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  1. Re:Question to all you bioinformaticians on Build Your Own Scanning Tunneling Microscope · · Score: 1

    It's hard finding suitable conflat chambers and
    I wouldn't trust vibration isolation of a
    refurbished optical table so those parts
    most likely have to be new. That's 25K right
    there. If you got access to a lot of stainless
    steel tubing and are good with welding AND have
    a way to electropolish the chamber in the end,
    you can cut costs drastically but most people
    even at large universities don't have that.
    (BTW, I have first hand experience with old
    optical tables and their vibration characteristics).

    If you have big, no huge, lathes and mills you
    can make your own conflat flanges. If you have
    proper equipment you can ,ake your own bellows
    and feedthrus. Basically if you already have $300K
    worth of equipment, building a UHV appratus will
    cost you peanuts and a lot of time. Otherwse
    you will have a hard time scrounging many crucial
    parts. You can indeed get refurbed pumps cheap,
    maybe a manipulator if you are lucky. Certainly
    most electronics (it's very simple stuff and I
    have found ebay to be a good source though we
    only use such parts in few places where they dont
    really matter if they fail). Believe me, if you
    want a world-class STM, $100K in the US is a
    rather small estimate, unless you are an STM
    building company with a lot of equipment already
    in-house. 10^-6 is not gonna do it for most
    physics studies. Around middle 10^-9 you have
    a prayer of having a stable junction for a while.
    Look at the images from build-it-yourself sites:
    they all have tip changes, instabilities, and
    tell-tale artefacts at the edges of their images.
    You see that and any serious STM person will
    send you back for real data. I wouldn't even
    trust their images of gold steps if I hadn't
    known from many other sources they were there and
    they are supposed to look similar to what they
    see.

  2. Re:Question to all you bioinformaticians on Build Your Own Scanning Tunneling Microscope · · Score: 1

    This is gettig offtopic but...
    Building a UHV system (10^-10 torr type vacuum)
    is expensive though not hard. Part of it is that
    you'll need quality metal seal flanges to connect
    parts of your system, another part is that you
    need an ion pump because turbo and mechnical
    pumps introduce too much vibration. Of course
    if you got the money you could also dump it all
    inside a liquid helium dewar and be done with
    cryopumping alone.
    If you are scavenging equipment then look for
    a mechanical, a turbo and an ion pump (you'll be
    using them in that sequence), also find enough
    conflat hardware to do the task and you'll need
    some way to prepare metal surfaces at least, so
    find a good sputter gun. And also design and build
    a way to manipulate samples in vacuum, i.e.
    either a bunch of vacuum manipulators or UHV
    compatible motors. Also dont forget UHV vacuum
    gauges. In all, the systems I built usually cost
    about $300K-$500K and you can cut corners and make
    do with $200K. If you scavenge you can maybe go down
    to $100K.

  3. Re:It's a stupid license anyways on Build Your Own Scanning Tunneling Microscope · · Score: 1

    Dude, that's bogus. Go to a decent library and
    check out a book by Julian Chen "Introduction to Scanning Tunneling Microscopy"
    ASIN: 0195071506.
    It's the bible of STM. It will tell you more or
    less everything you need to know to build one
    except may electronics but it will give you
    plenty of pointers to that too.
    Most of the information on that site is either
    in the book or a design that can be made with info
    from the book rather trivially. They have done a
    fine job but their IP is not worth much even as
    a giveaway.

  4. Re:Vibration damping on Build Your Own Scanning Tunneling Microscope · · Score: 3, Interesting

    a. Please tell me you got an F for your efforts
    as an undergrad. I say this because the very
    essense of tunneling is that it falls of as an
    exponential, not as a power law.

    b. I assume you were doing STM in air or else
    moving a setup downstairs would have taken at
    least a week to rebake the vacuum chamber. Now
    in air, you have a thin layer of water on the
    surface which surprisingly makes it easier to
    stabilize a junction.

    c. Tips aren't quite some much of a problem, I
    agree with that, especially since very good tips
    can be bought commercially. And cutting a wire
    may work well for metals and semiconductors.
    Attaching a probe is usually easy because the
    only part you can't touch is the very end.

    Responding to original poster:

    d. There is no need to calibrate the piezo to be
    able to tunnel, that's what a feedback loop is for.
    You do have to have an idea of what parameters to
    use so it doesn't ring.

    e. In fact an ordinary op-amp will do fine and a
    clean dc supply from any decent manufacturer
    will do the trick. Look at bio and chemistry
    literature dealing with patch clamp applications
    for good references on more sophisticated designs
    but it aint rocket science. The one hard part is
    to make sure you put your setup far from any
    60 Hz source and have no ground loops or even
    no weak grounds anywhere in you setup.

    Lastly, the hard part about STM is getting
    meaningful data. You typically get junctions that
    aren't so good and you need to be able to tell
    whether it is the tip or the surface. Generally
    to do that you need to do this for a few years and
    build up and internal reference for which type
    of crappy junction corresponds to which problem.
    Then getting a good junction and some data becomes
    easier.

  5. Re:More STM info on Build Your Own Scanning Tunneling Microscope · · Score: 2, Interesting

    Beetle design, also known for its creator as the
    Besocke design is not unique in allowing full
    3D approach positioning. It does have many advantages
    like farly good rigidity, thermal compensation and
    ease of assembly.
    There are designs which are even better than
    slipstick, such as the good old inchworm design
    and its offshoots, especially ones designed for
    low temperature operation (some are patented).
    Even slip-stick isn't limited to beetles. Another
    design was patented early on by Lyding and is also
    thermally compensated, though harder to build than
    Besocke stuff.
    Bottom line, look around. There is no shortage of
    really cool designs to fit any need.

  6. Re:Question to all you bioinformaticians on Build Your Own Scanning Tunneling Microscope · · Score: 3, Informative

    I am probably quite qualified to answer your
    question seeing as I do STM research for a living.
    Your second question is easier to answer, so I'll
    do that first:
    there are two ways, either you put down enough
    of them to assure there will be a molecule in the
    range of your scanner whereever you approach
    or you use some other technique like lithography
    to make small structures then another technique
    to deposit your molecules near those structures
    then (if you got the microscope that allows it)
    position your tip optically near the structure
    and spend days on looking around with STM until
    you find it.

    Now you first question. STM can be used to find
    some structural info from large molecules. My lab
    has done some research on nanotubes and you can
    get atomic resolution on those and then determine
    their helicity. People have also imaged bio stuff
    and for some smaller molecules have seen the
    structure. Even DNA has been imaged. That said,
    STM is not a great structure probe, it is a great
    probe of electronic states.

    Last word of warning: people rarely realize that
    STM in air is not going to tell you anything
    that you can rely on physics-wise. The reason is
    that all surfaces exposed to air are covered in a
    thin layer of water which makes the interpretation
    of data hard. What they show on that page is a toy
    though well-thought-out and maybe even useful to
    some. Seeing atomic steps on gold and "atomic"
    resolution on HOPG is not hard, just don't hold
    your breath for something like atomic resolution
    on gold, or silicon, or anything else really.
    For that you at least need a UHV system.
    Cheers.

  7. Re:What utter nonsense on Cringely's 2004 Predictions · · Score: 1

    HomEostasis? Freudian slip?

  8. Re:And NASA wonders why their funding gets cut... on Stardust Apparently Successful · · Score: 1

    EU is a bit weak right now after Beagle but I am
    not sure whatcha talking about the Chinese. They
    just had a major success and look to be OK.

  9. Re:Nice effort, but . . . on Native KOffice for Mac OS X · · Score: 1

    I am guessing it will work the other way around.
    Mac people have a sense of good UI so they will
    drive this part of the app which will then be
    ported back to X11. At least that's the sensible
    way things should evolve and may be the strongest
    reason to port K?>*&):"(&^ stuff to the Mac.

  10. Daikatana on Eight Biggest Tech Flops Ever · · Score: 1

    A flop so monstrous, people even forgot about
    it when writing this article AND when writing /. comments to boot (AFAICT).

  11. Re:Maybe good if applied more widely on Californians To Vote On Largest DNA Database · · Score: 1

    And how do you propose we "ween ourselves from
    exploitative labor"? Oh, I know, how about getting
    rid of all illegal immigrants. Why, then there would
    be a labor shortage on the farms, wages would go up,
    people would get benefits, etc.
    You are advocating same thing buddy. And being very
    indignant about it to boot.

  12. Re:Weirdest... on Weird Presents Anyone? · · Score: 1

    And when you say smart you mean goodlooking, right?
    Gotta remember my Brittish.

  13. Maybe good if applied more widely on Californians To Vote On Largest DNA Database · · Score: 2

    I would think it a good thing if it were for all
    US citizens and legal aliens. If such a database
    were implemented the Feds could require, e.g. all
    supermarkets and food vendors in general to
    collect DNA and on the spot verify immigration
    status. This would make it nearly impossible for
    illegal immigrants to buy food, clothes, medicine,
    etc. You could also then investigate anyone
    buying food in bulk and see if they sell it on
    black market which would be sure to form. You
    could then really open a hunt for illegal
    immigrants and clean up US.

  14. Re:And for those SEC filings... on Linus Blasts SCO's Header Claims · · Score: 1

    Dunno about java servlets, but java applets were
    around seven years ago. So broadly speaking, web
    technologies were around seven years ago even by
    your metric.

  15. Polycom ViaVideo II on Are Videophones Ready for Prime Time? · · Score: 2, Insightful

    It is ~30 fps on LAN and it is useable, as in voice and video are coherent, picture is abit shaky but not painful. You can't move fast though
    or else it'll be a blur.
    However we use it to talk coast-to-coast. On
    university-to-university network you get ~20 fps
    and the quality degradation is notable. Now you
    get a picture that is a bit retarded and when
    someone moves (even medium speed) it results in
    unhappiness.
    Put the sucker on cable modem and you get 10 fps.
    Now it is virtually unusable in the sense that you
    are not getting much more than voice and what you
    do get is painfully choppy and often artefacted.
    IMHO, anything below 15 fps is not even worth
    consideration.

  16. Re:Merry Christmas, Darl! on SCO Ordered to Produce Evidence · · Score: 0

    Well now, SCO has shown itself to be a litiguous
    company and did things that make people VERY
    unhappy, like implying that would reopen the AT&T
    case. At this point the only assurance IBM would
    have of SCO shutting up for good is to drive them
    out of business. So it is unclear that IBM would
    settle the counterclaim. Besides, IBM is not the
    only company now with lawsuits against SCO. And
    some of these are in motion to set a precedent.
    But regardless, once the lawsuit vanishes so will
    the investors and so will SCO.

  17. Good question on What's Out There for Handheld Math? · · Score: 1

    In particular, is there any system for math
    handwriting recognition. Something which could
    interpret definite integrals, norms of matrices,
    and ideally more sophisticated things like
    group-theoretical and topological notations.

  18. Re:What is it about Moore's Law ... on Intel Researchers See Moore's Law Becoming Obsolete · · Score: 1

    Knowing when Moore's law will run out of steam
    is useful because this is the time when people
    will seriously consider better materials than
    silicon, this is when all this talk of better
    computing techniques (whether the simple
    tri-valued logic or quantum computing) will
    finally get the all out funding that better
    lithography tech now enjoys. I imagine that once
    you can no longer just turn the crank and push
    the process smaller, Intel will start to decline
    and streamlined instruction sets will become more
    important. Basically, once Moore's law is out
    we might be getting back to quality over quantity
    in chips. So Moore's law dying is something to
    look forward to if you are interested in cool
    but obscure technologies that are currently
    sidelined by silicon's immense scaling capacity.

  19. Sounds familiar on Kurzweil Gets A Patent For Poetic Software · · Score: 3, Informative

    I can't believe noone yet mentioned Stanislav
    Lem. One his more humorous stories dealt with
    a similar machine though one that could
    produce real poetry, meaningful, beautifully
    written and confroming to arbitrary constraints,
    like one where all words had to begin with same
    letter. If you read the story you know this
    invention will lead to no good.

  20. Re:Responsibility on Planned California Bill Targets Video Game Sales · · Score: 2, Funny

    Heh, I initially misread this as:
    The United BibleWrapped America.
    Works both ways.

  21. CDE???!!! on GUI Designer For Eclipse · · Score: 2, Funny

    Why is it built on top of that?

  22. Re:How is Matrix a train wreck? on First Review Of Return Of The King · · Score: 1

    On second thought, I just read the thread on the
    swedish grad student solving part of Hibert's
    problem 16 and I have to say: you are right about /. croud being loners. That was just sad.

  23. Re:How is Matrix a train wreck? on First Review Of Return Of The King · · Score: 2, Interesting

    Well, huh? Did we see the same movie? Romance?
    His GF dies in his hands and the guy just says
    "bye" and goes on to more ass-kicking... I was
    really expecting him to do the Romeo thing and
    maybe then have the machines fight Smith and when
    they'd both collapse leave humanity be. The scene
    where Trinity dies showed clearly that "romance"
    was merely a plot device to advance action.
    Of course, Keanu couldn't emote love even acting
    opposite his real GF, if he got one. The guy can
    express emotions (other than surprise) just about
    as well as a doorknob so I am not sure where you
    saw emotions in that movie. Maybe you have filled
    in the blanks because the script certainly calls
    for emotions but the final cut leaves a lot to be
    desired in that department.
    Action was fine, though everyone expected some
    imagination and this was basically a rehash of the
    first two movies. Zion was essentially a scaled up
    version of their ships. So yes this movie was
    packed with rather redundant action sequences.

    So to recap: the Matrix pretended to be a love story
    but needed a different cast to have a hope of
    pulling it off. It has predictable script (who
    doubted that the ship was gonna make it to Zion?),
    it has wooden acting, it has derivative action,
    and it has a nice ironic ending. This does not
    an *awesome* movie make.

  24. Re:The problem with a command line interface.. on Literacy: Natural Language vs. Code · · Score: 1

    Quite frankly, I think it is rare that one needs
    to change all words with one format to another
    type of format and there is so many words that it
    is hard to do by hand. In those cases, I think the
    most reasonable approach would be the one your
    company has taken: have a developer code up a way
    to do this, put a GUI button/icon/widget to trigger
    the automatic processing and train users about
    the capabilities of said widget. I cannot see
    your html cleanup being any more efficient if every
    users were to roll up their own utility.

  25. Re:The problem with a command line interface.. on Literacy: Natural Language vs. Code · · Score: 1

    Curiously, all your explicit examples are ones
    where you need a better gui. A command line
    interface will not help you sum data in a column
    of a spreadsheet faster or easier. We are not
    discussing the need to know how to use the tools
    and knowing which tool is better for the job, we
    are merely discussing whether a command line is
    the optimal tool for most "regular" tasks.