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Femtosecond Laser Shatters Viruses

wattrlz writes "In a development reminiscent of nineteenth century pseudo-science, the father-son team of Kong Thon and Shaw Wei Tsen recently demonstrated that the tobacco mosaic virus can be destroyed in vitro by nano-scale mechanical resonant vibrations induced by repeated ultra-short pulses from a laser. The total energy required is reportedly far below the threshold for human tissue damage and the technique should generalize to human pathogens. Cleaning stored blood is one obvious application."

154 comments

  1. TINY VIRUS SIZED WARNING by LiquidCoooled · · Score: 5, Funny

    Do not look into the femtosecond laser with your remaining Capsid.

    (and you thought I was gonna say eye...)

    --
    liqbase :: faster than paper
    1. Re:TINY VIRUS SIZED WARNING by Anonymous Coward · · Score: 0

      (and you thought I was gonna say eye...)

      Aye.

  2. I like this by ByOhTek · · Score: 0

    No more alcohol/iodine after a shot or when cleaning a wound.

    Err, except for bacteria. How about a dose of this and then a phage solution?

    --
    Self proclaimed typo king, and inventor of the bear destroying coffee table (patent not pending).
    1. Re:I like this by MicktheMech · · Score: 1

      I don't think they meant cleaning the wound. Rather, they'll do it to the blood after it's out of you.

    2. Re:I like this by ByOhTek · · Score: 1

      I didn't get that impression either, but it is a logical next step. I don't see why it couldn't be done effectively.

      --
      Self proclaimed typo king, and inventor of the bear destroying coffee table (patent not pending).
    3. Re:I like this by steveo777 · · Score: 1
      That is, until they install this right on your aorta. Powered by your very own heart, you'll nuke them little bastards during a workout.

      Of course... the idea that HIV/AIDS, and or any other STD could be destroyed upon contraction (or, perhaps slowed enough to not make difference) has astounding moral implications. People already lie about the STD's they carry now, but what happens when your guilt could be significantly reduced because, "She/He won't notice until I'm long gone. I guess that makes me a cynic.

      --
      This sig isn't original enough, it's time to come up with something witty...
  3. How would that work? by Whatsisname · · Score: 2, Interesting

    Considering that viruses are essentially bundles of proteins, and this laser trashes the virus, how would the laser not trash proteins in cells potentially containing the viruses?

    1. Re:How would that work? by andy314159pi · · Score: 3, Informative

      Considering that viruses are essentially bundles of proteins, and this laser trashes the virus, how would the laser not trash proteins in cells potentially containing the viruses?
      There is no possible frequency of light that could preferentially hit a virus and miss everything around it. For biomolecules and especially for whole conglomerations of biomolecules (say, a cell) you reach a saturation of states (or more correctly, pairs of states) across all frequencies (within a reasonable range.) In other words, conglomerations of biomolecules have spectra that are broad. So if the laser was going to be used to try and excite vibrational states in the virus and eventually cause dissociation and fragmentation, you would inevitably be doing the same to some of the material around it, again assuming that the virus was in a cell or surrounded by other biomolecules.
    2. Re:How would that work? by Anonymous Coward · · Score: 3, Interesting

      assuming that the virus was in a cell

      You've hit on one of the many problems with this approach.

      From listening to Dr. Tsen, it really does seem to work for free virions floating in solution - but once they unpackage themselves and infect a cell, it does nothing.

      You do make me wonder if this isn't doing more harm to cells than Dr. Tsen is aware of (which, given his utter lack of biology background would not surprise me). This could easily disrupt ribosomes, or possibly nucleosomes and similarly sized structures without causing cell death (but still doing significant harm).

      The alternative is to assume that they're actually tuning this to target particles of a certain size range - which would make it even more useless for general applications because there is so much diversity in terms of virion size.

    3. Re:How would that work? by ILongForDarkness · · Score: 1

      I'd question if this technique would be useful in a real organism in that you'd have a bunch of absorbion, and scatter that would spread your lasers frequency out just enough that you wouldn't get the resonance you want. However, assuming that could be looked after, you should be fine. When you target you look for very unique spots in the structure of the virus. Resonance frequencies shift ever so slightly, when say a part of the protein has a particular combination of amino acids, in a particular protein structure, and loosely bound to an iron atom say. Very unlikely that the same structure would appear elsewhere, so you should be fine inducing resonance at that frequency.

    4. Re:How would that work? by davidsyes · · Score: 1

      You'll have to have special security clearance and ask Dr. Rudy Wells about these new Fembots...

      --
      Previously: "Linux... Toward the Sunrise..." Now: "Linux... Toward the-- No, now, part of Every Sunrise"
  4. Heard being played in the lab by Billosaur · · Score: 1

    You Shook Me All Night Long

    Good Vibrations

    Shake, Rattle, and Roll

    All Shook Up

    --
    GetOuttaMySpace - The Anti-Social Network
    1. Re:Heard being played in the lab by hitmark · · Score: 1

      you know your a nes kid when you read the third one as snake, rattle, and roll :P

      --
      comment first, facts later. http://chem.tufts.edu/AnswersInScience/RelativityofWrong.htm
  5. Delivery mechanism? by notnAP · · Score: 4, Funny

    Assuming the technique also leaves shark tissue undamaged, I got the perfect delivery mechanism in mind.

    1. Re:Delivery mechanism? by lonesome_coder · · Score: 0

      It will cost you, though....ONE MILLION DOLLARS.

      --
      If you'd just do what we tell you and quit yer gripin' everything would be chocolate sprinkles and rainbows! -AC
    2. Re:Delivery mechanism? by PHAEDRU5 · · Score: 1

      What, ill-tempered mutated sea bass? I mean, you don't want the environmentalists after you.

      --
      668: Neighbour of the Beast
    3. Re:Delivery mechanism? by Anonymous Coward · · Score: 0

      But will it work equally well with Sea Bass?

    4. Re:Delivery mechanism? by gijoel · · Score: 1

      You're in luck. It just so happens that I've just perfected the shrink ray that I was working on.

  6. looks up at ceiling, Koooooooooong! by jollyreaper · · Score: 4, Funny

    Kong Thon? There's a man waiting for a video game event to be named after him.

    --
    Kwisatz Haderach
    Sell the spice to CHOAM
    This Mahdi took Shaddam's Throne
    1. Re:looks up at ceiling, Koooooooooong! by E++99 · · Score: 1

      Or a porno flick.

    2. Re:looks up at ceiling, Koooooooooong! by maharvey · · Score: 1

      I keep wanting to say Kong Thong

    3. Re:looks up at ceiling, Koooooooooong! by Anonymous Coward · · Score: 0

      At least it's not Kong Thong. It would suck to be waiting for a giant monkey--ahem, I mean ape--to sit on him, not to mention the dismal outlook of being party to a generally ineffective wedgie. As if being stuck between the giant, hairy ass crack of an enormosu gorilla wasn't bad enough as it were.

    4. Re:looks up at ceiling, Koooooooooong! by pluther · · Score: 1

      I keep wanting to say Kong Thong

      Sexy underwear for the morbidly obese?

      --
      If the masses can keep you down, you're not the Ubermensch.
  7. 19th Century Psuedo Science? by dtolman · · Score: 1

    where the hell did that come from? Did 19th century psuedo scientists use 21st century lasers to destroy entities (virus's) that were discovered in the 20th century?

    1. Re:19th Century Psuedo Science? by Otter · · Score: 1

      Commenters at Wired mention Royal Rife, whose career was in the 20th century but otherwise seems to be who the submitter had in mind.

  8. Cells may be safe, but what about their contents? by hcdejong · · Score: 3, Interesting

    DNA, for example, would be closer to the size of a virus. You could end up with an intact cell wall containing nothing but debris.

  9. What is the threshold for by zappepcs · · Score: 1

    human DNA damage? If this can affect a virus, it can affect the host organism. The only question is how much it would affect a human, and over what time period the effect will be seen.

    1. Re:What is the threshold for by PhoenixFlare · · Score: 1

      If you read the article, you'll see that the laser is tuned specifically to a frequency that vibrates the protein shell on the virus.

      I could be completely wrong in my interpretation, but it sounds like that would make it pretty easy to avoid targeting stuff like DNA and healthy cells.

    2. Re:What is the threshold for by bossesjoe · · Score: 3, Informative

      Blood cell's don't have nuclei, so no DNA.

      --
      There is no replacement for displacement.
    3. Re:What is the threshold for by eheldreth · · Score: 1

      I may be totally off base but I think it would depend on the virus. I would imagine some viruses would resonate much closer to the sympathetic frequency of human DNA than others. That's assuming they don't all resonate at the same frequency which I just can't believe would be the case.

      --
      The perversity of the Universe tends towards a maximum. - O'Toole's Corollary
    4. Re:What is the threshold for by Anonymous Coward · · Score: 0

      You're thinking of red blood cells. Other blood cells, like white blood cells, still have nuclei.

  10. When I first looked at this by apdyck · · Score: 1

    I must admit, when I first read the headline on this one I was baffled - I had no idea what it was. However, after reading the article, I have come to understand just what this means for the medical community. The article talks about using lasers to destroy harmful, and previously incurable, diseases from stored blood in our blood banks, including HIV. This is a tremendous step forward for the scientific and medical communities. Of course, they still have to test it, since it has only been used in a test-tube environment. In addition, I expect the drug companies to attempt to suppress this, as it takes away from their ability to market drugs to the afflicted.

    One can only hope that this discovery is given all the attention it deserves. It is even more impressive that the inventors did not come up with the concept in a laboratory, but outside having a discussion about the need for more effective treatments than vaccines for viruses. Way to go, guys!

    --
    .sig
  11. Hmm? Applicable to AIDS? by BadAnalogyGuy · · Score: 1

    I wonder how effective this could be in preventing the spread of AIDS in discos and Apple Computer expos where lasers are used all the time as pulsating visual cues matched to the throbbing bass beat of heavy house and Hi-NRG techno.

    On a more serious note, I remember that it was once mentioned in some Star Trek episode that the transporters performed a full scan for pathogens of all "beamed" people and items. This sounds almost like that, except for the actual transportation of particles from one place to another.

    1. Re:Hmm? Applicable to AIDS? by Tony+Hoyle · · Score: 1

      Is there a big problem with the spread of AIDS at Apple Computer Expos then? I wasn't aware of this.. I'll stay away from them.

  12. I have a more important usage question.... by CodeShark · · Score: 4, Interesting

    Can this be tuned --or perhaps tuned with the assistance of another chemical marker-- to act as a "hunter killer" for auto-immune activated diseases such as multiple sclerosis, lupus, etc. where the resonant pulses would only kill the erroneously activated white blood cells and not the non-reactive white blood cells?

    Because if so this becomes in effect a computerized vaccine against a wide variety of ailments that have no other good medicinal choices. And because computing power is still rising exponentially faster than just about any other form of tech, this could be a whole lot quicker to market.

    --
    ...Open Source isn't the only answer -- but it's almost always a better value than the alternatives...
    1. Re:I have a more important usage question.... by theelectron · · Score: 2, Interesting

      Doubtful. They basically tune the pulse frequency to the resonant frequency of the virus's protein shell to break it. So it really needs to be tuned to a specific frequency to kill a specific thing. I would think white blood cells, activated or not, are too similar to be differentiated this way. Though I am no biologist, so correct if I am wrong - and I hope I am wrong because this would be an amazing breakthrough not just in autoimmune diseases but also cancer.

    2. Re:I have a more important usage question.... by GammaKitsune · · Score: 1

      I wouldn't worry too much about lupus. It's never lupus.

      --
      Gamertag: WyleType
    3. Re:I have a more important usage question.... by Anonymous Coward · · Score: 0

      It's not lupus!

    4. Re:I have a more important usage question.... by jellomizer · · Score: 1

      Ha Ha... Fight Lupus

      --
      If something is so important that you feel the need to post it on the internet... It probably isn't that important.
  13. cleaning stored blood? by OglinTatas · · Score: 2, Funny

    What? I don't think even the heaviest chain-smoker gets infected with tobacco mosaic virus. I'm sorry, I just don't see the "obviousness" of this application.

    1. Re:cleaning stored blood? by Smordnys+s'regrepsA · · Score: 3, Funny

      I know, this is almost as bad as that quack who wanted us to eat moldy bread!

      --
      Just -1, Troll talking to another.
    2. Re:cleaning stored blood? by Anonymous Coward · · Score: 1, Funny

      Sure, Ogg, I can see that your "fire" roasted the mouse. It even tastes good. But how often do we actually eat mice, anyway? Now, if this fire thing worked on mammoths, that might be interesting.

      I'm sorry, I just don't see the point of this mouse application.

    3. Re:cleaning stored blood? by greyhueofdoubt · · Score: 2, Informative

      Tobacco mosaic virus is used experimentally because so much is known about it. Think of it as the white lab rat of virus research.

      -b

      --
      No offense, but I've stopped responding to AC's.
  14. Also being played in the lab by digitaldc · · Score: 4, Funny

    Shattered

    Destroyer

    The Safety Dance

    She Blinded Me With Science

    --
    He who knows best knows how little he knows. - Thomas Jefferson
    1. Re:Also being played in the lab by thrillseeker · · Score: 1

      Blinded by the Light

    2. Re:Also being played in the lab by somersault · · Score: 1

      Don't forget the Imperial March.

      "Sire, we have located the rebel virii deep in the groinal system"

      "Excellent. Now they can witness the power of this fully armed and fully operational femptolaser!"

      --
      which is totally what she said
  15. RTFA by p3d0 · · Score: 4, Informative

    The virus-deactivating laser works on a principle called forced resonance. The scientists tune the laser to the same frequency the virus vibrates on. Then they crank up the volume. Like a high-pitched sound shattering glass, the laser vibrates the virus until it breaks.
    --
    Patrick Doyle
    I mod down every jackass who puts his moderation policy in his sig. Oh, wait a sec....
    1. Re:RTFA by BadAnalogyGuy · · Score: 1

      There was a Batman TV series episode where the bad guy was using sub/supersonic tones to resonate with various objects to destroy them. The plotline was that he was threatening to destroy whole buildings with his sonic blaster, and only Batman could save Gotham, but Batman himself was susceptible to the sonic blaster! Tune in next week, true believers!

      This is also like the soprano opera singer who shatters glass with her voice. Only with lasers.

    2. Re:RTFA by SolitaryMan · · Score: 2, Funny

      Your nickname is kinda apt now :)

      --
      May Peace Prevail On Earth
    3. Re:RTFA by somersault · · Score: 1

      You're at least the 3rd person I've seen say that. The funny thing is that I never read his username until after it gets pointed out.. he must do it on purpose anyway

      --
      which is totally what she said
    4. Re:RTFA by Goatbag · · Score: 1
      Resonance frequencies, eh?

      They must watch a lot of Next Gen.

    5. Re:RTFA by Anonymous Coward · · Score: 0

      So they're not going after viruses that have already infected cells.

      So it might work for packed RBCs and plasma but not whole blood.

      Even given that, I'm still very skeptical about being able to engineer this into something that can be used effectively on a large scale, but maybe this isn't quite as bad as I thought.

    6. Re:RTFA by antifoidulus · · Score: 1

      So they make the virus dance to death? Couldn't they just give it some ectasy and techno instead? Same effect in the end.

    7. Re:RTFA by magisterx · · Score: 1

      I feel compelled to point out that it is Stan Lee, one of the founders of Marvel Comics, that always used the phrase "true believers" and that Batman is a DC character.

  16. Wow, that's a relief! by howard_coward · · Score: 1

    Next time I get infected with TMV, I'll run right over to the laser lab.

  17. Danger of re-self-assembly and evolution? by G4from128k · · Score: 4, Insightful

    First, This will only work if the resonance breaks the bonds inside the proteins that create the subunits that self-assemble into the viral capsids. If the resonance only separates the weakly-bound subunits, then the resulting fragments will tend to re-self-assemble into whole viruses again. To use a bricks and mortar analogy -- if the device only breaks the mortar, the bricks can reused. The trick is to break the bricks.

    Second, this solution requires a specific pulse frequency for each virus. It's not a broad-spectrum disinfectant. That suggests that viruses can easily evolve to defeat the device. Mutants that add a few non-functional amino acids to their capsid protein chains or that decorate the capsid surface with different biochemical groups would change the resonant frequency and allow mutants to escape and breed. One can even imagine evolution selecting for viruses that have inherent damping so that no resonant frequency can build enough energy to disrupt the shell. For example, a virus might become effectively heterozygous so that its shell is randomly constructed of two slightly different subunit sequences. A capsid that is not perfectly crystalline would lack a strong resonant frequency and escape disruption.

    Overall, this looks like a very promising weapon in the on-going arms race against viruses.

    --
    Two wrongs don't make a right, but three lefts do.
    1. Re:Danger of re-self-assembly and evolution? by pla · · Score: 1

      One can even imagine evolution selecting for viruses that have inherent damping so that no resonant frequency can build enough energy to disrupt the shell.

      And we could call it "Viruses to destroy record players by". Oops, I mean sharks.

    2. Re:Danger of re-self-assembly and evolution? by rrkap · · Score: 1

      Second, this solution requires a specific pulse frequency for each virus. It's not a broad-spectrum disinfectant. That suggests that viruses can easily evolve to defeat the device. Mutants that add a few non-functional amino acids to their capsid protein chains or that decorate the capsid surface with different biochemical groups would change the resonant frequency and allow mutants to escape and breed.

      I had the same thought at first. However then I realized that we're really only worried about a few viruses (very few viruses are both common and deadly) and it would probably take some time for this evolution to happen (it took 30 years for antibiotic resistance to become common in bacteria). In the mean time, this might provide a nice weapon against disease which will hopefully work long enough for us to invent something better. It is an arms race and we shouldn't let the inevitable improvement on the part of the viruses dissuade us from creating a new tool that might let us gain a temporary victory.

      --
      I like my beverages with warning labels!
    3. Re:Danger of re-self-assembly and evolution? by Greyfox · · Score: 4, Funny

      So just put the frequencies that kill different viruses into a file and just have the laser cycle through them. The evolution problem could be solved by regularly updating your antivirus files. Naturally most people won't do this and will end up compelled to send junk mail to people...

      --

      I'm trying to teach myself to set people on fire with my mind... Is it hot in here?

    4. Re:Danger of re-self-assembly and evolution? by Tony+Hoyle · · Score: 1

      Remember folks, keep your AV updated!

    5. Re:Danger of re-self-assembly and evolution? by E++99 · · Score: 1

      First, This will only work if the resonance breaks the bonds inside the proteins that create the subunits that self-assemble into the viral capsids. If the resonance only separates the weakly-bound subunits, then the resulting fragments will tend to re-self-assemble into whole viruses again. To use a bricks and mortar analogy -- if the device only breaks the mortar, the bricks can reused. The trick is to break the bricks.

      It sounds like it probably only breaks apart the subunits. However, once the virus is essentially disassembled, assuming this is done with viruses free in the blood, I would think the immune system would clean up the parts long before they could reassemble.

      Second, this solution requires a specific pulse frequency for each virus. It's not a broad-spectrum disinfectant. That suggests that viruses can easily evolve to defeat the device. Mutants that add a few non-functional amino acids to their capsid protein chains or that decorate the capsid surface with different biochemical groups would change the resonant frequency and allow mutants to escape and breed. One can even imagine evolution selecting for viruses that have inherent damping so that no resonant frequency can build enough energy to disrupt the shell. For example, a virus might become effectively heterozygous so that its shell is randomly constructed of two slightly different subunit sequences. A capsid that is not perfectly crystalline would lack a strong resonant frequency and escape disruption.

      This may be true. However, I don't see what would stop them from transmitting many frequencies across the full spectrum that incorporates virus-sized objects simultaneously. I wonder how exact the frequency has to be to work.
    6. Re:Danger of re-self-assembly and evolution? by digitalderbs · · Score: 4, Interesting

      A laser that disrupted covalent bonds in proteins would most certainly be detrimental to human cells too. There's nothing special about the covalent bonds of virus proteins over human proteins. What is special is the tertiary structure packing of coat proteins. I'm also not convinced that the process will be completely reversible as you suggest. Monomer coat protein could very easily dilute into very low concentrations once the virus is disassembled by destabilizing the complexed state (i.e. the intact virus). Nonetheless, I have concerns too. I would think that tissue penetration of the radiation would be quite poor. Tissue is more invisible to X-rays than lower frequency radiation. Presumably, this method uses lower frequency radiation -- I couldn't see it mentioned in the story. These pulses may break viruses down in solution, but getting it to deep tissue is another matter entirely.

    7. Re:Danger of re-self-assembly and evolution? by geekoid · · Score: 1

      Actually, the trick is to make the brick no longer accept mortar.

      --
      The Kruger Dunning explains most post on /. http://en.wikipedia.org/wiki/Dunning%E2%80%93Kruger_effect
    8. Re:Danger of re-self-assembly and evolution? by dfay · · Score: 1

      Getting to deep tissue may not be a big problem. Aren't most virii found in the bloodstream? If so, and if this works out, couldn't you hook a patient to a dialysis-like machine where the blood leaves the body, is treated, and is readmitted? Then the patient sits around for an hour and bingo, no more AIDS.

      Of course, I'm just a computer guy, we'd need an appropriate expert to say whether or not that's practical. And the laser treatment may not pan out anyway, but it sounds very cool.

  18. Re:Cells may be safe, but what about their content by nwmann · · Score: 1, Informative

    it shatters the protein shell, not the actual rna of the virus. and these protein shells resonate at different frequencies than that of a regular cell.

  19. You've never heard of, "Dr. Royal Rife" ? by wattrlz · · Score: 3, Informative
    Some dr at the turn of the last century said that he could destroy all pathogens with a, "beam device" tuned to their, "mortal oscillatory rates" or some such. Very simillar claim. He also said he could see virii under his microscope.
    • http://www.rife.org
    • http://en.wikipedia.org/wiki/Royal_Rife
    1. Re:You've never heard of, "Dr. Royal Rife" ? by planetralph · · Score: 1

      In the later part of Rife's career, Medical researchers thought they had pretty much beat communicable diseases with vaccines and antibiotics. I wouldn't be completely surprised if Rife was on to something but couldn't get funding or positive attention because vaccines and antibiotics were so successful and considered to be "the" answer. The article about Rife in Wikipedia doesn't sound like what I think of when I hear "18th century Pseudoscience".

    2. Re:You've never heard of, "Dr. Royal Rife" ? by SailorSpork · · Score: 0

      Oh, that's what it meant? I was thinking more along the lines of a logical extension Fantastic Voyage... Man, I loved that movie when I was a kid!

    3. Re:You've never heard of, "Dr. Royal Rife" ? by geekoid · · Score: 1

      More likely, we have some psuedoscience and years later someone comes up with something similar to it, so in hindsight people think 'they were onto something'.

      Or he had a similiar odea, but no science to back it up. Forexample: Maybe he heard of an opera singer cracking a glass and thought 'Hey, we should be able to do that to viruses'. Of course no way to study it, no science to back it, tend to make it a psuedoscience.

      He invented a microscope which seem to work on magic, since no one has been able to get the results he claimed.
      Also, he claimed to created a beam the cured a particular cancer. Non repeatable.

      He is also associated with this(through no fault of his own)
      http://www.rifehealth.com/

      --
      The Kruger Dunning explains most post on /. http://en.wikipedia.org/wiki/Dunning%E2%80%93Kruger_effect
    4. Re:You've never heard of, "Dr. Royal Rife" ? by Grishnakh · · Score: 1

      He invented a microscope which seem to work on magic, since no one has been able to get the results he claimed.
      Also, he claimed to created a beam the cured a particular cancer. Non repeatable.


      I thought the "beam" had something to do with his microscope. The "Rife machines" (which are still sold today) are basically just electrical function generators, which you tune to a specific frequency which supposedly will destroy a particular pathogen, and then hold a couple of electrodes in your hands connected to the output of this machine.

  20. Really interesting approach. by rrkap · · Score: 1

    This approach is a really clever way of eliminating specific viruses from a specific tissue or fluid. It's a shame that it would be darn hard to apply to an entire organism (to, for example, cure a viral infection) because you would have to illuminate the whole organism with the laser. It also has limited application in cleaning blood because it has to be tuned for a specific virus (i.e. AIDS) and would have run multiple times to remove others.

    This being said, I wonder if there's value in killing off (say) all the copies of a virus in someone's blood (even if some remains in other tissues). Also, it seems that this should be adaptable to bacterial infections because bacterial DNA is pretty different than human DNA. If this is the case, it might be a useful treatment approach for sepsis.

    --
    I like my beverages with warning labels!
    1. Re:Really interesting approach. by Rob+Simpson · · Score: 1

      Yeah, it'd be interesting to see if some sort of dialysis-like device would be useful in some chronic viral diseases like AIDS... I guess it would depend on how long the viral particle stays viable in the blood, at what rate it is being replaced by infected cells, etc.

    2. Re:Really interesting approach. by Stephen+Ma · · Score: 1
      It also has limited application in cleaning blood because it has to be tuned for a specific virus (i.e. AIDS) and would have run multiple times to remove others.

      You could pump the blood through several lasers in series; the lasers would be tuned to different frequencies. With this setup, the blood would be zapped many different ways but would make only one pass through the purifier. The process should be reasonably quick.

  21. Time? by Seakip18 · · Score: 1

    While the details aren't great in TFA, I can imagine dialysis-like machines getting setup to treat patients. What the article didn't really hit on was the total capacity the laser could handle and if it's even feasible. After all, it's not worth waiting days for blood to get cleaned while the virus has had time to spread/repopulate the body with the other blood.

    --
    import system.cool.Sig;
  22. Greatly exaggerated by Anonymous Coward · · Score: 5, Interesting

    This is (more or less) just some people who do a lot of Raman scattering deciding to try their technique to analyze virus particles and then noticing that some of them were damaged in the process. All of the other stuff (in particular the HIV) is largely BS - a few physicists who know almost nothing about biology going after NIH money by putting the magic "HIV" buzzword into their grant applications.

    The slightly cool thing about it is that you can target particles below a certain size (like viruses) without causing much damage to larger particles (like host cells).

    In terms of actually engineering this into a system for filtering blood (one of the main applications they envision), there are enough problems that it has no hope of succeeding in practice. Even if you could actually overcome all of those and build a system that could use this technique to destroy all of the virus particles in blood on a practical scale, many viruses that could contaminate whole blood (including HIV) will have uncoated and set up shop in the white cells, which would go on to release new virus after the treatment so this would offer no protection at all.

    For the same reason, you couldn't use this as a treatment even if you could somehow expose every cell in a patient to these pulses (which would be impossible unless you cut them into paper-thin slices).

    If the Tsens are actually unaware of this, then that alone should raise a huge red flag because anyone with the slightest bit of background in virology would know this.

    About the only thing this *might* be good for (other than generating press and bilking naive investors out of their money) is as a laboratory technique for killing all of the free virus in a very small sample without harming the cells.

    As a scientist, this kind of thing makes me sick, and it illustrates some of the harm caused by profit-motivated research in university settings (in particular, things Arizona State University's Biodesign Institute).

    It's great when science and discovery naturally leads to practical (and profitable) products, but this kind of thing is what happens when people put the goal of making money ahead of actually doing real science.

    1. Re:Greatly exaggerated by quixote9 · · Score: 3, Informative

      Have to agree with this particular AnonCoward. It makes no sense to this biologist either.

      Viral, bacterial, or any other genetic material is too similar to the host's when you're talking about mechanical disruption. There's no way to destroy one and not the other.

      What's unique about viruses in this context is their coat (capsid) which has a very precise structure. It's different enough from anything else and I could imagine it shattering and nothing else being damaged. If this was somehow (as people have pointed out, that would require magic!) being done in a live person, the immune system would attack the broken particles. Hopefully, it would get them all. If not ... see next ....

      If it was happening in blood filtration, I'd think you'd have to figure out some way of removing the bits and pieces. Virus particles do self-assemble. And evolution being what it is, this would be a good way of selecting for viruses that are particularly good at self-assembling.

      That would be a Bad Thing.

    2. Re:Greatly exaggerated by AngelofDeath-02 · · Score: 1

      I agree with you completely, however there is one applicable use that I can think of.
      Cleaning donated blood.

      This exists outside of the human body and is a vector for infection, even with our current processes of testing and then destroying what we believe to be contaminated blood.

      --
      No, I am not an English major. My posts are subject to typos and incorrect grammar. Do not expect perfection.
    3. Re:Greatly exaggerated by Torque · · Score: 1

      It's important to remember, though, that when big basic discoveries are made, it's almost impossible to understand their implications and outcomes. When nuclear magnetic resonance was discovered, the folks who worked on the project were asked "So, what are the practical uses of this effect?" Their answer? Something to the effect of "Well, we think it might help in measurement of very small magnetic fields--so we could study how the earth's magnetic field is shifting, and that might be important."

      Of course, NMR is the effect that enabled MRI, one of the most useful diagnostic tools of the last 20 years.

      The moral of the story? Don't let speculation about what the discovery might be good for make you sick. Use it as an opportunity to think even bigger about what new frontiers opening up might conceivably mean.

    4. Re:Greatly exaggerated by Anonymous Coward · · Score: 0

      HIV is not a "buzzword". I believe you meant to say something along the lines of "fad". As another scientist, I'm dismayed by your inability to start off such a simple article without errors.

    5. Re:Greatly exaggerated by Anonymous Coward · · Score: 0

      Don't let speculation about what the discovery might be good for make you sick

      It's not the speculation that makes me sick.

      It's taking that speculation to an extreme, packing and selling the vapor as if it were a finished product.

  23. DNA by TargetBoy · · Score: 1

    Wonder if this could be tuned to effect DNA or portions of DNA...

    Could this be potentially used to kill?

    1. Re:DNA by stranger_to_himself · · Score: 1

      That's basically what radiotherapy is, AFAIK. Radiation to damage DNA of cancer cells. It's not great for patients either.

  24. Nobel? by thatskinnyguy · · Score: 1

    If this thing eventually leads to cures for HIV and Hepatitis and other nasty viruses, I smell a Nobel Prize for these gentlemen. With corporate sponsorship and help from world governments, AIDS could be eradicated across the globe and improve the quality of life for hundreds of millions of people.

    --
    The game.
    1. Re:Nobel? by Anonymous Coward · · Score: 0

      Thank you, Captain Obvious.

  25. Re:Cells may be safe, but what about their content by Setti45 · · Score: 2, Funny

    Being as they are using the resonant frequency to destroy the virus, I imagine the differences in the mechanical structures between viruses and other surrounding material would isolate the applied force to the virus. Disclaimer: This is no where near my field of study.

  26. Radiometry Questions by kilo_foxtrot84 · · Score: 1

    After reading the article, I'd like to see the actual papers they've written on this. A quick peek at a related link suggests that the viruses are in water, or within cells in the water. I want to know what happens when you get multiple media interfaces involved, such as within the body, and the degree to which these boundaries will cause a loss in wave "volume" (does Wired mean amplitude?).
     
    My guess is that the experiment involved a very shallow field of activity. The technique as it stands now would be nifty for sterilization, but I'd imagine that to be effective for human viral treatments you'd need a laser wavelength capable of penetrating human membranes at least to the depth of bone marrow. Somebody correct me or back me up on this, please: if we're dealing with EM radiation of a low enough energy, aren't these guys in the domain of short bursts of directed radio waves? If so, then I guess that answers a few of my questions.

  27. The Safety Dance by TheSciBoy · · Score: 2, Funny

    The list begins and ends with "Safety Dance". Why would you need any other music?! (sings)"Everybody pull up your pants..."

    --
    Badgers, we don't need no stinking badgers! - UHF
    1. Re:The Safety Dance by Xiaran · · Score: 3, Funny

      Y'know, that dance wasn't as safe as they said it was.

  28. there's a lot of machinery in the cell by circletimessquare · · Score: 1

    i'm certain they can tune a laser to the right frequency and shatter a virus like an opera singer and a crystal glass

    what i am also certain of is the fact that a lot of other proteins in the cell probably have the same frequency. some of those proteins might not be so important, some might

    if that opera singer went into a lamp store and sang to shatter only the particular crystal chandelier in front of her, no one would be surprised if another chandelier towards the back of the store cracked too

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
    1. Re:there's a lot of machinery in the cell by PolyDwarf · · Score: 1


      what i am also certain of is the fact that a lot of other proteins in the cell probably have the same frequency.


      I'm skeptical too.. but, come on. At least try and provide some basis for your assertions.

  29. RTFA by p3d0 · · Score: 2, Informative

    From listening to Dr. Tsen, it really does seem to work for free virions floating in solution - but once they unpackage themselves and infect a cell, it does nothing.

    From the article:

    Tsen says the technology could provide immediate benefits for clearing viruses in blood stored in blood banks. So they're not going after viruses that have already infected cells.
    --
    Patrick Doyle
    I mod down every jackass who puts his moderation policy in his sig. Oh, wait a sec....
  30. Unapplicable by Mutatis+Mutandis · · Score: 4, Informative

    A nice idea. I must be one of the rather few people who have worked with ultrashort pulsed lasers, Raman scattering, and viruses; and I really appreciate the interest of the concept. But I doubt very much that it will ever be a practical tool. Destroying M13 virus in pure water is a far cry from a real application.

    If I understand it correctly, the technique exploits the fact that ultrashort laser pulses are not monochromatic but have a significant band width, to excite a vibrational frequency of the virus through resonant Raman excitation. Or, the vibrational mode of the viral capsid is about 8 cm^-1, and the excitation laser contains both 23,529 cm^-1 (i.e. 425 nm) and 23,521 cm^-1 (the Stokes-shifted matching frequency). If you excite the vibrations of the capsid hard enough it will break, as in the old trick of the singer breaking a glass.

    But actually, a 100 fs laser pulse has a rather broad spectrum, and therefore is going to excite much more than just that single vibrational mode. Effect on viruses is claimed at a peak power of 50 MW/cm2 -- that is megawatt per square centimeter -- which is rather respectable, even if the average power is low. So I fear that this technique is not going to be very selective. I suppose that in theory you could also excite the virus with two longer-pulse (i.e. picosecond) lasers tuned to have a specific frequency difference, but then the average power required to get a threshold peak power of 50MW/cm2 is likely to be a problem.

    Of course, if you are going to use this on a virus like HIV, you will need to target the immature form (which has a shell of gag protein under the envelope) and the mature form (in which gag has been processed into matrix and capsid). You also need to cope with the irregular structure of the virus, which does not have the icosahedral symmetry of many other viruses, its considerable genetic variability, and its variable morphology. HIV capsids occurs in at least two forms, cone-shaped (most of them) and tubular (less frequent). So its Raman frequency spectrum is likely to be complex and a broadband killer may be what you want -- may be.

    The reported excitation is a frequency-doubled pulsed beam at 425 nm, which is violet. Blood strongly absorbs light at such wavelengths; hemoglobin even has an absorption peak there. You would have to tune to the red to do anything useful in blood without killing the blood cells, but a standard frequency-doubled titanium-sapphire laser will really struggle to generate red light -- a yellow-tinged green at 550 nm is about the limit. A different laser technology or a much more complex system (with a parametric oscillator) would be required to get there. And even a red laser might be absorbed enough to make blood boil in the focus of the beam.

    Last but not least, even if your could destroy all viral particles in a blood sample, that would by no means make that blood safe! The raison d'etre of viruses is inserting their genome into cells to be replicated there. Destroy all viral particles, and there might still be viral genomes in the cells, as RNA or DNA, ready to replicate in the host; even viral proteins ready for assembly into new viruses. It would still be unacceptably dangerous to use that blood.

    Frankly, I think this is a misuse of the technology. If it has any applications at all that will be in the study and detection of viruses, not in decontamination. It might be developed into a simpler, cheaper alternative to CARS microscopy.

    1. Re:Unapplicable by smenor · · Score: 1

      This sounded kinda cool when I first heard about it... but it also kinda pegged my bullshit detector.

      It's interesting to hear from someone who actually knows about this stuff.

    2. Re:Unapplicable by lukesl · · Score: 1

      I agree with what you're saying, and I'd like to add that when you give a person blood, you're really giving them packed red blood cells, which are already "dead," as in they're enucleated cells not actively making new proteins or anything. So you don't need any kind of absolute specificity--it's not like "killing" the blood cells makes them somehow ineffective, so you could probably just gamma-irradiate the blood. I know that's already done under certain circumstances.

  31. Quite... by denzacar · · Score: 1

    We of the Giant Purple People Eater Society (GPPES) find cleaning stored humans a much more obvious application.

    --
    Mit der Dummheit kämpfen Götter selbst vergebens
  32. i read the fucking article, it is crap! by someone1234 · · Score: 2, Insightful

    "This technique will be very useful to disinfect all the viruses, known or unknown," Tsen said. "This will make blood transfusion very safe."

    Do you see the BS? They say here: UNKNOWN. Lets suppose, you can calibrate the laser against a known virus without harming human cells/tissue/whatever. How do you calibrate this magic laser to several unknown viruses at the same time?

    --
    Patents Drive Free Software as Hurricanes Drive Construction Industry
    1. Re:i read the fucking article, it is crap! by p3d0 · · Score: 1

      Yep, that's pretty hard to explain, unless they have some reason to think a lot of viruses will resonate at the same frequencies.

      --
      Patrick Doyle
      I mod down every jackass who puts his moderation policy in his sig. Oh, wait a sec....
    2. Re:i read the fucking article, it is crap! by X0563511 · · Score: 2, Informative

      ramp up the scale, skipping frequencies that would trash the blood.

      --
      For large sets, this will be our guide even unto death, for the LORD will work for each type of data it is applied to...
    3. Re:i read the fucking article, it is crap! by Anonymous Coward · · Score: 0

      It may be bad phrasing rather than bad logic. He may not be talking about viruses that haven't been discovered, but rather, viruses that we know about but which the person operating the laser doesn't necessarily know are in the blood sample. No need to test for the presence of Virus A if the laser destroys all samples of Virus A in the blood, just fire away. If it's there, it's destroyed; if not, you haven't lost any significant amount of time. Same principle as using disinfectant on a surface; you don't know if there's salmonella on your counter-top, but if there is, it's destroyed.

    4. Re:i read the fucking article, it is crap! by Paris_Hojo · · Score: 2, Insightful

      I interpreted "known or unknown" to mean the known or unknown presence of a known virus. For example, maybe it's known that this blood donor had AIDS. So they blast the bag with AIDS-killing frickin laser beams. All well and good, but suppose they don't know what other viruses are present? Maybe the donor had the flu? Maybe the donor had HPV? Rather than spending the money to test and run down any number of viruses that may be present in the blood just zap the baggie for AIDS, zap it again for influenza, zap the sonofabitch again for HPV...etc (g'n'r...too obscure?) So that may be what they meant by "known or unknown" viruses...but hey, at least you didn't come to a hasty conclusion and embarrass yourself trying to appear smart.

    5. Re:i read the fucking article, it is crap! by Paris_Hojo · · Score: 1

      note to self...REFRESH!!!

    6. Re:i read the fucking article, it is crap! by everett · · Score: 0

      What about viruses that mutate to resonate at the same frequency as blood?

      --
      Sig withheld to protect the innocent.
    7. Re:i read the fucking article, it is crap! by Anonymous Coward · · Score: 0

      A shower every now and then wouldn't hurt either.

    8. Re:i read the fucking article, it is crap! by X0563511 · · Score: 1

      Honestly I can't see that happening.... and only in extremely rare cases.

      Remember, for such mutations to succeed they have to both improve survivability without decreasing it.

      --
      For large sets, this will be our guide even unto death, for the LORD will work for each type of data it is applied to...
    9. Re:i read the fucking article, it is crap! by moranar · · Score: 1

      It wouldn't be on purpose, the viruses that resonated in tune with the blood would survive and infect, the others wouldn't.

      --
      "I think it would be a good idea!"
      Gandhi, about Internet Security
    10. Re:i read the fucking article, it is crap! by jcaplan · · Score: 1
      Yes, your interpretation appears to be correct. The context is given by the previous sentence.

      Some viruses, like HIV, have a window during which they are very difficult to detect.


      "This technique will be very useful to disinfect all the viruses, known or unknown," Tsen said. "This will make blood transfusion very safe."

      So, the known or unknown appears to refer specifically to the presence of HIV, not some mystery virus, which as the grandparent poster pointed out is implausible. The article could have been a bit clearer on this point.


      One other point to note is that while this technique may kill HIV in blood, it might not be able to cure HIV in whole people, since the laser would have difficulty penetrating the whole body. Perhaps one day we'll have folks going in for a "blood cleaning" like dialysis as a compliment to anti-retroviral treatments.

    11. Re:i read the fucking article, it is crap! by X0563511 · · Score: 1

      Think of the resonant frequency as a hash of the structure... while you can have a collision (remember, we are talking about an exact frequency...) that would be incredibly rare...

      --
      For large sets, this will be our guide even unto death, for the LORD will work for each type of data it is applied to...
    12. Re:i read the fucking article, it is crap! by moranar · · Score: 1

      How does "incredibly rare" compare against the number of virus molecules? I haven't a clue of the relative value.

      After all, idiots who buy the "enlarge your johnson" pills they are spammed about are also incredibly rare, yet it still seems to turn profits for the salesmen.

      --
      "I think it would be a good idea!"
      Gandhi, about Internet Security
  33. Re:Cells may be safe, but what about their content by A+beautiful+mind · · Score: 1

    Yeah exactly, there are 10000 cells created in the average body per second, even if DNA degradation is only a percent, it's very bad news.

    --
    It takes a man to suffer ignorance and smile
    Be yourself no matter what they say
  34. Can we try this on spammers? by StefanJ · · Score: 1

    You know, so we can see how high up the energy level can be dialed before it hurts. And then turn it up a little more.

  35. Just what we need by ILongForDarkness · · Score: 1

    A way of keeping tobacco crops healthy so they can be used to make more cigarettes. Oh I feel for the tobacco companies when they lose a crop, honestly I do.

  36. Why This Can Work Without Killing the Host by SwordsmanLuke · · Score: 2, Insightful

    There seems to be a lot of people here confused on how this laser can destroy the virus without harming the host cells. Please allow me to explain the natural wonder that is "Natural Harmonic Frequencies".

    First, imagine pushing someone on a swing. If you want to make the swing go higher, you have to push it just as it starts to swing forward. That way, the swing's energy is increased by the amount of your push, while still getting the full benefit of it's stored potential energy, and Hey, Presto - the swing goes higher. Because of the way swings (and wave energy functions of most sorts) work, the time between each optimal push remains the same. This is the key.

    Imagine a sine wave. If you view the wave at the right frequency - every PI units - you'll see the same value. If you were somehow pushing on the wave at those points, you would be changing the amplitude of the function by the same amount every time. If, however, you view the wave at the wrong frequency - say, every 1 unit - you'll get a different section of the wave each time. Over time your pushes will cancel each other out in this case.

    Now, if you push enough kinetic energy into pretty much anything, you create a short-lived wave within it as the energy which has not yet been absorbed or lost in some manner reflects back and forth within the structure. Imagine water sloshing in a tub or a building swaying in an earthquake. The speed at which this wave moves back and forth across the structure is the structure's natural resonant (or harmonic) frequency. This is what is being taken advantage of by this pulsed laser.

    By firing this laser at the same frequency that the virus happens to vibrate at, a wave is set up in the virus. Since the laser's pulse comes again at the optimal "pushing" time, the amplitude of the vibration increases. Other cells are being vibrated by the laser as well, but because their natural harmonics are different, the pulses cancel themselves out in those cells and they're fine. The targeted virus however, vibrates harder and harder until it literally shakes itself apart.

    In recent years, determining the natural harmonic frequencies of large structures has become an important part of engineering. More than one large structure has been destroyed by seemingly insignificant forces which just happened to be coming at the right frequency!

    See this for more mathematical details

    --
    Any plan which depends on a fundamental change in human behavior is doomed from the start.
    1. Re:Why This Can Work Without Killing the Host by Snocrash23 · · Score: 1

      Anyone else think of Royal Rife when they first read this?

      --
      Homebrew Science: http://homebrewscience.com
  37. Royal Raymond Rife by gygy · · Score: 1

    Somebody already did something very similar: http://en.wikipedia.org/wiki/Royal_Rife and http://www.rifehealth.com/

  38. This is awesome... by hoggoth · · Score: 1

    > The total energy required is reportedly far below the threshold for human tissue damage

    But you go first.

    --
    - For the complete works of Shakespeare: cat /dev/random (may take some time)
  39. Having read TFA, I still worry by Moraelin · · Score: 5, Informative

    Having read TFA, I still worry.

    1. All proteins in your body, and all proteins your body can possibly assemble for a virus capsid (and it must, because that's how virii multiply) are made of the same 20 aminoacids. The result, however, can range from relatively simple enzymes to gigantic mollecules, and they're folded in lots of funny ways too, to work like they're supposed to.

    I.e., I wouldn't be _too_ surprised if for _some_ particular frequencies (i.e., some very narrowly defined types of virii), something else in your cells had a resonance on the same frequency. Even if the total power isn't enough to vapourize a cell, it could still be pretty deadly.

    2. A capsid isn't a monolythic thing, it's made of several proteins which assemble themselves in that shape. That's how your body produces more capsids for the viruses an infected cell manufactures. It produces the capsid pieces, and those then assemble themselves around the pieces of viral DNA or RNA that were copied too.

    So I'm curious exactly in what way are the capsids "shattered" by that resonance. If it shatters the proteins themselves into aminoacids, yeah, that's the end of it. But then, see point 1, I'd worry which other proteins it can destroy like that. If it just shatters the (relatively) weaker bonds between the individual proteins that make the capsid, I would imagine that at least some of them will simply reassemble. Remember they're proteins which are pretty much built to do just that: connect to each other and form a capsid.

    3. Their claim that it can shatter HIV virii, while leaving the T cells intact, seems somewhat missing the point. It's the kind of solution that a physicist would imagine, if he doesn't know much about how a virus works.

    So let's get a bit into (a very over-simplified summary of) how a cell works, and a virus multiplies. (Warning: it's still a long read.)

    Your cells are basically a chemical computer whose function include building more building blocks for itself, or for more copies of itself. Your proteins, for example, are encoded by your DNA, as triplets of nucleotides. One such triplet is a "codon", and it identifies one aminoacid. (With some redundancy. You use 20 aminoacids, but since there are 4 possible nucleotides and there are 3 of them, there are 64 possible combinations. So it's quite usual that 2 or 3 different combinations mean the same aminoacid.)

    When a cell needs more of a certain protein, it first copies a segment of DNA to RNA and lets it loose. Each Then a ribosome reads that just like a piece of tape, one codon (group of 3 nucleotids) at a time, and assembles a chain of aminoacids matching that sequence. For each codon, it adds the matching aminoacid to the chain, and moves one position further. One codon means STOP, and when it reached that, it lets go of the newly built protein and stops.

    A virus works much the same. It builds more capsids, for example, by just letting loose a chain of RNA in your cell, which contains the information on how to build a capsid piece. (If it's a DNA based virus, it will first have to transcribe it to RNA, same as your cell does.) When enough of those capsid pieces have been built, they assemble themselves in a capsid around such a RNA chain.

    At the same time, of course, the virus will also have to get your cell to transcribe the RNA piece. That, however, is just a sub-case of the previous paragraph. One of the proteins encoded by the virus, is the "RNA replicase". It's an enzyme which copies RNA strands. So the virus will let one piece of tape with that information loose inside your cell, the cell transcribes it to RNA replicase, which in turn starts copying RNA strands non-stop. Some will be surrounded by the capsid pieces to form new virii, but some will just keep getting interpreted by your ribosomes, so the cell keeps producing more capsid pieces and more RNA transcriptase.

    To sum it up, an infected cell is, essentially, reprogrammed to keep producing viruses until it bursts. It's those pieces of gene

    --
    A polar bear is a cartesian bear after a coordinate transform.
    1. Re:Having read TFA, I still worry by Anonymous Coward · · Score: 0

      IANAB but AIDS and herpes DNA lay dormant for the long in your cells also without a capsid. It would seem they could not be eliminated with this treatment.

    2. Re:Having read TFA, I still worry by Anonymous Coward · · Score: 0
      I would like to preface this with the notation that I am a biochemistry Ph.D student and we have recently discussed this method in one of my courses.

      You have an excellent view of basic protein biochemistry. However, there are a few errors here which affect the conclusion you draw.

      The metaphor of a "pane of glass" that has been used is a wee bit off. Think of proteins more like old Tinker Toys. The rods connecting the spools are the chemical bonds. Also think of it as having weaker "bonds" (bits of string). These weaker "bonds" represent intermolecular forces (van der Waals, charged interactions, hydrophobic effect) between the side chains of the amino acids and provide most of the energetic contribution to protein structure. It is a simultaneous harmonic resonance of several (likely dozens if not hundreds) of these bonds (and "bonds), and the subsequent breaking due to the introduction of energy by the laser, which causes multiple bonds to break in the protein, thus denaturing it. I would venture to guess that the capsid doesn't shatter into pieces like a pane of glass, but that the gross effect is rather more like melting, leaving large gaping holes in the capsid.

      With the resonant frequency of a protein being a function of a large combination of its bonds, and even more so of its intermolecular forces, we can conclude that viral proteins, necessarily being small, will require less energy to destroy than most human proteins, which can be much larger due to size and complexity limitations. This lower energy requirement is due to the dearth of intermolecular forces - energy required to denature a protein is directly proportional to the amount of intermolecular forces holding it in its current conformation.

      Even if you shattered all the capsids _inside_ those cells too, that will just essentially reinfect the cell with even more genetic material telling it to make more viruses. Not that it matters that much, because it already has enough of that anyway.


      The first problem here is that most, if not all, viruses do not enter the host cell, but rather inject their viral load into the cell via active transport. This is a function of the virus and cannot be replicated with simply the viral contents.

      The second problem here is that raw genetic material, even were it inside the host cell (i.e. not incorporated into the nucleus), is unable to generate proteins. The viral DNA or RNA must transfect the cellular genome inside of the nucleus. This requires one of several carefully constructed enzymes depending upon the type of virus, host, prior host, etc. Also, by forcing the release of proteins into cytosol via destruction of the capsid gives the cellular and extracellular defense mechanisms much more time to work, even if the transfection proteins are already assembled and active.

      Issues with the parent well thought out post aside, I feel the need to mention that the use of the phrase "psuedo-science" to refer to something we have been doing for years (look up MALDI Mass Spectrometry of proteins and check out its limitations) rather biased in the article summary.
  40. Sure ... by BenBoy · · Score: 1

    ... but how you gonna find a shark that small?

  41. Human Viruses by itsybitsy · · Score: 1

    Now if only it could shatter the most destructive viruses that infect humans: the Human Mind Viruses such as any thought that is taken to be true without evidence. Yes, ALL beliefs are a form of virulent virus with some being highly toxic to those infected and, more often than not, to others who are the victim of humans infected by a belief - aka a meme, aka a human mind virus.

    Destroy all beliefs.

    The worst offender is of course the notion of god.

    1. Re:Human Viruses by jfreaksho · · Score: 1

      I believe you are correct, sir.
      J.

    2. Re:Human Viruses by itsybitsy · · Score: 1

      Nice. Cute.

      Since your comment a belief it must be destroyed.

      Whether or not I'm right or correct has nothing to do with anything. It's a point of view not an absolute statement.

      The notion of beliefs as the source of evil that humans use to justify and cause harm to others is what's at issue.

      If you believe you are right you are likely perpetrating evil in the world against other human beings. Eliminate your belief. Change your thinking. Become aware of the real reality that has no beliefs.

  42. Re:Lead Poisoning by Anonymous Coward · · Score: 0

    A 9 mm or even 30.06 bullet would be much more effective than this thing to kill someone.

  43. HIV doesn't live long outside by Moraelin · · Score: 1

    HIV doesn't live long outside the body. Hence, trying to sterilize a disco with lasers would be a bit of a waste.

    If you want to get more details as to why, some viruses are composed of just the capsid, some, however, include a viral envelope: a membrane of a double layer of lipids, much like the membrane of your own cells. In fact, it _is_ a piece of the membrane of the infected cell that produced the copies of the virus, plus some viral proteins to help it attach to the next cell it infects.

    You'd think that an extra layer would make them more robust, but actually it doesn't. It makes them more sensitive to dessication, so they survive a lot shorter times outside the body.

    HIV is one of that kind of viruses with a viral envelope, so...

    So, anyway, if you wanted to make sterilize discos against HIV, you'd just need to make sure the air is very dry. I'm sure that can be integrated in the air conditioning, cheaper and more effective than special lasers.

    Not that it would make much of a difference, but if you need that warm fuzzy sensation that you've done _something_ against HIV (even if it doesn't actually do anything), it's one way to go.

    Of course, neither will do anything for people who've pawed each other at the disco for a few hours and then decide to go have a quick fuck to relieve the horniness. Which is how HIV actually gets transmitted.

    --
    A polar bear is a cartesian bear after a coordinate transform.
  44. Ahhh, but... by Chabil+Ha' · · Score: 1

    Nature (if I may anthropomorphize her) has taught us time and time again that she will adapt. Given that this will work, what happens when the virus adapts to 'vibrate' at the same resonance as our cells?

    --
    We're all hypocrites. We all have hidden parts, it's the contrast between them that make us more a hypocrite than others
    1. Re:Ahhh, but... by Dogtanian · · Score: 1

      Nature (if I may anthropomorphize her) Don't do that; Nature just *hates* being anthropomorphized.

      (Credit to.... uh, someone else!)
      --
      "Slashdot - News and Chat Sites Deviant". (Click "homepage" link above for details).
  45. I have chosen to test this station's power by BamZyth · · Score: 1

    As if millions of virus suddenly cried out in terror, and were suddenly silenced.

    1. Re: I have chosen to test this station's power by joelleo · · Score: 1


      One thousand, nay a million voices full of fear.
      And terror possesed me then.
      And I begged,
      "Angel of the Lord, what are these tortured screams?"
      And the angel said unto me,
      "These are the cries of the virii, the cries of the virii!
      You see, Reverend Maynard, tomorrow is pre-transfusion blood disinfection day and to them it is the holocaust."
      </revMaynard>

      --
      "In the end, there is simply no weapon more devastating than the truth, delivered in just the right way." - tnk1
    2. Re: I have chosen to test this station's power by armareum · · Score: 1

      Nice Tool>>Undertow>>Bonus track reference...

      --
      Is this a rhetorical question?
  46. Then we all catch Boogie Fever! by bareman · · Score: 1

    I think it's going around.

  47. Re:Lead Poisoning by Anonymous Coward · · Score: 0

    But the laser would be soooooo much slower

  48. Obviously... by Auraiken · · Score: 4, Funny

    How do you calibrate this magic laser to several unknown viruses at the same time?

    With funding of course! :D

  49. Other uses? by blacklagomorph · · Score: 2, Insightful

    Even if there is no way to use this method to destroy viruses without damaging other cells couldn't this be used as a way to sterilize objects?

  50. Unfortunately for your delivery mechanism... by Picass0 · · Score: 1

    Sharks are too expensive for many HMOs. My doctors insist on treating my high cholesterol using ill tempered bass.

  51. Ramen scattering? by Anonymous Coward · · Score: 0

    Is this, like, the modern Asian equivalent of divination by scattering bones in a bowl?
    If so, I still fail to see how knowledge obtained from Ramen scattering would help them calibrate the laser.

  52. Still could be effective by Anonymous Coward · · Score: 0

    If all the capsids inside cells are shattered and unusable, that will make it harder for the virus to infect other cells, won't it?

  53. Nope by Moraelin · · Score: 1

    If all the capsids inside cells are shattered and unusable, that will make it harder for the virus to infect other cells, won't it?


    If you shattered all those capsids as thoroughly as you can, into the aminoacids they came from, now the cell would have inside:

    - all the viral RNA telling it how to make more viruses, _and_

    - a lot of aminoacids from which to make those viruses again
    --
    A polar bear is a cartesian bear after a coordinate transform.
    1. Re:Nope by Anonymous Coward · · Score: 0

      How do you destroy the RNA?

    2. Re:Nope by Moraelin · · Score: 1

      How do you destroy the RNA?


      In much the same ways that would destroy the host's DNA too.
      --
      A polar bear is a cartesian bear after a coordinate transform.
    3. Re:Nope by ResidntGeek · · Score: 1

      RNA is broken down continuously by RNAases. It'll go away on its own relatively soon.

      --
      ResidntGeek
  54. Re:white blood cells, activated by CodeShark · · Score: 2, Interesting
    They are already working on an MS treatment where they basically take a person's own white blood cells and then modify them to go after the myelin-reactive white blood cells. Which means that they must have a way of identifying them -- so the question becomes, can a treatment be developed which basically attracts the myelin reactive cells only into the femtolaser scanning field where thay can be nuked, without killing off the rest of the immune system.

    But I'm not good enough at immunology to know if once killed, the MS causing cells would be gone or if the bone marrow would simply repopulate the count again later.

    --
    ...Open Source isn't the only answer -- but it's almost always a better value than the alternatives...
  55. Assembly is a delicate process by Anonymous Coward · · Score: 0

    IANAL, but I am a biochemist specializing in viral capsid dynamics.

    Disruption of covalent bonds isn't the only way to permanently disrupt viral capsids. As other people have noted, there are scenarios in which even a favorable assembly reaction might not happen due to dispersion of the subunits. However, for many capsids the assembly process is highly regulated and must be done in a very specific fashion: interfere with the process even a little and it won't go forward. One example is the presence of ions such as zinc: in the case of the Hepatitis B capsid, if there's a little too much of it the capsid assembly is interrupted and aberrant structures are produced which can effectively tie up the subunits in a non-infective form permanently.

    There's also the chance that the resonance approach could alter the structures in a way that they remain intact, but non-infectious. To back things up a step, many viruses have been observed to have a dynamic, fluctuating structure, which moves on a larger scale and slower speed than the molecular vibrations common to all systems. This has been referred to as "breathing" in the field, and it often involves large reversible motions within the subunits, sometimes exposing the interior regions of protein to the outside solution. If you can stop this "breathing", you will change the behavior of the virus capsid. For the human cold virus, doing this with drugs that bind to the capsid itself will neutralize infectivity. Similar results have been seen by quenching this motion with temperature, etc. It wouldn't shock me at all if the severe perturbations of a laser (or ultrasonic, that's been used in the past) pulse could permanently induce a non-functional state by partially unfolding the subunits.

    But moving away from my area of expertise, maybe someone knowledgeable about lasers etc could enlighten me on the details of how this resonance system works. As I mentioned, the unique motions of viral capsids tend to be very slow relative to other biological molecules, even up to the second timescale. Wouldn't the pulses need to be very long in duration to excite that type of motion via the wavelengths used? Or are the pulses themselves time-correlated as the exciting resonance, with broad spectrum wavelengths not being critical?

  56. related to the "blackest material" laser? by IamWasabi · · Score: 1

    I think the last time I saw the term "femtosecond" it was related to a laser that could "paint" metals the blackest black on earth. I just wondered if there was any cross experimentation with the same laser?

    --
    [/war] "All the world's a stage, And all the men and women merely players."
  57. Plasma donations, maybe by Rob+Simpson · · Score: 2, Interesting

    Since all the blood cells are removed from the donated plasma, it'd be much easier to make sure there was zero effect on what is left (normal blood proteins), and there wouldn't be any cells to make new virus.

    1. Re:Plasma donations, maybe by AgentPaper · · Score: 1

      That's true for fresh frozen plasma, but the only patients that are getting FFP now are people with clotting disorders and rarely, patients with other blood dyscrasias. Ringer's lactate and D5W have been the fluids of choice for volume replacement for at least the last ten years. Moreover, FFP and acellular blood concentrates still contain clotting factors and complement proteins, which could conceivably be affected adversely by this process.

      --
      First rule of trauma: Bleeding always stops.
  58. Original paper (Re:Radiometry Questions) by Anonymous Coward · · Score: 0

    After reading the article, I'd like to see the actual papers they've written on this. The original paper is available online under a creative commons licence.

    According to this, the technique works by exciting a Raman-active vibrational mode of the virus' protein coat. However it requires a power density of at least 50 Megawatts per square centimetre - which is quite a lot, even with only 0.5 nanojoules per pulse. It took ten hours to kill the viruses in their sample.

    Somebody correct me or back me up on this, please: if we're dealing with EM radiation of a low enough energy, aren't these guys in the domain of short bursts of directed radio waves? It's 425 nm radiation from a titanium:sapphire laser - in other words, indigo-coloured light.
  59. Re:Cells may be safe, but what about their content by Eternauta3k · · Score: 1

    even if DNA degradation is only a percent, it's very bad news
    Depends on the damage, cells are great at repairing DNA (which is actually damaged quite often).
    Still, 1% might be too much
    --
    Yeah. Would you choose a neurosurgeon who pokes around people's brains in his spare time? I wouldn't.
  60. All important blood cleaning. by Anonymous Coward · · Score: 0

    Red blood cells and plasma should not contain any DNA parts.

    White blood cells can cause rejection and carry viruses this contain DNA.

    So on one way if it complete nuked DNA it would not be a problem. As long as it left Red Blood cells operational. This could expand the number of people who could give blood. Or even more scary make pigs blood usable in humans with relative safety.

  61. Neanderthal Trilogy? by HiramAbif · · Score: 1

    Robert J Sawyer mentions something very like this (developed by the Neanderthals in their parallel universe) allowing destruction of viruses (virii???) and pathogens in humans. I had no idea it was based on anything even remotely similar in reality. Pretty cool.

  62. That's not what TFA said, though by Moraelin · · Score: 1
    Well, that's very insightful, but quoth TFA:

    The laser shattered the capsid at low energy: 40 times lower, in fact, than the energy level that harmed human T-cells. Other types of radiation, like ultraviolet light, kill microbes on produce, but would damage human cells.


    It seems to me like they're explicitly planning to use it on something that _does_ have cells left, and more specifically also the infected T cells. (Which would then continue to produce virus copies anyway.)

    I also notice that they mention "blood" and "blood banks" -- and they say it was Tsen himself who said that -- but I searched for the word "plasma" and I can't find any mention of it in the article.

    So, you know, at the very least I stand by what I've said: having read TFA, I don't find anything there to make me worry less.

    Now maybe someone smarter will find a better use on it. Maybe on plasma. Who knows? But TFA doesn't say that.
    --
    A polar bear is a cartesian bear after a coordinate transform.
  63. It's More than AIDS by TheStonepedo · · Score: 1

    Some of the worst AIDS epidemics are in relatively poor areas where education and prophylactics are in short supply. Defeating a virus is a noble goal, but before that is possible it will be important to work on the problems of feeding and educating at-risk populations. Dying of a nasty disease is nasty. Sentencing people to die of famine by eradicating a nasty disease and causing rapid population growth is cruel.

    --
    I'll be your candy shop of infinite deliciousity if you'll be my discotheque of endless rump-shaking.
  64. One virus. Two viruses. by AP31R0N · · Score: 2, Insightful


    One virus. Two viruses.

    The urge to say virii, is hypercorrection. Which is to say... wrong.

    But don't take my word for it:
    http://en.wikipedia.org/wiki/Hypercorrection
    http://en.wikipedia.org/wiki/Plural_of_virus
    http://linuxmafia.com/~rick/faq/plural-of-virus.html
    http://homepages.tesco.net/J.deBoynePollard/FGA/plural-of-virus.html

    So unless you are trying to be cute, the plural of virus is viruses.

    And know you know!

    This is when a stupid person, feeling personally hurt by learning, will whine about language changing over time.

    --
    Utilizing the synergization of benchmark e-solutions to pre-workaround action items!
  65. We're being a little harsh, no? by LumenPlacidum · · Score: 1

    I'd like to start off by saying that I know very little about biology. I'm going to have misconceptions, please correct those that I bring up.

    It seems like many people are saying that because this is not a viable working solution now, that it's a terrible thing that these people are even working at it. This seems like a very closed-minded and limited approach to the design of solutions to ANY problem. I think the way things like this work is that someone develops something, and they get excited about the application of their work. They may not actually produce a practical application of their work, but they get the idea out. Probably someone else looks and says "Hey! I know how to solve this problem!" And, by bits and pieces, a working solution gets made. I'm not saying it WILL happen with this technology, but attacking the budding technology because of its lack of immediate practical use seems short-sighted. (For the record, I'm a mathematician... we're not particularly well-known for developing things that get immediately applied to practical use)

    It seems like the problems being stated involve the idea that while this could conceivably attack free virii in blood, it would do nothing to infected cells (at best... I guess at worst it could vaporize them with everything around, which I admit is a bad thing). However, do infected cells live forever? If this process is used to prevent viral information from moving through the blood from one cell to another, then hasn't the infection been curbed? The infected cells would eventually die. If I'm wrong, and infected cells can indeed live long enough, then couldn't this be used in conjunction with another technology that might be developed that kills infected cells but, unfortunately, can do nothing to a virus that's floating around in the blood? Even if such a technique doesn't exist now, it might later.

    If it works as is stated, then at worst aren't we talking about fewer virii traversing the blood stream and infecting other cells anyway? Even if it's not a cure, slowing down the spread of infection is a desirable consequence of a treatment.

    A post had been made indicating that this would simply break up the parts of a virus, which would then potentially re-form from other floating bits around in the blood. However, I thought the body actually had means of cleaning itself. Here's where my very limited knowledge of biology really kicks in. Wouldn't the protection granted by a virus' protein coat be lost if the protein coat were scattered and left to float around? Idly floating proteins are probably on the immune system's target list, no?

    Well, tell me where I'm wrong. I'd love to learn a bit about it.

    "Nothing is impossible! That's what being a scientist is all about!"

    1. Re:We're being a little harsh, no? by lukesl · · Score: 1

      "Nothing is impossible! That's what being a scientist is all about!"

      As a scientist, I think it's important to distinguish between things we know are possible but can't do, things we don't know if they're possible or not, and things we know are impossible. And there are plenty of things we know are impossible, not just with current technology, but with any technology. Technology can only get you so far, and it's important to understand when fundamental limitations are present. In this case, people aren't 1 mm thick, and if you irradiated them with enough light energy to penetrate all the way through, you would kill them. There are better ways to clear viruses out of people.