimivirus is being made. The presence of sputnik in those regions negatively affects the viability of the mimivirus. Therefore, the authors conclude, sputnik is a parasite of the mimivirus.

      That is the main thrust of the story.

      A vague notion like "competing for metabolites" does not say very much, nor is Sputnik - as you claim - a satellite virus. Sure, it has some similarities, but significantly, sat. viruses do not kill their associated viruses, in fact they often help them. also, satellite viruses encode for only one or two proteins, whereas sputnik encodes a lot more proteins....

  20. there's no easy answer by QuantumG · · Score: 5, Interesting

    Is a mule alive? It can't reproduce. Maybe you object because the mule is *made* of cells, each of which can reproduce, but your body is full of cells that can't reproduce, are they alive? What's reproduction got to do with being alive anyway? If you take a cell that can reproduce and mutate the gene that produces a necessary protein for the reproductive process, is the cell now dead? It can still metabolize, make other proteins and interact with its environment. When it no longer can, that's when we say it is dead. As such "living" already has a good definition, even if it isn't too strict, and that is the opposite of dead or, more precisely, "inert". Viruses are not just a package of DNA, (or RNA), they're also a system of proteins for delivering that package from cell to cell. A virus most definitely isn't "inert" in the same sense that a "dead" thing is. So if something isn't dead, what is it? Undead? We typically reserve that word for horror writers, and just say "alive".

    I think the objectionable aspect of calling viruses "alive" comes from people thinking of viruses as "pure information", they're not. They're complex machines that can cause their own replication in their environment. Their environment just happens to be living cells, which are also complex machines that can cause their own replication in their environment.. To accept that a virus isn't alive because it needs its environment means you have to accept that a cell that requires a water environment isn't alive, or all multi-cellular organisms are not alive. Are mitochondria alive? Are the cells that require mitochondria alive? How about yeast? How about that mule?

    --
    How we know is more important than what we know.
    1. Re:there's no easy answer by rritterson · · Score: 4, Interesting

      Parent is probably the most detailed response to my original post, so I'll address it, even though the chances (several hours after the article hit the front page) of someone reading or modding it are virtually nil.

      Comparing a virus to a mule is a false comparison. With objections to those who seek a single, simply, unified definition, the standards for a living mammal simply do not compare to those of a single celled organism, let alone a virus. The simple fact that a mule cannot reproduce does not negate the fact that it has virtually all of the reproductive machinery and virtually all of the capacity to reproduce, plus a few defects (and, in fact, some mules can reproduce). No virus is prevented from independent reproduction due to a simple defect or mutation.

      Saying that a virus 'lives' within a cell is a subtle argument that has merit. I find it lacking, though. To explain why requires an extension of my original argument: A virus, while able to harness the energy sources around it, does not have the enzymatic capacity to transmute energy sources into the ones it needs to survive and replicate. In addition, a virus is unable to respond to changing conditions around it, such as increased heat, a modified energy source, etc. Within the 'lifespan' (using the term loosely), a virus invades and replicates, period. Our cells can respond to various signaling components, change metabolism based on condition, and reproduce when asked. A virus simply cannot.

      Mitochondria are not alive, because they cannot survive outside the confines of the cell, let alone replicate. Is your heart alive? By the very same token, yeast are indeed alive. Mules are alive, though reproductively deficient. Following the same idea, and borrowing your definition, a robot that could create another copy of itself would be considered alive in the 'environment' of the factory where it was built.

      --
      -Ryan
      AUWYHSTOT (Acronyms are Useless When You Have to Spell Them Out Too)
    2. Re:there's no easy answer by tpjunkie · · Score: 2, Informative

      Actually, mitochondria do replicate within the cell, contain their own genetic material and ribosomes and even contain the genes for a full set of their own tRNA molecules. They simply do not have enough genetic information to survive on their own, outside of a cell. I would argue that they are conditionally alive; they replicate on their own and can perform respiratory functions (albeit requiring the usage of host cell proteins) yet cannot "live" on their own apart from a cellular host.

  21. Re:reproduction by arotenbe · · Score: 4, Insightful

    What about computer viruses and worms? Some people argue that those are life, especially worms which are able to reproduce in their environment independently without a host.

    --
    Tomato wedge sperm darts that are Republican.
  22. Re:Infect a Virus with a Virus on Purpose? by KGIII · · Score: 2

    I recall some reading about testing (I'm guessing a year or so ago) about the use of the virus in fighting cancer. I can't find the exact article in question but I did find this.

    Cancer-fighting virus shows promise in early clinical trial:
    http://www.physorg.com/news103082669.html

    The virus, called NV1020, is a type of herpes simplex virus modified so that it selectively replicates in virus cells, killing them in the process.

    This was in July of 2007 it would seem.

    --
    "So long and thanks for all the fish."
  23. Re:reproduction by conlaw · · Score: 5, Interesting

    What about computer viruses and worms?

    TaDa! This just in from Science Daily:

    Alaa Abi-Haidar and Luis Rocha from the Department of Informatics, Indiana University, Bloomington, USA and the Instituto Gulbenkian de Ciencia, Portugal, will present a paper entitled Adaptive Spam Detection Inspired by the Immune System on Thursday 7 August. They will describe how in the same way as the vertebrate adaptive immune system learns to distinguish harmless from harmful substances, these principles can be applied to spam detection.

    http://www.sciencedaily.com/releases/2008/08/080806194601.htm

  24. "Viruses Infected By Viruses" by Anonymous Coward · · Score: 3, Funny

    OH.. Oh.. ohhh.. ok. I read the headline and I said "Man! Again, another article about Windows Vista!"

    Kidding!

  25. Re:Classical definiton of Living Organism by jasonmanley · · Score: 3, Funny

    Somewhere in the world a grammar nazi just had a stroke at their keyboard.

    --
    http://projectleader.wordpress.com
  26. Re:reproduction by PresidentEnder · · Score: 5, Informative

    Yes. Mules cannot reproduce. The distinctions between species are based on the production of offspring which can reproduce to the nth generation.

    --
    I used to carry a bottle of whiskey for snake bite. And two snakes. -Nefarious Wheel
  27. Alive or not? by slimjim8094 · · Score: 2, Interesting

    Our definition of 'alive' is flawed. Virii, plasmids, prions, etc. are not alive, but they aren't just arrangements of molecules either. They're in some sort of limbo.

    Add to that the fact that this doesn't seem to infect other viruses, just uses a specific MHCI protein as a binding site that happens to be produced by another virus. In which case it's not that interesting.

    This is more interesting in and of itself than it is to 'our belief of what life is' or something. We've known that 'life' is a pretty flaky definition for a while now.

    --
    I have developed a truly marvelous proof of this comment, which this signature is too narrow to contain.
  28. Re:reproduction by sxeraverx · · Score: 3, Insightful

    Hell, fire's 'alive' by that definition. As long as it's got fuel, it metabolizes fuel, it physically grows as time goes on, and often, one flame will split into two when the fuel in the middle runs out. Yes, I know there's more to it than that, but I'm just pointing out that we've gotta be careful about how we define life, or else we run into a few problems we aren't anticipating.

  29. Re:reproduction by xeoron · · Score: 3, Informative

    Am I the only one that thinks that they replicate by way of using the the host tissue cells by tricking it to make duplicates?

  30. Re:reproduction by ShadowRangerRIT · · Score: 3, Informative

    Just to be clear, what I listed was only a subset of the definition. If you want a more formal definition, there is a decent one here: http://en.wikipedia.org/wiki/Life#Definitions

    Fire for instance, fails on homeostasis (no regulation of state to maintain equilibrium), organization (no cell structure; while I don't think we should require cellular structure, you do need some organizational principle), and no adaptation.

    --
    $_ = "wftedskaebjgdpjgidbsmnjgcdwatb"; tr/a-z/oh, turtleneck Phrase Jar!/; print
  31. offtopic by Anonymous Coward · · Score: 4, Informative

    If A = B why call it B?

    Because the statement that A = A is tautological, but the statement that A = B is not. The truth of the former conveys no information, but the truth of the latter does. To put it like Frege puts it, "The morning star is the morning star" is a trivial statement, but "The morning star is an evening star" is an astronomical discovery.

  32. Re:Software Viri too? by ne0n · · Score: 3, Informative

    Whiskey is the crap left over when all the whisky is gone.

    No more Laphroaig? Powers'll do ya.

    --
    $ :(){ :|:& };:
  33. Re:reproduction by thousandinone · · Score: 2, Insightful

    All viruses are parasites that depend on a host's replicating machinery by definition, therefore cannot be considered living.

    Don't all 'higher' animals begin life essentially as a parasite within the mother? Now granted, its the same species in this scenario, but it's still something to think about.

    What about fungi? They are considered organisms and alive, yet they grow as a parasite in or on a living host or other form of organic matter, and cannot grow or reproduce without said host. That's not too far off from how a virus reproduces. True, fungal reproduction does begin within the cells of the fungus itself, but the line really isn't as clear as many would think.

    On that note, no life form truly reproduces autonomously; the chemicals that life is formed of are created/encoded from outside materials. Animals take in these outside materials by eating, plants draw them from the ground, fungi from the aforementioned host/organic matter.

    That said, It is true that when viruses replicate, the 'parent' virus does not take in material to reproduce (and rather, as mentioned, hijacks the host cells systems to do so). As important as that distinction may sound, I believe that when compared to how 'true' life forms reproduce, it seems mainly a question of semantics. It's a tough call, I guess all that can be said is that viruses certainly define the term 'gray area...'

  34. Re:reproduction by Cassius+Corodes · · Score: 2, Insightful

    Any definition of life doesn't make everyone happy because life is subjective. Life exists on a scale where at one end we all agree its not alive, and on the other we all agree it is alive - however just drawing a line somewhere in between and saying from here on in its 'alive' is pointless.

    The same issue occurs when trying to define where one species stops and another starts in animals.

    --
    Control is an illusion, order our comforting lie. From chaos, through chaos, into chaos we fly
  35. Re:reproduction by houghi · · Score: 4, Funny

    Tricking to reproduce? Humans have been done this for ages.

    --
    Don't fight for your country, if your country does not fight for you.
  36. Re:reproduction by bytesex · · Score: 2, Insightful

    It's the same thing with planets and Pluto; early in school you need simple classifications. Unfortunately, some people will never really outgrow this level and continue to need them throughout their lives.

    --
    Religion is what happens when nature strikes and groupthink goes wrong.
  37. Re:reproduction by Stooshie · · Score: 2, Insightful

    ... I've never heard of a computer worm that can reproduce without actually having their code executed ...

    GGGP

    ... [viruses] are essentially static objects until they bump into a cell ...

    In other words until their code(DNA) is executed. Same definition applies.

    --
    America, Home of the Brave. ... .and the Squaw.
  38. Re:reproduction by arotenbe · · Score: 2, Informative

    Great-great-grandparent post.

    --
    Tomato wedge sperm darts that are Republican.
  39. Re:reproduction by Serious+Callers+Only · · Score: 2, Informative

    See Ring species - species boundaries are not as clear cut as your definition would have them, though that's a good rule of thumb.

    There are many arguments over how to define species - Morphological differences (which in practice is often the starting point), Biological differences, Shared ancestry etc.

  40. Re:reproduction by x2A · · Score: 2, Funny

    the noise you make when a heavy concept lands on your toe, especially when your feet are cold.

    --
    The revolution will not be televised... but it will have a page on Wikipedia
  41. Re:reproduction by x2A · · Score: 2, Insightful

    Not if they don't believe in evolution.

    --
    The revolution will not be televised... but it will have a page on Wikipedia
  42. Re:reproduction by x2A · · Score: 2, Informative

    virii

    Viruses. Virii would imply the latin word, which described a liquid like substance. As we know, liquid has quantity, not quantities, therefore is not pluralised (eg, four pints of water, or four water pints. We see the quantity is pluralised, not the substance).

    Understanding what viruses actually are came a long time after latin became a dead language, and so the pluralisation occured in our modern languages, while the pluralisation in latin continues to make no sense.

    --
    The revolution will not be televised... but it will have a page on Wikipedia
  43. Re:reproduction by Vampo · · Score: 3, Funny

    which of course brings us to the conclusion that mules are sometimes (rarely) alive

  44. Re:reproduction by DarkKnightRadick · · Score: 2, Funny

    so sex is a viral meme?

    --
    "There is a way that seems right to a man, but its end is the way of death." Proverbs 16:25 (NKJV)
  45. Re:reproduction by arcsine · · Score: 2, Interesting

    I've thought about this recently, too. It of course depends on how you define life. I think astrobiology is usually a good resource for definitions of this sort. If we found a virus on mars, would we say we discovered life? I think so. I like Carl Sagan's definition: "Living systems might then be defined as localized regions where there is a continuous increase in order." This is important to note, as the universe generally increases in entropy. At the center of all life we know is information. Information that replicates itself in some manner, as books are clearly not alive. So it would seem information (increase in order) and replication in some manner. So could a computer virus fit the definition? Conceivably.

  46. Re:reproduction by evolvearth · · Score: 2, Informative

    Don't all 'higher' animals begin life essentially as a parasite within the mother? Now granted, its the same species in this scenario, but it's still something to think about.

    A living individual animal only lasts for X amount of years. The level of importance is down to the gene, not really at the individual, but the individual will try to spread as much of its genes as it can to the next generation. This is a lot harder to do with females than with males, because females are typically stuck with the job of raising the kid, costing both resources and energy.

    The fetus under development is not a parasite, because the benefit of the host is to pass on its genes to yet another generation.

    What about fungi? They are considered organisms and alive, yet they grow as a parasite in or on a living host or other form of organic matter, and cannot grow or reproduce without said host. That's not too far off from how a virus reproduces. True, fungal reproduction does begin within the cells of the fungus itself, but the line really isn't as clear as many would think.

    We all need some kind of resources to survive, but we have replicating machinery that viruses do not. Fungi have this replicating machinery, and much of what is understood about the replication machinery in eukaryotes comes from the S. cerevisiae, a fungi. It doesn't matter if an organisms is living on a host to leech off of some of the host's resources such as nutrients. We all get our nutrients externally. Viruses can't even replicate without hijacking the machinery of another organism. That's really neat, but that doesn't quite make them alive.

    On that note, no life form truly reproduces autonomously; the chemicals that life is formed of are created/encoded from outside materials. Animals take in these outside materials by eating, plants draw them from the ground, fungi from the aforementioned host/organic matter.

    That said, It is true that when viruses replicate, the 'parent' virus does not take in material to reproduce (and rather, as mentioned, hijacks the host cells systems to do so). As important as that distinction may sound, I believe that when compared to how 'true' life forms reproduce, it seems mainly a question of semantics. It's a tough call, I guess all that can be said is that viruses certainly define the term 'gray area...'

    It's not really an issue of semantics if you consider how important it is for an organism to be able to replicate itself. It's one of the basic things of being alive, probably the most basic.