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Viruses May be the Precursors of All Life

steveha writes "The cover story for this month's Discover magazine tells of a recently discovered gigantic virus, Mimivirus, that has blurred the lines between viruses and bacteria, and spurred speculation that viruses could be the reason life evolved past single-celled organisms." From the article: "This is striking news, especially at a moment when the basic facts of origins and evolution seem to have fallen under a shroud. In the discussions of intelligent design, one hears a yearning for an old-fashioned creation story, in which some singular, inchoate entity stepped in to give rise to complex life-forms--humans in particular. "

488 comments

  1. FIRST TROUT! by Anonymous Coward · · Score: 0

    I AM A FISH!

  2. We're all just symbiant hosts by bobalu · · Score: 1

    Sheesh. Wonder if I can stop payment on my credit cards and blame THEM.

    --
    The revolution will NOT be televised.
    1. Re:We're all just symbiant hosts by Anonymous Coward · · Score: 0

      We're all in the same pot, but you took responsibilty for 'your' credit card.

      Imagine a religious parasite in an atheist or vice-versa... Thats why ID is so controversial.

  3. YEah baby, HaXXors rule by Anonymous Coward · · Score: 0

    Does this mean that the virus writers are God?

    Symmantec is the Devil?

    My computer's the Virgin Mary?

    1. Re:YEah baby, HaXXors rule by Anonymous Coward · · Score: 0

      My computer's the Virgin Mary?

      Considering it's your computer, I don't think it would be considered a virgin anymore.

    2. Re:YEah baby, HaXXors rule by moro_666 · · Score: 1

      if virus writers are 'kindof gods', then we should uninstall antivirus software from everywhere, perhaps the viruses really let windows machines evolve and we'll have soon gentoo all over the place :)

      actually this is what i have been wondering for a while, if we create a simple program which can rewrite itself, and we let a 'virus' attack it, and modify it randomly, will we end up with anything reasonable after enough modifications ? rationality says no, but the theory of possibilites says hell yeah !

      --

      I'd tell you the chances of this story being a dupe, but you wouldn't like it.
    3. Re:YEah baby, HaXXors rule by Anonymous Coward · · Score: 0

      Check out Genetic Programming. It randomly generates lots of programs tests them for fitness (how well they achieve a goal) and then mutates and crosses the programs over and over and over again until a program that achieves the goal the best is achieved. It works actually works and has had real world applications.

  4. Does this mean... by WebHostingGuy · · Score: 1

    that the computer viruses of today will lead to spur computers to life?

    --
    Quality Hosting e3 Servers
    1. Re:Does this mean... by mcho · · Score: 1

      that the computer viruses of today will lead to spur computers to life?

      Why not?

    2. Re:Does this mean... by cashman73 · · Score: 1
      Or you could look at it the other way around,... the fact the modern day Windows still has many characteristics of the early viruses. It apparently just "evolved" from the precursor viruses.



      Of course, believers in the Flying Spaghetti Monster will have trouble with this theory,...

    3. Re:Does this mean... by wrf3 · · Score: 1

      Only if the computers get to the point where they get into arguments over whether the computer virus was designed or created through a random process.

    4. Re:Does this mean... by 7macaw · · Score: 1

      Yes, but only those that run Windows.

    5. Re:Does this mean... by JPriest · · Score: 1

      I was thinking the same thing. Maybe someone will eventually write a virus that monitors for new vulnerabilities and updates itself to support exploiting them. That would be interesting.

      --
      Saying Java is nice because it works on all OS's is like saying that anal sex is nice because it works on all genders.
    6. Re:Does this mean... by thefirelane · · Score: 1

      that the computer viruses of today will lead to spur computers to life?

      No, because computers are intelligently designed

    7. Re:Does this mean... by System.out.println() · · Score: 1

      No, because computers are intelligently designed ....by Microsoft?

    8. Re:Does this mean... by ArsenneLupin · · Score: 1
      Only if the computers get to the point where they get into arguments over whether the computer virus was designed or created through a random process.

      ... and ironically the computer that argued that the virus was designed (i.e. programmed by some teenage miscreant...) would be right!

      Hurraih for Intelligent Design!

    9. Re:Does this mean... by dcapel · · Score: 1

      design, yes.

      intelligent? Heh... not necessarily. Script kiddies arn't prooven to be intelligent :)

      --
      DYWYPI?
    10. Re:Does this mean... by ArsenneLupin · · Score: 1
      intelligent? Heh... not necessarily. Script kiddies arn't prooven to be intelligent :)

      Well, even if they're not very intelligent, they're still more intelligent than that poor dweeb who still thinks that windows is secure...

    11. Re:Does this mean... by wrf3 · · Score: 1

      So the question becomes (which a portion of the scientific community refuses to consider solely because of the implications to their worldview) is: Can design be scientifically detected and, if so, how?

    12. Re:Does this mean... by ceoyoyo · · Score: 1

      Hm... write a virus with a plugin architecture so that they can transmit new chunks of code to each other like bacteria do with plasmids. Interesting.

      One of these days somebody's going to write a practical self-modifying virus. THEN we'll have some fun.

    13. Re:Does this mean... by Eli+Gottlieb · · Score: 1

      Without knowing (in whole or part) the nature of the designer you cannot detect if something was designed.

      On the other hand, if you know something was designed you can infer characteristics of the designer.

      Due to these facts we'll never figure out whether life on Earth is random or started from a design of some sort.

    14. Re:Does this mean... by wrf3 · · Score: 1

      Without knowing (in whole or part) the nature of the designer you cannot detect if something was designed.

      How do you know?

      Due to these facts we'll never figure out whether life on Earth is random or started from a design of some sort.

      Probability theory seems to show that random processes cannot account for the complex information in living things. YMMV.

    15. Re:Does this mean... by realilskater · · Score: 1

      that the computer viruses of today will lead to spur computers to life?

      That is a likely assumption. In an attempt to fight virii more efficiently the idea of writing computer "anti-bodies" or good virii. It is not much of a leap from a virus that helps to a fully functional network "immune system" that actively probes the network for bad virii and deals with them accordingly and automatically. Something like this could be considered "intelligent", but intelligence always depends on you definition of the word.

    16. Re:Does this mean... by hunterx11 · · Score: 1
      Probability theory seems to show that random processes cannot account for the complex information in living things. YMMV.

      It's a good thing that nobody believes that the complex information in living things is the result of random processes, then.

      --
      English is easier said than done.
    17. Re:Does this mean... by TheLink · · Score: 1

      That shouldn't be too hard in forth, lisp, perl, python etc.

      The code could search for other code using google, fetch the code and run it in an "eval".

      The resulting code could then post itself or a modified version of itself onto the web (search for guestbooks, forums etc and submit itself).

      The initial vector could actually be harmless. For example: it could automatically download and run random game code from a site that's top on a google search for particular keywords (e.g. perl game).

      It'll be interesting to see how the AV people make signatures for such stuff...

      --
    18. Re:Does this mean... by Anonymous Coward · · Score: 0

      > No, because computers are intelligently designed

      Hmm, I thought computers evolved from random assembly. Weren't the transistors simple switches before they evolved into controlled switches by some random chance?

      I've never seen a computer actually being built, and haven't seen any designer personally, but all the computers I bought over the years seem to be related.

      Don't be ignorant by saying they are intelligently designed. I know what I see.

    19. Re:Does this mean... by ceoyoyo · · Score: 1

      Writing plugins is a piece of cake in Python. I'd be a bit reluctant to have my virus depend on an interpreter though.

      The AV people might have to counter with an ACTUAL "immune system." See if they can live up to their marketing claims!

    20. Re:Does this mean... by Anonymous Coward · · Score: 0
      "Writing plugins is a piece of cake in Python. I'd be a bit reluctant to have my virus depend on an interpreter though."

      Perhaps for just a concept design? Then port it to C/C++ :-)

  5. Virii need cells by sqeaky · · Score: 0

    I thoguht that Virii needed a host. I can see simply self replicating Amino acids a being a host, be attacked by loosely coupled RNA strand incapable of self replication, but wouldn't that mean that the Self replicating amino acids where the precursor of life.

    1. Re:Virii need cells by Miraba · · Score: 2, Informative
      If you RTFA, you'd see this:
      Mimi's outsize complement of genes--so large that the virus is tantalizingly close to being an independent organism--suggest to many scientists that Mimivirus underwent reductive evolution early on and shed some of its genome, including the genes necessary to replicate on its own.
      In other words, Mimi suggests the possibility that virii are descended from cells.
    2. Re:Virii need cells by Anonymous Coward · · Score: 0

      No, the conclusion to draw is that a hypothetical ancestral
      virus was more cell-like. (And I don't mean like a multi-core cpu)

      Viruses might once have had the option of reproducing on their own
      and in the course of evolution shed those genes.

    3. Re:Virii need cells by dancpsu · · Score: 1

      Mimivirus underwent reductive evolution early on and shed some of its genome, including the genes necessary to replicate on its own.

      Wait, doesn't that suggest that the Mimivirus is the opposite of what we are looking for? How does a bacteria devolving to a virus help us find what started life in the first place?

      --
      "Scientists don't change their minds, they just die." -- Max Planck
    4. Re:Virii need cells by Rei · · Score: 1

      Yet, what comes before it? "more complex than mimivirus" means a darn complex organism.

      I really don't get the obsession (in discussions of the origin of life) with the concept that life must be DNA or RNA based, and that when it is no longer, it isn't life. If evolution has shown us anything, it is that *nothing* stays the same for long. Everything builds up on the scaffolding of something simpler, something that had a different purpose or even no purpose.

      Picture the humble BSE prion. A simple self-replicator, it is an extreme in the case of a "limited" lifeform. It can only take one very specific input for its reproduction, and cannot adapt. Other simple cases are ligases like the SunY self replicator or the Ghadiri peptide. They piece together two simpler pieces into themselves. Without those pieces, they're useless.

      Yet, you can get simpler still: a ligase that *doesn't* necessarily make a copy of itself: a chemical that simply makes chemicals "similar" to it. In short, it concentrates "like" instead of "self". The more varied the inputs, the less predictable the output. However, over time, it and its family of "like" would become concentrated. How close such chemicals get to producing exact copies of themselves could steadily progress overtime, often involving the outputs of one catalytic reaction to lead into the next. In time, you have a regional hypercycle - a large glob of self-increasing chemicals in a given region which can take a variety of simple inputs to produce themselves.

      DNA, RNA? Doubtful. It might well not even be peptides; there are all kinds of catalysts in the world, after all. But whatever is most efficient gets carried on to the future; the older, less effective mechanisms get weeded out. And soon it would start to get weeded: spacial constraints would cause "speciation" of the hypercycle as the reactions slowly drift apart. When such hypercycles from different regions end up merging back together, they will be competing for the same resources. Some catalysts will be common between them. Others won't be. Any that can poison each other's reactions will take the upper hand. Soon, walling yourself off at times becomes advantageous even if it limits your nutrient intake; simple membranes are pretty easy to make (phospholipids naturally form into sheets, for example). Eventually your hypercycle is a haphazard Ur-cell, and from then-on, life steadily becomes more and more like we know it.

      --
      I was watching this thing on TV about some guy named Hitler. Someone should stop him!
    5. Re:Virii need cells by Miraba · · Score: 1

      The division between virii and cells has much to do with the fact that cells are capable of self-replication and virii are not. If we discover virii that are capable of self-replication (such as a Mimi ancestor), they would probably be classified as cells.

      "It has DNA and a membrane and can replicate on its own, but it's still a virus!"
      "Just call it a cell. Unless you'd like to change the definition?"

    6. Re:Virii need cells by Miraba · · Score: 1

      It implies that virii are not a different branch of life (if you classify them as alive), but that they are a sub-branch on one of the trees we've already constructed (or that cells are a sub-branch of virii, depending on how you view it). If we assume that similar elements of virii and bacteria are from a common ancestor, we now have those elements are necessary components of that unknown ancestor and can start to make a (mental) sketch of what it may have been like.

      If one assumes that virii and cells have unrelated origins, no common ancestor can be constructed.

    7. Re:Virii need cells by calzones · · Score: 1

      Brilliant. Absolutely spot-on post. I wish I had mod points x10

      I am in 100% agreement. This stuff should be taught in grade school, afaic

      Richard Dawkins, get in the classroom!

      --
      Asking people to think is like asking them to buy you a new car
    8. Re:Virii need cells by Miraba · · Score: 1

      I'm stunned that you spent that much time on /. going into the origins of life. Might you perhaps be a fellow biologist? If not, you're a most educated layman. ;)

    9. Re:Virii need cells by Pooua · · Score: 1
      I really don't get the obsession (in discussions of the origin of life) with the concept that life must be DNA or RNA based, and that when it is no longer, it isn't life.

      I haven't seen this obsession, certainly not among biologists.

      If evolution has shown us anything, it is that *nothing* stays the same for long. Everything builds up on the scaffolding of something simpler, something that had a different purpose or even no purpose.

      That would be a tautology.

      Picture the humble BSE prion. A simple self-replicator

      Not exactly; it's just a protein. By itself, it doesn't do anything that any other protein would not do. It's "replication" consists of increasing the likelihood that normal proteins surrounding it will adopt its deformed shape.

      it is an extreme in the case of a "limited" lifeform.

      Prions aren't alive, any more than cyanide is alive.

      It can only take one very specific input for its reproduction, and cannot adapt. Other simple cases are ligases like the SunY self replicator or the Ghadiri peptide. They piece together two simpler pieces into themselves. Without those pieces, they're useless. Yet, you can get simpler still: a ligase that *doesn't* necessarily make a copy of itself: a chemical that simply makes chemicals "similar" to it. In short, it concentrates "like" instead of "self". The more varied the inputs, the less predictable the output. However, over time, it and its family of "like" would become concentrated. How close such chemicals get to producing exact copies of themselves could steadily progress overtime, often involving the outputs of one catalytic reaction to lead into the next. In time, you have a regional hypercycle - a large glob of self-increasing chemicals in a given region which can take a variety of simple inputs to produce themselves.

      And so the biological evolutionist explains why all water found today consists of H2O. Natural selection weeded out all the other variants of water.

      DNA, RNA? Doubtful. It might well not even be peptides; there are all kinds of catalysts in the world, after all. But whatever is most efficient gets carried on to the future

      In textbook Darwinism, that would be true. The real world is messier. Less fit creatures are not always killed off; more fit creatures do not always reproduce. Some junior evolutionists get around this fact by redefining "fit" to mean, "what actually survives." Circular reasoning.

      the older, less effective mechanisms get weeded out. And soon it would start to get weeded: spacial constraints would cause "speciation" of the hypercycle as the reactions slowly drift apart. When such hypercycles from different regions end up merging back together, they will be competing for the same resources. Some catalysts will be common between them. Others won't be. Any that can poison each other's reactions will take the upper hand. Soon, walling yourself off at times becomes advantageous even if it limits your nutrient intake; simple membranes are pretty easy to make (phospholipids naturally form into sheets, for example).

      That assumes the chemicals have the option of creating this wall, instead of merely benefitting from a wall that happens to be there. But, in the fairy tale world of abiogenesis, imagination rules.

      Eventually your hypercycle is a haphazard Ur-cell, and from then-on, life steadily becomes more and more like we know it.

      Again, that is merely a fairy tale, one without the least bit of empirical evidence. No one--not even Fox--has ever witnessed life arise from non-life.

      --
      Taking stuff apart since 1969 (TM)
    10. Re:Virii need cells by Bastard+of+Subhumani · · Score: 0
      Some junior evolutionists get around this fact by redefining "fit" to mean, "what actually survives." Circular reasoning.
      More like what actually reproduces. But either is better than the incorrect interpretation of fit to mean some subjective or aesthetic judgement.
      --
      Only three things are certain; death, taxes, and apocryphal quotations - Ben Franklin.
    11. Re:Virii need cells by Rei · · Score: 1

      I haven't seen this obsession, certainly not among biologists.

      And I have. "RNA World" seems to be the current dominant hypothesis.

      If evolution has shown us anything, it is that *nothing* stays the same for long. Everything builds up on the scaffolding of something simpler, something that had a different purpose or even no purpose.

      That would be a tautology.


      A basic statement of facts.

      Picture the humble BSE prion. A simple self-replicator

      Not exactly; it's just a protein.


      You're disagreeing with my statement, "a simple self-replicator"? Then you need to argue that it's neither simple nor does it self-replicate (replicate without the assistance of other molecules except inputs).

      By itself, it doesn't do anything that any other protein would not do.

      Neither does DNA; it cannot replicate by itself. An entire cell cannot replicate in a void; everything takes inputs. A self-replicator requires nothing else to help with the assembly, but still takes inputs. In the case of BSE, it requires a normal prion.

      It's "replication" consists of increasing the likelihood that normal proteins surrounding it will adopt its deformed shape.

      Picture a single BSE prion and a normal prion encountering each other.

      1) How many BSE prions in the area are there before the encounter? (Answer: 1)
      2) How many normal prions are in the area are there before the encounter? (Answer: 1)
      3) How many BSE prions are in the area after the encounter? (Answer: 2)
      4) How many normal prions are in the area are there after the encounter? (Answer: 0)

      This is self replication. It is self replication with a *very* specific, limited input, but to argue that it's not A) replication, and B) done without external assistance (the two components of "self replication") is just silly.

      Prions aren't alive, any more than cyanide is alive.

      Amazing! Tell me what inputs a molecule of a given cyanide compound uses to increase its own quantity. I would be fascinated to find out. I may even write a paper on it; this is big news! You could find your name in Nature!

      And so the biological evolutionist explains why all water found today consists of H2O. Natural selection weeded out all the other variants of water.

      Actually, it did, in a way. Thermodynamic selection weeded out H2, H2O2, etc. Water is a local maximum (or minimum, depending on how you look at it).

      In textbook Darwinism, that would be true. The real world is messier. Less fit creatures are not always killed off; more fit creatures do not always reproduce.

      In the short term; not in the long term. If anything qualifies as "long term", 4.5 billion years does. Also, in evolution of macroorganisms as we see it, there are a lot of other influences beyond simple natural selection - sexual selection, the heavy influence of chance through coincidentally failed mimicry, being at the wrong place at the wrong time, etc. A hypercycle in a geologically stable region simplifies the problem down to its most basic elements: how fast you can process inputs (and stop chemicals that you're competing with from processing inputs).

      That assumes the chemicals have the option of creating this wall, instead of merely benefitting from a wall that happens to be there. But, in the fairy tale world of abiogenesis, imagination rules.

      Yes, everyone knows that producing chemicals that naturally form into membranes is a horribly complex task that couldn't occur by chance! Oh wait...

      Glycerophospholipids, one example of thousands that can automatically form membranes, are produced from glycerol, two organic acids (of widely varying types), and phosphoric acid. That's it; it doesn't even take a catalyst. Organic acids can be as simple as a hydrogen with a COOH, or any R group for that matter (longer alkanes would be better). Organic acids are very widespread in nature, and not just on Earth. Phosphoric acid occur

      --
      I was watching this thing on TV about some guy named Hitler. Someone should stop him!
    12. Re:Virii need cells by Rei · · Score: 1

      I'm something of a polymath :) I follow, in just as much depth, everything from nuclear power to rocketry. On this particular subject, I educated myself because a few years ago I used to debate origins online and wasn't about to show up to a battle of facts half-armed. ;) Ah, PubMed -- quite the valuable resource it was. Someone claims that evolution never produces more efficient enzymes? In a minute, I've pulled up and am reading "Single mutation at the intersubunit interface confers extra efficiency to Cu,Zn superoxide dimutase". :)

      --
      I was watching this thing on TV about some guy named Hitler. Someone should stop him!
    13. Re:Virii need cells by Pooua · · Score: 1

      >>If evolution has shown us anything, it is that *nothing* stays the same for long. Everything builds up on the scaffolding of something simpler, something that had a different purpose or even no purpose.>A basic statement of facts.

      No, it's a restatement of what you originally claimed, as if you are telling us something new. What do you think the word, "evolution" means? Stasis? No; it means "change." So, evolution isn't teaching us this; it is what the word means!

      >>Picture the humble BSE prion. A simple self-replicator > You're disagreeing with my statement, "a simple self-replicator"? Then you need to argue that it's neither simple nor does it self-replicate (replicate without the assistance of other molecules except inputs).

      I question your use of the term, "replicator." That would imply that it is alive, when that has not been demonstrated. "Copier" would be better.

      By itself, it doesn't do anything that any other protein would not do.

      Neither does DNA; it cannot replicate by itself.


      DNA contains a lot of information for self-repair and the assembly of components that are not DNA. A prion is just a mis-folded protein.

      An entire cell cannot replicate in a void; everything takes inputs. A self-replicator requires nothing else to help with the assembly, but still takes inputs. In the case of BSE, it requires a normal prion.

      I'm short on time, so I'll just cut to the heart of what has you confused. You think that the definition of life is, "That which replicates." You have one, now you have two, so they are alive. But, life is more than just multiplication. There is also response to environmental stimuli, particularly reponse to escape unfavorable environmental stimuli. A prion doesn't do this ... or, if you can show that it does, you will be on the cutting edge of science. There is no life cycle of a prion, beyond its formation and its destruction; it doesn't do anything. Even viruses do something more than replicate.

      --
      Taking stuff apart since 1969 (TM)
    14. Re:Virii need cells by Rei · · Score: 1

      No, it's a restatement of what you originally claimed, as if you are telling us something new.

      A) Where previously did I mention the concept of building off of a scaffolding?
      B) Where previously did I mention cooption?

      Given that was the main point of that line, I don't see how you could claim it was restatement.

      I question your use of the term, "replicator." That would imply that it is alive

      No, that would be the word "life". A replicator means something that replicates. It does not imply life, and it's silly to pretend it does. You're arguing against the dictionary about the meaning of words.

      "Copier" would be better.

      A "copier" is a term you just made up to mean what "replicator" already means. Pardon me if I don't adopt it.

      Neither does DNA; it cannot replicate by itself.

      DNA contains a lot of information for self-repair and the assembly of components that are not DNA.


      Non sequiteur. DNA still cannot replicate by itself.

      A prion is just a mis-folded protein.

      Which, as I stated from the very first post, can self replicate when given a single precise input. Nothing more, nothing less.

      I'm short on time, so I'll just cut to the heart of what has you confused. You think that the definition of life is, "That which replicates. You have one, now you have two, so they are alive. But, life is more than just multiplication. There is also response to environmental stimuli, particularly reponse to escape unfavorable environmental stimuli.

      And here we come to the heart of the problem. Nobody agrees what "life" is. I set the bound much lower than you because it's more clear-cut down there. Some virii don't respond to environmental stimuli, even to eject their RNA - when their capsid is dissolved, the RNA starts replicating immediately from available inputs. There are some which don't even have capsids, and simply replicate whenever their desired inputs get near them. Some are more complicated and contain bits of code to assist in their replication. Mimivirus is almost an independent organism. So, are some virii not alive and others alive? Or is mimivirus just a skip and a jump from being "alive"? And if a virus reenables or redevelops response mechanisms to meet your requirements, does it suddenly become "alive"? If so, abiogenesis occurs all the time.

      --
      I was watching this thing on TV about some guy named Hitler. Someone should stop him!
    15. Re:Virii need cells by Pooua · · Score: 1

      **No, it's a restatement of what you originally claimed, as if you are telling us something new.**

      A) Where previously did I mention the concept of building off of a scaffolding?
      B) Where previously did I mention cooption?

      Given that was the main point of that line, I don't see how you could claim it was restatement.


      Hey, if you don't want to admit that you used the word "evolution" in your fluff piece, that's fine by me.

      **I question your use of the term, "replicator." That would imply that it is alive

      No, that would be the word "life".


      You need to expand your vocabulary.

      A replicator means something that replicates. It does not imply life, and it's silly to pretend it does. You're arguing against the dictionary about the meaning of words.

      I can take a die punch and replicate a pattern on a sheet of metal. I can even get a machine that, for a time, will do the same thing automatically. But, if I told you that machine or punch did the replication on its own, you should wonder at my statement.

      **"Copier" would be better.**

      A "copier" is a term you just made up to mean what "replicator" already means. Pardon me if I don't adopt it.


      I can accept that; "copier" probably isn't a very good term for, anyway. After all, it isn't really doing anything more than contaminating a batch of proteins, by setting up a chain reaction.

      Neither does DNA; it cannot replicate by itself.

      **DNA contains a lot of information for self-repair and the assembly of components that are not DNA.**

      Non sequiteur.


      "It doesn't follow"? Well, tell me, then, what means the humble prion has for preserving its integrity?

      DNA still cannot replicate by itself.

      Now, it's after a statement like that where you should use the term, "non sequiteur." You are trying vigorously to argue that inanimate lumps are functionally equivalent to DNA. Oh, no doubt you will deny that, but that is what you are trying to do. For, when I pointed out that prions don't do any more than any other protein, you jumped to the point that bare DNA is not able to replicate, as if information content has no bearing.

      At least I see why you are so frustrated that the mass of the scientific community won't accept your views about DNA and RNA. You want to redefine life into the lowest possible terms, so that your evolutionary fairy tale will seem more likely. This is not unlike the constant attempts by evolutionists to portray the cell as a mere bag of chemicals. No one who could appreciate the complexity of life would believe that it could arise by chance.

      **A prion is just a mis-folded protein.**

      Which, as I stated from the very first post, can self replicate when given a single precise input. Nothing more, nothing less.


      Actually, you went a bit farther than that, with your proposed chemical evolutionary scenario leading to the first living cells. Even so, you shouldn't talk about the prion replicating when "given a single precise input." Prions are not computer programs; they aren't taking input and giving a repeatable output. Not every protein that a prion encounters will become deformed. And, your so-called "replication" of prions is nothing more than normal proteins switching to a defective folding pattern. There is nothing precise about it, and the mathematics you should be using is probability and statistics.

      **I'm short on time, so I'll just cut to the heart of what has you confused. You think that the definition of life is, "That which replicates. You have one, now you have two, so they are alive. But, life is more than just multiplication. There is also response to environmental stimuli, particularly reponse to escape unfavorable environmental stimuli.**

      And here we come to the heart of the problem. Nobody agrees what "life" is.


      Most people agree to a minimum set. Rocks, for example, are not alive, even though they can reproduce and grow, too. The key is r

      --
      Taking stuff apart since 1969 (TM)
    16. Re:Virii need cells by Rei · · Score: 1

      Hey, if you don't want to admit that you used the word "evolution" in your fluff piece, that's fine by me.

      Hey, if you don't want to admit that your insult was specious, that's fine by me as well.

      A replicator means something that replicates. It does not imply life, and it's silly to pretend it does. You're arguing against the dictionary about the meaning of words.

      I can take a die punch and replicate a pattern on a sheet of metal. I can even get a machine that, for a time, will do the same thing automatically. But, if I told you that machine or punch did the replication on its own, you should wonder at my statement.

      Oh, you have a machine that can, through a series of punches, make a brand new copy of itself on its own?! By all means, give me the details, I'll publish a paper! You'll make waves in the scientific community!

      "It doesn't follow"? Well, tell me, then, what means the humble prion has for preserving its integrity?

      DNA doesn't either by itself. If you had the entire human genome but nothing else, you could not create a new person. DNA only functions (including preserving its integrity) in its given environmental context.

      Now, it's after a statement like that where you should use the term, "non sequiteur." You are trying vigorously to argue that inanimate lumps are functionally equivalent to DNA.

      And you're trying to argue against the blatantly obvious fact that DNA does absolutely nothing except float along, react randomly, and eventually break apart without a support infrastructure. DNA, without a support infrastructure, IS inanimate.

      For, when I pointed out that prions don't do any more than any other protein, you jumped to the point that bare DNA is not able to replicate, as if information content has no bearing.

      Exactly! A prion does nothing except when provided inputs. DNA does nothing except when provided inputs *and* a support infrastructure. Thus, a prion is a self replicator, and DNA is not. What is hard about this for you to understand?

      At least I see why you are so frustrated that the mass of the scientific community won't accept your views about DNA and RNA.

      Point to a scientist who supports the contention that a prion is not a self replicator. The only contention of mine that isn't dominant is that original hypercycles could have been completely independent of DNA or RNA. And that's a widespread hypothesis, but just not a dominant one.

      You want to redefine life into the lowest possible terms, so that your evolutionary fairy tale will seem more likely.

      Go on. Address when a virus is alive. Is mimivirus? What if it made the tiny jump to independence? Are virii simpler than minivirus? You've dodged this issue long enough -- address it.

      This is not unlike the constant attempts by evolutionists to portray the cell as a mere bag of chemicals.

      My mistake. Cells are filled with magical pixies that flit about weaving spells, instead of being chemicals which interact through well understood chemical interactions.

      No one who could appreciate the complexity of life would believe that it could arise by chance.

      Nobody except the majority of biologists, that is.

      you shouldn't talk about the prion replicating when "given a single precise input." Prions are not computer programs; they aren't taking input and giving a repeatable output.

      Oh, it's repeatable all right -- just only a percentage of the time.

      And, your so-called "replication" of prions is nothing more than normal proteins switching to a defective folding pattern.

      Normal prion count-=1.
      BSE prion count +=1

      Result: Malformed prion encounters normal prion, deforms it into a malformed prion. Total of two malformed prions. This is replication, no matter how you put it. SunY replicates. Ghadiri replicates. All sorts of chemicals self-replicate. That doesn't meant that you have to call them "li

      --
      I was watching this thing on TV about some guy named Hitler. Someone should stop him!
  6. I see... by UberMench · · Score: 3, Funny

    So, Agent Smith was right, humans ARE a virus. Replicating and spreading, consuming everything in our path. Who says movies aren't educational?

    --
    If video games are created by teams of designers and artists, how are they not art??? www.skylarscaling.com
    1. Re:I see... by ultranova · · Score: 3, Interesting

      So, Agent Smith was right, humans ARE a virus. Replicating and spreading, consuming everything in our path. Who says movies aren't educational?

      Um, no. Viruses don't consume anything, since they don't have a metabolism. Agent Smith (and all the other agents too), on the other hand, uses human hosts to replicate, and is therefore a virus himself.

      --

      Forget magic. Any technology distinguishable from divine power is insufficiently advanced.

    2. Re:I see... by TheClam · · Score: 1

      I think you've been reading the textbook a little too literally. Where does the material to create new viruses come from, thin air? "Consuming" doesn't necessarily mean "eating with a mouth".

    3. Re:I see... by Anonymous Coward · · Score: 0

      First up the matrix was a movie. It's fake. There is no reason to be arguing about it. Secondly, you are completely wrong.
      Agent Smith (and all the other agents too), on the other hand, uses human hosts to replicate, and is therefore a virus himself.

      At no point do the "agents" use human hosts to replicate. Maybe you are thinking of the movie Alien? The Agents have the ability to jump into and out of almost any virtual body inside of the matrix. They are nothing more than the computers projection of an agent into the matrix, just as the "people" in the matrix are nothing more than their own projections of themselves into the matrix.
      And what Agent Smith was referring to when calling humans viruses is that they don't exist in equilibrium with their environment. They consume and consume and consume until the host dies, at which time they themselves die or transfer to a new host. Teraforming other planets to colonize? More like spreading the worst "virus" to ever hit the planet Terra.

  7. Aptly named... by PhrostyMcByte · · Score: 1

    Obviously the guys who named it watched The Drew Carey Show.

  8. Uh by hexghost · · Score: 3, Interesting

    "In the discussions of intelligent design, one hears a yearning for an old-fashioned creation story, in which some singular, inchoate entity stepped in to give rise to complex life-forms--humans in particular."
    Actually, I just hear a bunch of idiots trying to take a fable from 2 thousand years ago and use it to explain things in place of modern science.

    1. Re:Uh by Anonymous Coward · · Score: 0

      DOH! Really showed us idiots there. Thanks for the intellectual debate.

    2. Re:Uh by Anonymous Coward · · Score: 0

      Wow, way to start some stuff. You know that it's a bad idea to be controversial these days. Besides that, there's still questions neither religion nor science can answer. Until it's final, keep your opinions to yourself.

    3. Re:Uh by Anonymous Coward · · Score: 0

      If nothing else, just the fact that a 2000 years old fable still has such an effect is quite remarkable among all achievements by the human mind.

    4. Re:Uh by Anonymous Coward · · Score: 0

      Actually, I just hear a bunch of idiots trying to take a fable from 2 thousand years ago and use it to explain things in place of modern science.

      Hear hear!

    5. Re:Uh by operagost · · Score: 1

      To what fable, apparently created in 6 C.E., are you referring?

      --

      Gamingmuseum.com: Give your 3D accelerator a rest.
    6. Re:Uh by Flaming+Death · · Score: 1

      Crikey.. who knew there were that many Anon Cowards that even cared..

    7. Re:Uh by dancpsu · · Score: 1

      Well, there are quite a few creation stories, mostly with indeterminate authoring dates. I don't think the GP narrowed it down much at all.

      --
      "Scientists don't change their minds, they just die." -- Max Planck
    8. Re:Uh by Blowfly(a-z) · · Score: 1

      It's been evident to me for some time, that creationism is born from fear of mature personal responsibility. By this I mean that; in order to support the myth that there is some higher power than yourself (which I do buy), which has paternal/maternal responsibility over you (which is crap), there is a requirement that the believer take in wholesale all of the associated claptrap that comes with it, namely the creation myth. When you tie that with the need to control people for your aggrandizement, you get the enormous amount of spew that comes from that camp.

      The reality is that evolution is a fact, we can see it happening everyday, as viruses and bacteria become resistant or mutate into new species in response to their environment (that's what biological evolution is). Sometimes I think the problem is one of definition; in astronomy, evolution is the process of stars progressing from birth through death, but in biology the term is not the same. Darwin actually avoided this term, calling it natural selection, as he knew what evolution actually meant.

      Any other argument in scientific literature on the subject is only about mechanism, whether it's Darwinian, or Cataclysm theory or whatever. These are all theory, which is not the colloquial meaning (like "guess"), but the scientific definition which is more like; we're 99.9% sure, we just need to tweak the last 0.1%.

      I really hope these people grow up someday, but I likely won't happen anytime soon.

    9. Re:Uh by Bryansix · · Score: 1

      Mod Parent -1 Flaimbait

      Not only is the post plain wrong; it attacks the views of others in an illogical way. Intelligent Design theory does not promote one "designer" over another. See the FAQ page on the Discover Institutes website for clarification. http://www.discovery.org/csc/topQuestions.php

      And I quote: 3. Is intelligent design based on the Bible?

      No. The intellectual roots of intelligent design theory are varied. Plato and Aristotle both articulated early versions of design theory, as did virtually all of the founders of modern science. Indeed, most scientists until the latter part of the nineteenth century accepted some form of intelligent design. The scientific community largely rejected design in the early twentieth century after neo-Darwinism claimed to be able to explain the emergence of biological complexity through the unintelligent process of natural selection acting on random mutations. During the past decade, however, new research and discoveries in such fields as physics, cosmology, biochemistry, genetics, and paleontology have caused a growing number of scientists and science theorists to question neo-Darwinism and propose design as the best explanation for the existence of specified complexity in the natural world.

    10. Re:Uh by i8puppies · · Score: 0

      That's no acheivement, man. That's something to be downright ashamed of.

    11. Re:Uh by failure-man · · Score: 1

      You might even say that creationism, or perhaps religion itself, is a bit like a virus.
       
      Idiots believe it, spread it to other idiots and to their own stupid children. Faced with a hostile environment (ie science proving it's bunk) it adapts to a form better able to survive.
       
      (I'm joking, but only half . . . . . . )

    12. Re:Uh by Rei · · Score: 1

      And naturally, it's not like it's almost exclusively Conservative Christians who are promoting it, some of whom used to promote Creationism but switched when the courts ruled that it was simply an attempt to get the Bible into classrooms and was unconstitutional.

      --
      I was watching this thing on TV about some guy named Hitler. Someone should stop him!
    13. Re:Uh by Anonymous Coward · · Score: 0

      Don't worry. You can join us if you want to.

    14. Re:Uh by HrothgarReborn · · Score: 1

      Actually, I just hear a bunch of idiots trying to take a fable from 2 thousand years ago and use it to explain things in place of modern science.

      Well, first its a myth not a fable. The concept of fables was a much later literary development. and second, it's much older than 2000 years. I mean that would put it only back as far the time of the second temple (or time of Christ). Tradition holds Moses penned it almost 4000 years ago. Of course the text itself implies it occurred about 6,000 years ago. Most textual critics would relate portions of the creation story (there are actually two creations stories back to back with significant contradictions between them. Second story starts about Genesis 2:2) as being of a very ancient origin. We have significant parent sources from mesopotamia relgions dating back to nearly 4,000 BCE.

      Like it or not its part of the literary and cultural heritage that makes us who we are as much as these single celled organisms are a part of who we are. I think you should embrace it and be proud of it rather than trying to marginalize it or think you are above being connected to it or you are a hypocrite.

    15. Re:Uh by Anonymous Coward · · Score: 0

      That's as much as you deserve, because you are an idiot.

    16. Re:Uh by Anonymous Coward · · Score: 0

      One might call that a meme.

    17. Re:Uh by Krach42 · · Score: 1

      Well, there are quite a few creation stories, mostly with indeterminate authoring dates. I don't think the GP narrowed it down much at all.

      Especially, when the most significant creation story used by people believing in Intelligent Design comes from Moses, who was around about 2 thousand years before Jesus, who was 2 thousand years old.

      Of course, I personally believe that if the Pope says Intelligent Design is bullshit, and his job essentially REQUIRES belief in God, that it's good enough to me... (and I'm not even Catholic).

      --

      I am unamerican, and proud of it!
    18. Re:Uh by Britz · · Score: 1

      I am sure the poster doesn't give damn about who he promoted over what. I think what he had in mind was what every other sane person who has had enough of this crap has in mind. Intelligent design is a little bs which got multiplied so much that it really stinks by now.

    19. Re:Uh by iamlucky13 · · Score: 1

      Whew...you barely save yourself with your disclaimer at the end.

      As far as science proving Creation is bunk though, it hasn't and it can't. No matter what mechanism you come up with for the evolution of the universe, you never scientifically find a means that necessarily exludes God from creating it and not being bound by its laws. It's kind of an interesting property of omnipotence. Of course, neither do I expect to see science proving the existence of God. For that and various theological reasons, intelligent design is empty, but the loosely associated idea of Creation is not.

    20. Re:Uh by aborchers · · Score: 1

      "These are all theory, which is not the colloquial meaning (like "guess"), but the scientific definition which is more like; we're 99.9% sure, we just need to tweak the last 0.1%."

      No, that is not the scientific definition of a theory. In fact, it's not even close.

      Start here:

      http://dictionary.reference.com/search?q=theory

      --
      Trouble making decisions? Just flip for it.
    21. Re:Uh by Anonymous Coward · · Score: 0

      Actually, I just hear a bunch of idiots trying to take a fable from 2 thousand years ago and use it to explain things in place of modern science.

      This from a biblical scholar no doubt.

    22. Re:Uh by boingo82 · · Score: 1
      As far as science proving Creation is bunk though, it hasn't and it can't. No matter what mechanism you come up with for the evolution of the universe, you never scientifically find a means that necessarily exludes God from creating it and not being bound by its laws.

      In fact, that's what makes Creationism utter bunk as a theory. In order to be considered valid, a theory must be disprovable.

      From wikipedia:
      ..A theory which is not refutable by any conceivable event is non-scientific. Irrefutability is not a virtue of a theory (as people often think) but a vice.

      --
      As a republican I feel it my responsibity to manufacture criminals. People need punished!
    23. Re:Uh by ChildeRoland · · Score: 1

      How is evolution disprovable?

      --
      The mark of a mature person is not creating arbitrary criteria for considering others mature.
    24. Re:Uh by Blowfly(a-z) · · Score: 1

      Sorry that I wasn't precise here, I was trying to present the spirit of what it takes for a statement to go from hypothesis to theory in science practice. Also, none of the definitions you provide were really in the realm of what scientific theory represents, see http://en.wikipedia.org/wiki/Theory for a solid explanation.

      Also, I was trying to convey some of the difference between theory from hypothesis (observation) and from conjecture (swag), which often seems to be the source of much of creationist argument and it's difference from science.

    25. Re:Uh by hunterx11 · · Score: 1
      Intelligent Design theory does not promote one "designer" over another.

      This is a bold-faced lie. There is nothing more to it. "Intelligent Design" was created with the explicit purpose of advancing the position of Judeo-Christian belief in American public schools. Yes, teleological philosophy existed before it, but Behe didn't just discover the works of Paley one day. Intelligent Design is Creationism in disguise. To say otherwise is to be uninformed (which is usually the case), or a liar (in the case of the members of the Discovery Institute).

      --
      English is easier said than done.
    26. Re:Uh by fimbulvetr · · Score: 1

      Proud of the fact that we can make up lies that last many thousands of years and fool most of our civilization because it fills the the gap of intelligence/logic with some incessant babbling?
      Proud of the fact that a huge majority of recorded murders/wars can be attributed to religion and beliefs?

      Hah. Proud - that'll be the day.

    27. Re:Uh by Floody · · Score: 2, Interesting
      How is evolution disprovable?


      The following thought experiment will help you to understand the principle of falsibility:

      In the not-so-distant future, a team of archaeologists discovers a giant underground complex filled with technology significantly more advanced than any known to modern man. Radiometric isotope analysis seems to indicate the structure is at least a few hundred million years old. Further study of the various discovered technologies reveals an astoundingly complete map of all genomes currently known to exist as well as those belonging to species which have recently become extinct and a vast array of genetic information that does not appear correlated to any known living organism.

      After an appropriate period of analysis, debate and extensive verification during which no potential fraud is discovered, science discards the theory of evolution as previously known, as it has become quite logically obvious that an external intelligent force played a major role in the development of life on earth as we know it. Science would not need to immediately understand all of this newly discovered technology in order to revise or discard previous theories and move forward.

      The purpose of this thought experiment was to demonstrate a logical scenario that would lead to the "disproving of evolution" (at least in terms of fitness adaptation in the past few hundred million years).

      Can you concoct a similar scenario whereby, through the discovery of evidence, it can be proved that an Intelligent Designer was not responsible for life on earth? Or even a scenario which can disprove the involvement of a supreme being in geologically recent speciation?
    28. Re:Uh by ChildeRoland · · Score: 1

      How would that disprove evolution? We still wouldn't know where those creatures came from.

      --
      The mark of a mature person is not creating arbitrary criteria for considering others mature.
    29. Re:Uh by arminw · · Score: 1

      ......The reality is that evolution is a fact, we can see it happening everyday, as viruses and bacteria become resistant or mutate into new species in response to their environment (that's what biological evolution is)......

      Evolution has never been duplicated in a lab. Adaptation of moths or bacteria to environmental stress is not evolution. The only science that is TRUE science is experimental science. The origin of life itself cannot be shown experimentally. Nobody has ever taken any mixture of all 92 elements, none of which have ever been part of something alive, and created any life. Using chemicals that had been part of a living organism does not make life from non-life. Even making a self sustaining living cell out of a mixture of amino acids have never been done in a lab. Let someone actually MAKE even a simple virus from scratch and then maybe the speculation can be called science.

      Evolution tries to apply to living systems what applies nowhere else -- namely that systems left to themselves become more complex, rather than breaking down into simpler components.

      Evolution teaches that over large spans of time, simple cells evolved into complex animals -- even eventually humans. No experiment has ever been done to prove even the smallest link in such an amazing chain of events. No assembly of individual parts, whether living or not, has ever been made into a complex functioning system without the instructions needed to do so.

      Evolutionists try to convince us and themselves, that complex living structures, such as brains, eyes, ears, circulatory systems all came into being without detailed instructions and knowledge of how put them all together. Hemoglobin molecules are very complex structures that have a very precise arrangements of atoms.

      Evolution claims that the complex arises from the simple. Entropy says the opposite, that complex things break down into their simpler parts. So which theory is correct? We observe the effects of entropy every day, but not the opposite, evolution.

      Evolution and ID are philosophical or religious notions of how things came to be, but are not science, since neither have been nor can be demonstrated or refuted by experiment. Experiments or observations of the great adaptability of organisms do not demonstrate true Darwinian evolution as commonly preached in our classrooms today. The whole concept of man having crawled out of the primal ooze is a figment of scientific philosophers imagination. No experiment has EVER been done to demonstrate even ONE of the many steps along the way.

      --
      All theory is gray
    30. Re:Uh by arminw · · Score: 1

      ....."Intelligent Design" was created with the explicit purpose of advancing the position of Judeo-Christian belief in American public schools......

      Evolution attempts to explain origins apart from the activity of mind. It is at a loss to determine where the tremendous amount of information implied in highly ordered living systems comes from. It is like finding a computer with complex programs inside and not wishing to acknowledge the existence of programmers. To make a complex system from simpler parts always requires energy and more importantly, some information on exactly where and how this energy needs to be applied in order to achieve the more complex system. Nobody denies that all human creative activity first arises in a human mind. All the complex gadgets we use today came to be by processes of thought in a human mind. Why then is it so unreasonable to theorize that the unimaginably more complex structures and systems we see in nature also first arose in a mind, one far greater than any human mind?

      Evolution not science, but philosophy. You can hold whatever philosophical or religious position you wish, just don't call any of these science. Neither ID nor the mindless evolution theory have been tested by experiments however. Science is done ONLY by experiments to reveal TRUTH. Evolution, ID, creationism are conjectures to which varying numbers of people subscribe. Just because some of these people who believe a particular conjecture are labeled "scientists", does not make them so. Both theories should be taught in a philosophy or religion class, because neither is science.

      --
      All theory is gray
    31. Re:Uh by Shihar · · Score: 1

      Like it or not its part of the literary and cultural heritage that makes us who we are as much as these single celled organisms are a part of who we are. I think you should embrace it and be proud of it rather than trying to marginalize it or think you are above being connected to it or you are a hypocrite.

      Like it or not, slavery, discrimination, and whole sale genocide is part of the cultural heritage of almost every single civilization as well. That goes double and triple for ancient civilizations. I am more then happy to acknowledge those facts, but you better believe I will merrily try and marginalize them in modern society. Just because something is apart of our cultural heritage doesn't mean that it should be revered; and it certainly doesn't mean that it should play any role in science.

      No one has an issue with looking back on history and studying the crazy things we used to believe in or even acknowledging the things that people still believe in. That said our mysticism, alive and kicking or long since dead, has no place in science. It has a place in cultural and historical studies, not in a discussion around science.

      Until ID zealots can meet even the most basic criteria to have their mysticism (and it is by definition mysticism) considered science, they absolutely should be ignored as the agenda pushing zealots that they are. They should be treated roughly like the drunk bum on the side of the street raving about the stars aligning to bring about the end of the world... they should be flatly ignored.

    32. Re:Uh by hunterx11 · · Score: 1
      Both theories should be taught in a philosophy or religion class, because neither is science.

      There aren't two theories here. There is a theory (with which you are clearly unfamiliar) and an unfalsifiable pseudoscience (with which I hope you are unfamiliar). For future reference, try bringing up the argument of the watchmaker--it's more fleshed out than your presentation of irreducible complexity.

      --
      English is easier said than done.
    33. Re:Uh by scbysnx · · Score: 1

      thank you for being the only person on this site with half a brain thank you so much

    34. Re:Uh by Anonymous Coward · · Score: 0
      I cannot figure out if you're lying or just plain stupidly repeating nonsense you read somewhere. It is probably the last because, for all the untruths you're spouting here, it's also incoherent.

      Oh, and whenever someone mentions "entropy" in a discussion about evolution you know they're just an idiot with a list of anti-evolution bookmarks.

    35. Re:Uh by dhoonlee · · Score: 1

      Evolution doesn't address the origin of life, only the way it changes and takes new forms.

    36. Re:Uh by Richard_at_work · · Score: 1

      But where does the Intelligent Designer come from? Thats the crux of the matter, you dont 'prove' anything by claiming Intelligent Design, you just move the buck up one more level. At some point you are going to have to sit back and think about HOW LIFE ORIGINATED, not just lay the blame on a higher entity and consider the matter closed.

    37. Re:Uh by bani · · Score: 3, Insightful

      problems.

      1) we know life to be several billion years old, a few hundred million is a mere fraction of that.
      2) a plausible explanation: the complex was merely a laboratory for extraterrestrial scientists who were visiting earth, studying the genomes of life on various planets in the universe.

      do i get a cookie?

    38. Re:Uh by Richard_at_work · · Score: 1

      Im sorry, but 'modern science' has only been around for ... ooh around 400 years or so. The Earths ecosystem has 4.5billion years on us, please tell me how you intend to conduct experiments that require long time periods in a human lifetime?

      By putting a higher entity into the equation, you are only moving the problem one step higher in a hierachy - how did that entity come about? This is why ID is so pointless (in my opinion), it doesnt answer the question! It doesnt even come close.

    39. Re:Uh by FooBarWidget · · Score: 1

      Intelligent design and evolution are not mutually exclusive. Even if life was once designed, evolution is still possible. Evolution means that, through genetic mutations, the best adapted individuals survive and pass their genes on to the next generation. When done often enough, the species can become dramatically different from the original. Genetic mutation is well-known and is a proven phenomenom.

    40. Re:Uh by StrawberryFrog · · Score: 1

      Can you concoct a similar scenario whereby, through the discovery of evidence, it can be proved that an Intelligent Designer was not responsible for life on earth?

      Yes. All you'd need is evidence of stupid design like oh, the human appendix and the mamalian eye for starters.

      --

      My Karma: ran over your Dogma
      StrawberryFrog

    41. Re:Uh by arminw · · Score: 1

      ....Im sorry, but 'modern science' has only been around for ... ooh around 400 years or so.....

      Exactly true. Before experimental science was born, philosophers had all sorts of theories about the world we live in. Most of them were disproved by experiments, often at great cost, to the early brave souls who went against the prevailing wisdom.

      Because evolution nor ID cannot be verified by modern experimental methods, neither are science. Evolutionists always bring up the subject of time, lots of it when confronted with the fact that nobody has demonstrated or observed evolution happening today.

      What other widely held theories of science are there, besides evolution and ID and other origin conjectures, that do not have even ONE experiment to prove their main assertions? A theory that cannot be ultimately be proved in the laboratory is only a belief system. I happen to BELIEVE in a transcendent Creator God as the originator of all things. You happen to believe something else. However, unlike REAL science, neither your belief concerning origins nor mine has been proved true or false by countless experiments, such as is the case in true science. Therefore, both your and my beliefs should be discussed in a philosophy or religion class, but not as science.

      --
      All theory is gray
    42. Re:Uh by turnipsatemybaby · · Score: 1

      "Evolution has never been duplicated in a lab. Adaptation of moths or bacteria to environmental stress is not evolution."

      You just proved how utterly ignorant you are, right from the very beginning of your post.

      Evolution IS the adaptation of life due to environmental stress. Or at least, it is a significant factor. And even then, this is still a gross simplification of what evolution actually is. But then again, if you're refusing to believe that basic fact, then obviously you're going to think that evolution is just another religion.

      Nice easy example: Take two hares, one white, and one brown, and plonk them in the middle of a snowfield.

      Take a wild guess which one blends in, and which one sticks out like a sore thumb. Needless to say the brown hair will get eaten long before the white one, and the white one has an infinitely higher chance of surviving long enough to procreate. The organism that does a better job of surviving is the one that procreates. It's as simple as that.

      And I'm not even going to touch on your misguided use of basic principles of physics to explain biology. The logic is so flawed I don't know where to begin.

      I think what bothers me the most is that ignorant people like you are doing everything in their power to destroy science. You pervert the concept of theory. At the institutional level you force scientists to alter results to suit your preconcieved notions. It's disgusting.

    43. Re:Uh by noahm · · Score: 1
      Can you concoct a similar scenario whereby, through the discovery of evidence, it can be proved that an Intelligent Designer was not responsible for life on earth? Or even a scenario which can disprove the involvement of a supreme being in geologically recent speciation?

      No. And that is why ID is not science and has no place in science classrooms.

      noah

    44. Re:Uh by Anonymous Coward · · Score: 0

      Yes. All you'd need is evidence of stupid design like oh, the human appendix and the mamalian eye for starters.

      Devil's Advocate:
      Code reuse combined with a tight delivery schedule could account for suboptimal design elements. Nothing in the "theory" states that the Intelligent Designer had to be a perfectionist or even really all that good at his job.

      That's the elegant beauty of intelligent design as an obfuscatory argument. All it does is say, "Nuh-uh!" to evolution (or at least to evolution without a guiding force). You can only disprove certain creationist scenarios but not the whole of ID.

    45. Re:Uh by iamlucky13 · · Score: 2, Interesting

      I suspect we're on the same wavelength here, but I'll say it anyway. Creationism is not a scientific theory, which is part of the problem I, a devout Catholic, have with Intelligent Design.

      My bigger problem is the fact that, as a theological concept, ID is empty and vain. It attempts to promote the idea that we are created by God, without any desire to learn more. That defeats the purpose of theology (theo-logos: knowing God). Given that ID fits neither science nor theology (does not directly address how, does not ask why), it is vain to promote it in either field. If people really think religion should be discussed in public schools, and I personally do think it should, the best place is as a general overview in the context of either social studies or philosophy. Ultimately, though, the school is not the place for evangelization.

    46. Re:Uh by arminw · · Score: 1

      ....The organism that does a better job of surviving is the one that procreates. It's as simple as that......

      I call that adaptation, but if you want to call it evolution, that's OK. I have no quarrel at all with the idea that organisms that can better adapt to environmental changes. How does the fact that e-coli or moths or rabbits or you name it are able to ensure survival of its group, prove the heart of evolutionary dogma?

      What is NOT proven is how this relates to a single cell organism evolving into an exceedingly complex system of cells, such as a human body? How can any conceivable collection of 92 chemical elements create a single cell or even a virus? Do an experiment to show this and you will win the Nobel Prize.

      Survival of the fittest is a fact, but that doesn't show us how simple systems become more complex. This progression from simplicity to complexity is postulated in no other idea of science EXCEPT evolutionary dogma. In ALL other sciences it is experimentally possible to show that complex systems break down into simpler parts as time goes forward. That's why that part of evolution is not science, but belief.

      --
      All theory is gray
    47. Re:Uh by Doug97 · · Score: 1

      "Can you concoct a similar scenario whereby, through the discovery of evidence, it can be proved that an Intelligent Designer was not responsible for life on earth? Or even a scenario which can disprove the involvement of a supreme being in geologically recent speciation?" Dear Humans, I had nothing to do with starting life on Earth, Your sincerely, God

    48. Re:Uh by Bryansix · · Score: 1

      Evolution not science, but philosophy. You can hold whatever philosophical or religious position you wish, just don't call any of these science. Neither ID nor the mindless evolution theory have been tested by experiments however. Science is done ONLY by experiments to reveal TRUTH. Evolution, ID, creationism are conjectures to which varying numbers of people subscribe. Just because some of these people who believe a particular conjecture are labeled "scientists", does not make them so. Both theories should be taught in a philosophy or religion class, because neither is science.

      I agree 100%

    49. Re:Uh by aborchers · · Score: 1

      I certainly don't disagree with your assessment of the Creationist abuse of the term theory. I do, however, think that American Heritage #1 entry for theory is perfectly adequate to represent scientific theories. The duty of a dictionary isn't the same as that of an encyclopaedia.

      I just meant to point out that theories aren't 0.01% or 99.99% or 100.0% or any other percentage correct. They're just falsifiable models. I'm unaware of any theory for which anyone can claim 100% correctness, only efficacy and unfalsifiability.

      --
      Trouble making decisions? Just flip for it.
  9. It's the same thing in the computer world... by ArsenneLupin · · Score: 2, Funny

    ... if it weren't for the viruses, nobody would see any reason to ditch Windows and evolve!

    1. Re:It's the same thing in the computer world... by Afecks · · Score: 1

      Yea it would suck if you had to learn how to properly secure your computer.

  10. Hah! by Anonymous Coward · · Score: 0

    A scientist says that they might have to rethink viruses! You scientists and your "facts."

    In other news, the captcha was blacks. Props to GNAA?

  11. promiscuous Mimi by larry_larry · · Score: 1

    "Discover magazine tells of a recently discovered gigantic virus, Mimivirus..."

    I knew Mimi was promiscuous. Yep, she gets around and likely has several viruses and bacterium... but I didn't know she had a virus named after her.

    1. Re:promiscuous Mimi by The+Thinnest+Tie · · Score: 1

      I wasn't sure about the promiscuous part, but I was aware that she is gigantic.

      --
      There are 10 kinds of people in the world: That's approximately 11000100101100100000000100000000 of each kind.
  12. Why mention intelligent design? by Arandir · · Score: 2, Insightful

    Is objectivity dead? Is it possible for scientists to publish their findings WITHOUT stooping to the level of mockery?

    --
    A Government Is a Body of People, Usually Notably Ungoverned
    1. Re:Why mention intelligent design? by Anonymous Coward · · Score: 0

      They are doing whatever it takes to get their ideas/thoughts/research into widespread recognition. Recognition brings in money.

    2. Re:Why mention intelligent design? by zardo · · Score: 1

      These days you have to sell science like any other media.

    3. Re:Why mention intelligent design? by professionalfurryele · · Score: 1

      Hey if your discipline was under constant attack by people who want to undermine you and the society you live in, you would take every chance you get to point out what utter barsteds they are too.

    4. Re:Why mention intelligent design? by PFI_Optix · · Score: 1

      I remember a college textbook that went out of its way to attack creationism several times. That's just brilliant. Every time a scientist/wannabe scientist takes a jab at religion, it fuels the rabid creationists who view science as being antagonistic.

      --
      120 characters for a sig? That's bloody useless.
    5. Re:Why mention intelligent design? by Threni · · Score: 1

      Who cares what creationists think? It's not a problem outside the USA, and even there it's not really a problem - just something smart people find funny about the way stupid people think.

    6. Re:Why mention intelligent design? by Anonymous Coward · · Score: 0

      We already tried ignoring religion and going about our business. Now science is under attack, people are still hating and killing over religion, and religion is still being used to teach people not to think, examine evidence, or question authority. Maybe it's time to get antagonistic and talk some sense into the fence sitters. They're the ones who make the really crazy religionists seem credible.

    7. Re:Why mention intelligent design? by Reality+Master+101 · · Score: 1
      Is objectivity dead? Is it possible for scientists to publish their findings WITHOUT stooping to the level of mockery?

      I agree. It just gives power to the creationists. Do astronomers feel the need to attack flat-earthers every time they make an announcement?

      The best way to fight them is to ignore them, unless they go out of their way to push their beliefs on others through legislations or in the schools.

      --
      Sometimes it's best to just let stupid people be stupid.
    8. Re:Why mention intelligent design? by Keebler71 · · Score: 1

      It's called trolling... and it sometimes happens in the stories or summaries themselves and not only in the comments. Sadly, we can't moderator the articles...

      --
      "It takes considerable knowledge just to realize the extent of your own ignorance." - Thomas Sowell
    9. Re:Why mention intelligent design? by DogDude · · Score: 0

      I couldn't agree more. Even mentioning Creationism gives it some kind of credibility. True scientists (people who observe facts as opposed to fairy tales) should just ignore the ignorant masses. A paper/article/whatever talking about evolution, that mentions Creation, is like a biology textbook explaining seed germination, and contrasting it to the "Jack and the Beanstalk" story. Creationism has nothing to do with evolution, natural selection, or any kind of facts, and thus should not be treated as such.

      --
      I don't respond to AC's.
    10. Re:Why mention intelligent design? by Anonymous Coward · · Score: 0

      It is not attacking religion. It is attacking illogical thoughts in religion. Keep in mind that science does not preclude God. In fact, many scientists find God in science. But the problem is that a very small group in religion has gone over the edge and now pushes total crap. So it is only the fringe that is being attacked.

    11. Re:Why mention intelligent design? by bobscealy · · Score: 1

      Why mention intelligent design? Simple. To provide the numb masses with something that will spark thier interest for a second or two and provide some good publicity for your school/institution/whatever. Send out a press release full of shop talk and there will be howling wolves and tumbleweed, but send out a press release that links your research to some hot topic, no matter how weakly, and you will catch the odd fish.

    12. Re:Why mention intelligent design? by DogDude · · Score: 1

      unless they go out of their way to push their beliefs on others through legislations or in the schools.

      And once they do that, it's time to start rounding them up, and making soylent green!

      --
      I don't respond to AC's.
    13. Re:Why mention intelligent design? by Anonymous Coward · · Score: 0

      You really don't pay attention to the news, do you?

      And besides, they started it.... :)

    14. Re:Why mention intelligent design? by dancpsu · · Score: 1

      Who cares what creationists think?

      Apparently the writers of the GP's college science text.

      --
      "Scientists don't change their minds, they just die." -- Max Planck
    15. Re:Why mention intelligent design? by hamburger+lady · · Score: 1

      flat-earthers aren't getting school boards to mandate the flat-earth hypothesis be taught in science classes. if they were, you bet you'd see the same sort of thing in articles by astronomers.

      --

      ---
      Is this the MPAA? Is this the RIAA? Is this the DMCA? I thought it was the USA!
    16. Re:Why mention intelligent design? by dancpsu · · Score: 1

      Why would science care if people are hating and killing over religion? And there are dozens of examples where different science disciplines have taught people to not think, examine evidence or question authority--the Eugenics movement comes to mind. Each professor/researcher who wants to keep his funding/tenure/reputation has his own agenda in mind, and the scientific community often falls into camps when the evidence is not clear--as is true with abiogenesis.

      And before you think that science should muck around in religion's territory, do a careful watch of What the Bleep to find out how religion could use science to push its own agenda.

      --
      "Scientists don't change their minds, they just die." -- Max Planck
    17. Re:Why mention intelligent design? by horatio · · Score: 1

      Who cares what creationists think? ...it's not really a problem - just something smart people find funny about the way stupid people think.

      There's a good way to convince others you're right - by hurling insults at anyone who doesn't think like you do. Your argument for evolution and against intelligent design/creationism seems pretty simple:

      A) all creationists are stupid
      B) all non-creationists are smart

      Therefore, there is no reason to engage the issue or even bother to make a case for your point of view. That isn't very open-minded and tolerant of you, is it? Shallow and narrow-minded people debase those who disagree with them because they're too lazy to form a coherent argument.

      Those that you mock are the same ones that you have to convince that there is nothing bigger than us (God, Allah, a Supreme Being, the creepy Burger King clown, etc) if you want to eliminate spirituality from schools, government, public life, and then completely. Those "stupid people" still get to vote. If you plan to actually win the argument, consider convincing others with valid and thoughtful evidence, rather than invectives. Who knows, maybe you'll learn something in the process.

      Aristotle didn't score points by calling anyone "stupid".

      --
      There is very little future in being right when your boss is wrong.
    18. Re:Why mention intelligent design? by Anonymous Coward · · Score: 0

      Dude hey... Intelligent Design is the cover story for this months issue. Pay attention.

    19. Re:Why mention intelligent design? by inode_buddha · · Score: 1
      "Is objectivity dead?"

      Was objectivity ever truly possible?

      --
      C|N>K
    20. Re:Why mention intelligent design? by Arandir · · Score: 1

      The best solution is to institute a separation of school and state. Creationists shouldn't be forcing their beliefs upon your children, but neither should you be forcing your beliefs upon theirs. But as long as the government forcibly extracts taxation for the purpose of universal uniform education, the majority is going to tyrannize the minority's children.

      But of course, that idea is even more controversial than creationism! It's now taken for granted that remote bureaucrats in Washington DC know much more about the needs of our children than we ourselves do.

      --
      A Government Is a Body of People, Usually Notably Ungoverned
    21. Re:Why mention intelligent design? by Natholin · · Score: 1

      I personally do not see where evolution goes against religion or vice versa.
      To me if God has the power to create all; then it seems to me he also has the wisdom to build the laws, and very basics that the universe is driven with, and that also includes evolution.
      IMHO any one group who spits on the other is an idiot.
      We have such a short time on earth why not explore all ends instead of just a narrow path.
      Honestly it would not hurt to open your mind a little and try to see things from different points of view.
      Sadly most people do not understand one side or the other and those same people try to destroy what they do not understand.
      The way I look at it is if I am right Cool, if I am wrong, well it did not hurt anyone; if anything it made me a better person to be around.
      Though it is amazing both sides of this argument seem to have there fair share of the blind faithful who do not ask questions but instead just believe; being no different than the other.

    22. Re:Why mention intelligent design? by MadUndergrad · · Score: 1
      While I agree with the general point of your post, I'd like to point out that there's a distinction to be made between religion and spirituality. Religion is generally considered to be organized, and usually has set dogma that the followers of that religion (are supposed to) believe. Spirituality is much more amorphous, and much more individual.

      Another distinction: there is a legal seperation of church (ie religion) and state. I couldn't name you a single place or institution in this country in which spirituality is banned.

    23. Re:Why mention intelligent design? by ultranova · · Score: 1

      Who cares what creationists think? It's not a problem outside the USA, and even there it's not really a problem - just something smart people find funny about the way stupid people think.

      If you ridicule everyone who disagrees with a theory you subscribe to, I must conclude that there is more than disagreement about facts at stake from your side. Since you are reacting emotionally and quite childishly to people who attack your theory, I must wonder if you aren't too attached to it to think objectively about it. And if you can't think about it objectively, why should you receive the limited research funds, as opposed to someone who can ?

      Besides, if you ridicule and viciously attack everyone who you disagree with, they will likely pay you back if your theory is ever shown wrong. Given that, might you not be inclined to not take evidence against your theory as seriously as you should ?

      Science is the search for truth, or at least facts. Getting emotionally attached to theories, hypothesis and claims is a hinderance to it. Insulting people breeds this kind of attachment, in both the receiver and giver of the insult. Such behavior perverts science and shows the people engaging in such behavior as immature brats. It also makes it less likely that any future controversial theory (such as the theory of evolution at the time it was conceived) will be brought to public knowledge, since the inventor of such a theory will rightly fear being ridiculed by his peers instead of having his claims rationally examined.

      --

      Forget magic. Any technology distinguishable from divine power is insufficiently advanced.

    24. Re:Why mention intelligent design? by xombo · · Score: 1

      How is it that not wanting to believe in a creator is being narrow minded, while believing in one and not wanting to delve deeper is considered "open minded." I feel like your argument is just another intelligent designists last-ditch efford to stick "God" into an otherwise godless universe.

    25. Re:Why mention intelligent design? by Anonymous Coward · · Score: 0
      Two things:
      1. As far as I can tell, scientists did not mention intelligent design. Discover magazine did. Discover magazine is a news source which writes up scientific news for a popular audience. Discover even at their best has a heavy slant toward entertainment over utility, and at Discover's worst I have seen them engage in some very poor fact-checking standards. They are not to be confused with the scientists they report on and you should not expect anything other than popular pandering from them.
         
      2. Intelligent design as a movement is highly relevant to discussions of the origins of life. This article directly addresses the question of origins of life, and in particular attempts to map out details about the shadowy period when cellular structures first emerged. If you will read the actual article, you will see intelligent design is brought up not for purposes of "mockery", but for purposes of discussing how this new virus theory is directly relevant to the claims and aspirations of the intelligent design movement. As the article notes, if it could be demonstrated that the cellular nucleus is just a heavily jury-rigged virus chassis, this would present something of a serious blow to the IDC movement's claim that cellular structures are in fact specifically and detectably hand-designed as structures by an intelligent being.
    26. Re:Why mention intelligent design? by MadUndergrad · · Score: 1

      I truly pity those people who are indoctrinated with creationism as children. Many of them never seem to be able to let the light of reason and logical thought shine through the dense forest of religious dogma and blind faith. But that's just me.

    27. Re:Why mention intelligent design? by Bazzalisk · · Score: 1
      No disagreement here.

      I don't believe in a god exactly, but the god I don't believe in is certainly smart enough tro construct the universe as a beautiful system or interlocking laws and processes :)

      "Remmember it was with will and not hands that the all-creator made the all-encompassing world" - The Corpus Hermeticum.

      --
      James P. Barrett
    28. Re:Why mention intelligent design? by dancpsu · · Score: 1

      A) all creationists are stupid
      B) all non-creationists are smart


      It's the classic political argument! We have found the root of the debate and it is politics. On each side of political issues there is inevitably a calling into question of the opposite side's intelligence, while there is a bolstering of the intelligence of the same side. The Bush is dumb line is now classic, but people on the opposite side said the same thing about presidents through the latter half of last century. Other than stupid and dumb, there is "brainwashed", "lemmings", "morons", etc. and phrases meaning the same thing. Anyone following the same side is hailed ironically as an "independent thinker", "resolute", "above average", etc. Usually there is also a random person who believes in some mishmash of the two sides who believes he is right because he isn't "stooping to their level" while in effect alienating both sides and creating a new smaller side that the other two can crush. Just look at how third parties are faring in the US federal gov't.

      This fits the creation/evolution debate very well, as it does Republicans/Democrats, abortion, capital punishment, gun control, religious involvement in government, Linux/Windows, Vi/Emacs, etc. Although I think the reason why these attacks come about is because both sides are no longer listening to reason.

      If the creepy Burger-King mascot is the supreme being, then we're all doomed.

      --
      "Scientists don't change their minds, they just die." -- Max Planck
    29. Re:Why mention intelligent design? by Anonymous Coward · · Score: 0

      evolution is anti-religious to a lot of people because it means they aren't super-duper special in GOD's eyes. It means they weren't created in his/her/its image and we aren't the end all be all center of the entire reason for the universe existing. Basically they need something to make them feel special and evolution ruins that for a lot of people.

      Speaking of God creating the rules of the universe have you ever played the PC game "Messiah"? In the game scientist discover that there is a GOD and SHE did create the universe and all the rules that govern it. Because the univers is goverened by these rules so is God and they figure out that they can control God through these rules, so god sends this angel/messenger to earth to stop them and you play this angel. Fun game.

    30. Re:Why mention intelligent design? by ceoyoyo · · Score: 1

      Discover isn't a place where scientists publish their work. Discover goes out and interviews scientists and then has one of their writers write an article.

    31. Re:Why mention intelligent design? by Reality+Master+101 · · Score: 1
      Creationists shouldn't be forcing their beliefs upon your children, but neither should you be forcing your beliefs upon theirs.

      That's what private religious schools are for. If someone wants an edited version of knowledge taught to their children, then that's where to go.

      But if kids go to a state-sponsored school, then they will be taught knowledge as close to unfiltered by ignorant people as possible. Granted, this isn't always attainable by normal human beings, but evolution is absolute scientific fact.

      --
      Sometimes it's best to just let stupid people be stupid.
    32. Re:Why mention intelligent design? by Hal_Porter · · Score: 1

      I think both sides are talking about aspects of the same thing.

      I'm a firm believer in evolution, as a way to go from the total simplicity of a sterile abiotic planet to the complexity we know see. Evolution is an essentially blind, unconcious process. But it's amazing how perfect the organisms it creates are. When you read about moths living in cold climates with heat exchangers to transfer heat from their warm exhaled air to their cold inhaled air, or HIV which actually seems to benefit from having a really error prone system to copy it's RNA, you realise that evolution does a perfect job at engineering. Much better than human engineers could do, despite the fact that we're conscious and it's not.

      Compare this to God. God, at least the Christian one is omnipotent and omniscient. I reckon that combination precludes consciousness, and it sounds to me like a kind of intelligence that is much more like evolution than a single human engineer.

      Actually, once you have a company full of human engineers, much of the changes they make are not that much better than random mutations. They tend to join a project late, way after the people that understood the whole thing have left, and make changes without really understanding why they worked. That's the smart ones, the dumb ones keep insisting their changes work long after the customer has threatened to sue.

      The problem with the Christian version of God is that people see it as a conscious entity. If they could live with God being the unconcious intelligence that builds perfect organisms, or the elegance of the underlying physics once we have a GUT, then they wouldn't spend time arguing about it.

      Actually, physics itself, if you view the whole process rather than individual scientists seems to be more of an evolutionary process than the result of anyone seeing the big picture. So once again you have a group of conscious people working, but the process will outlive any of them, and so can't have any goals that exceed an individual physicist's lifetime. So physics itself is not conscious, but it will certainly produce a GUT given time.

      But the people that believe in evolution insist that it's not intelligent, and the people that believe in God insist on a version of God that predates science. And if either side talked about calmly, they'd realise that the other side's ideas are not as unacceptable as they think.

      --
      echo -e 'global _start\n _start:\n mov eax, 2\n int 80h\n jmp _start' > a.asm; nasm a.asm -f elf; ld a.o -o a;
    33. Re:Why mention intelligent design? by Arandir · · Score: 1

      That's what private religious schools are for.

      Yet they still pay for the state schools through taxation. It would be a much smaller problem if there were educational tax credits (a much different thing than vouchers), so that people don't have to pay taxes to state schools when they send their children to private schools.

      but evolution is absolute scientific fact.

      That itself is a statement of faith. The original theory by Darwin has itself been replaced by more modern versions. What gives you faith that the theory is now inerrant? What makes you think it might not be further altered and modified based on future discoveries?

      That some process we would call "evolution" accounts for the diversity of species is highly probable, it is stupidly dogmatic to consider the current theories of evolution being taught in schools to be "absolute scientific fact".

      --
      A Government Is a Body of People, Usually Notably Ungoverned
    34. Re:Why mention intelligent design? by bishop32x · · Score: 1

      except washington isn't forcing your children to learn anything, all curiculum is implemented on local or state levels. Stop blamng the federal Government.

    35. Re:Why mention intelligent design? by Reality+Master+101 · · Score: 1
      so that people don't have to pay taxes to state schools when they send their children to private schools.

      Well, there I'm with you. I'm totally in favor of allowing parents to choose their schools, as long as there is a reasonable baseline of education (and evolution isn't that important to me that every school has to teach it).

      That some process we would call "evolution" accounts for the diversity of species is highly probable, it is stupidly dogmatic to consider the current theories of evolution being taught in schools to be "absolute scientific fact".

      I said evolution was absolute fact. Of course, the myriad details of any theory are subject to refinement as we learn more. Just because we refine the details of the various processes by which evolution happens doesn't cast doubt on the fact of evolution.

      --
      Sometimes it's best to just let stupid people be stupid.
    36. Re:Why mention intelligent design? by Natholin · · Score: 1

      You obviously did not read what I wrote. You are entitled to your thoughts and I mine. Um there is one small part that you left out. I attributed this flaw to both sides. Also I did not say you had to believe in a creator, just said that IMHO by not even giving any thought to it makes you closed minded. (Again this is for both parties; those who believe and those who do not. Also IMO it makes you a blind follower. Do not get me wrong I am not saying it means you are less; it is just me pointing out that that is what it is, and that I personally do not subscribe to that way of thinking.

    37. Re:Why mention intelligent design? by Natholin · · Score: 1

      No I have not played it, but i will see about tring it out. "evolution is anti-religious to a lot of people because it means they aren't super-duper special in GOD's eyes. It means they weren't created in his/her/its image and we aren't the end all be all center of the entire reason for the universe existing. Basically they need something to make them feel special and evolution ruins that for a lot of people." I think you are correct in this statement, and I think it can be applied to both sides.

    38. Re:Why mention intelligent design? by Nuclear+Elephant · · Score: 1

      flat-earthers aren't getting school boards to mandate the flat-earth hypothesis be taught in science classes.

      That's because this hypothesis is still being presented along with the looming debate of the time, and much scientific reasoning to support the alternative theory that the earth is round. Rather than do this with creationism, it's much less work to just sweep it under the rug and not present it at all so that they can just program evolution into kids rather than teach anything.

    39. Re:Why mention intelligent design? by seven7h · · Score: 0

      I think that evolution does actually undermine my religion of christianity, but not in the way some say (ie we are not the most important etc). If evolution was true it would mean that there was death and sufferent before people existed. They way that the bible states it is that there was no death or suffering before people came into the world, this was only introduced when sin came into the world.
      So if there was death before humans were in the world this would mean that there was sin before people, and so no reason for sin and no reason for anybody to end up going to hell, thus undermining a large chuck of my religion.
      I am not opposed to evolution simply for this reason but I believe that, based on the facts that I know, evolution requires as much faith if not more than creation.

    40. Re:Why mention intelligent design? by DogDude · · Score: 1

      but neither should you be forcing your beliefs upon theirs

      Whoa, whoa, whoa. Creationism is a "Belief". There are no facts behind it, and it is a fictional story. Evolution and natural selection aren't "Beliefs". They're as close to scientific fact as we're going to get. I think that the state SHOULD force children to learn scientific FACTS. It's irrelevant that some inbred religious nuts wants to call them "Beliefs".

      --
      I don't respond to AC's.
    41. Re:Why mention intelligent design? by mfrank · · Score: 1

      Uh, when they teach children about how people used to believe the world was flat, it's in the context of "this is what people used to believe before they figured out what it was *really* like". If they want to teach creationism the same way, I have no problem with it. Although I imagine a lot of people will.

      If you post a response, please include non-idiotic evidence for ID. To prevent wasting my time with crap like "it violates entropy" or "irreducible complexity", please check out talkorigins first to see if any argument you plan on presenting hasn't already been thoroughly refuted. After all, unlike you, I'm going to cease to exist when I die so I really don't like wasting time wrestling with pigs.

    42. Re:Why mention intelligent design? by Arandir · · Score: 1

      I think that the state SHOULD force children...

      Regardless of what comes after the ellipses, it is the statement above which is the core of my contention. The state should NOT be forcing your children to do anything. I realize that this is a difficult concept for soem of you, but the state has no right to you children (or you for that matter).

      --
      A Government Is a Body of People, Usually Notably Ungoverned
    43. Re:Why mention intelligent design? by Arandir · · Score: 1

      I'm not solely blaming the federal government (such as the "No Student Left Behind"), but rather the federal AND state governments. Personally I'm not too thrilled with the local county and city government control over education either, but am willing to concede it on pragmatic grounds.

      --
      A Government Is a Body of People, Usually Notably Ungoverned
    44. Re:Why mention intelligent design? by Arandir · · Score: 1

      I said evolution was absolute fact.

      But it is NOT absolute fact! Look up the word "fact". Fact is data and evidence, not the theories to explain the data and evidence. Evolution is still a theory, and is thus an explanation and model. It is no more factual than Newton's Theory of Gravity.

      --
      A Government Is a Body of People, Usually Notably Ungoverned
    45. Re:Why mention intelligent design? by Reality+Master+101 · · Score: 1
      But it is NOT absolute fact! Look up the word "fact"

      You're using a childish definition of "fact", meaning "zero doubt". Nothing is "zero doubt", except your own existence. In the real world, we use the word "fact" to mean something that has no reasonable doubt, and is there is ZERO reasonable doubt about evolution, hence it is a fact.

      Bringing up Newton's laws of gravity is interesting. You do realize that Newton didn't go out the window when Einstein refined the theory, right? Physicists and engineers still use newtonian physics. It's only flaw is that it doesn't represent the entire picture, just as certain tenants of evolution may not fully represent the entire picture.

      Arguing that evolution is not a fact is like arguing that the earth isn't really round because it's slightly egg-shaped. The world will still never be flat.

      --
      Sometimes it's best to just let stupid people be stupid.
    46. Re:Why mention intelligent design? by Anonymous Coward · · Score: 0

      Yeah, I've seen it, and I was disgusted.

    47. Re:Why mention intelligent design? by Arandir · · Score: 1

      Yet you used the word "absolute." Really you did. Honest. Go read your own post if you don't believe me.

      --
      A Government Is a Body of People, Usually Notably Ungoverned
    48. Re:Why mention intelligent design? by Reality+Master+101 · · Score: 1
      Yet you used the word "absolute." Really you did. Honest. Go read your own post if you don't believe me.

      Yes, I did. So what? I'm assuming that people reading are smart enough to figure out that I'm not philosophically comparing the certainty of evolution to one's own existence. For all practical purposes (such as the probability of being found to be "false"), evolution is absolute fact.

      --
      Sometimes it's best to just let stupid people be stupid.
    49. Re:Why mention intelligent design? by Arandir · · Score: 1

      Sigh. You did it again. You used the phrase "absolute fact". Please get a dictionary.

      --
      A Government Is a Body of People, Usually Notably Ungoverned
    50. Re:Why mention intelligent design? by Reality+Master+101 · · Score: 1
      Sigh. You did it again. You used the phrase "absolute fact". Please get a dictionary.

      My dictionary works fine, thank you. I suggest you take a Philosophy 101 class. You'll find all sorts of youngin's interested along with you in microdefining words into uselessness. For most of us, that concept lost its novelty long ago. ("Hyuk! Hyuk! You said 'absolutely'!! You did!! You did! Bwahahahahah! I WINNNNNNNNN!!!")

      --
      Sometimes it's best to just let stupid people be stupid.
    51. Re:Why mention intelligent design? by Threni · · Score: 1

      > Since you are reacting emotionally and quite childishly to people who attack
      > your theory, I must wonder if you aren't too attached to it to think objectively
      > about it.

      I'm not reacting emotionally. I just think "Intelligent Design" is a stupid idea. Just because it's associated with religious people rather than, say, criminals, the mentally ill etc makes no difference to me. An idea stands on it's own merits. It's a stupid idea, and consequently it's only taken seriously by stupid people, or people who haven't thought about it critically. I'm not sure where you're getting the idea that I give a shit what people think about it, or my opinions, either way.

      > Getting emotionally attached to theories, hypothesis and claims is a hinderance
      > to it.

      I'm a programmer. I've read a few books related to evolution; I check out talk.origins, I've seen a couple of episodes of Dawkin's "the root of all evil". I find it an interesting topic but I'm not obsessed with the subject and I'm certainly no expert. But it would appear that it's not people who believe in the theory of evolution who are emotional, or emotionally attached to anything, but rather people who object that their illogical belief-system cannot come up with any credible criticism of the theory, and instead opt for a laughable half-way house - sort of like accepting that, OK, the sun doesn't revolve around the earth, but all the other planets do.

      > It also makes it less likely that any future controversial theory (such as the
      > theory of evolution at the time it was conceived) will be brought to public
      > knowledge, since the inventor of such a theory will rightly fear being
      > ridiculed by his peers instead of having his claims rationally examined.

      I don't think attacking moronic ideas makes attacks on other moronic ideas less likely - surely the opposite is more likely to be the case, as people see less and less reason to stifle common sense in the face of feckless goons who unquestioning parrot the same crap their parents taught them. But that's just my opinion.

    52. Re:Why mention intelligent design? by Copid · · Score: 1
      Regardless of what comes after the ellipses, it is the statement above which is the core of my contention. The state should NOT be forcing your children to do anything. I realize that this is a difficult concept for soem of you, but the state has no right to you children (or you for that matter).
      Doesn't that assume that your rights as a parent trump the child's rights in all cases? If I decide that my child should not learn to read, write, or do basic arithmetic until he's 18, should that be tolerated? We could go back to the days of young children going to work in factories because it was more profitable for the family in the short term than forcing an education down their throats. I'm not sure that would be quite the utopia some seem to think it was, though.
      --
      An interesting anagram of "BANACH TARSKI" is "BANACH TARSKI BANACH TARSKI"
  13. Watch me predict the future... by MudButt · · Score: 1

    The the debate over evolution... BEGIN!

    1. Re:Watch me predict the future... by Anonymous Coward · · Score: 0

      YOU FAILED

  14. Striking news? Here's some striking news: by Anonymous+Crowhead · · Score: 1

    Nothing will change ID people's minds. Nothing. Ever. This is interesting news, but it's not going to make a bit of difference to ID people. So why bother blathering on about it in an article?

    1. Re:Striking news? Here's some striking news: by abscissa · · Score: 1

      Now that I think about it... you're right!! I have spontanously switched sides.

      The fact that debate on Slashdot has not evloved seems to be evidence for ID... unless some otherworldly puppetmaster father-figure intervenes, then we will perpetually live in darkness and front page stories about evolution will be posted day after day with first posts that can be summarized as: "Then why don't monkeys evolve today? why did they suddenly stop evolving!11!!?? do you think your uncle is a monkey???"

    2. Re:Striking news? Here's some striking news: by Dunbal · · Score: 1

      Nothing will change ID people's minds. Nothing. Ever.

            I find your lack of faith in the Flying Spaghetti Monster disturbing. The ID people are merely being tolerated for now, but when He wishes to turn them into Sauce with His Noodly Appendage, He will do so. This is all part of His Plan.

      --
      Seven puppies were harmed during the making of this post.
    3. Re:Striking news? Here's some striking news: by middlemen · · Score: 1

      Yes, He is just waiting to insert His Noodly Appendage into their intelligently designed ass.

    4. Re:Striking news? Here's some striking news: by CrankyOldBastard · · Score: 2, Interesting
      I've found that you can get ID people to come to some kind of sense by simply demonstrating to them that ID is contrary to scripture, and requires a God who is not omniscient nor omnipotent, and (which is the clincher) makes errors.

      Now these people will tend to go back to hard-core creationism once they realise ID is a crock, but that is better than that horror mix of mythology and pseudo-science called ID. Pure Theology wins against ID every time in my opinion, as at least it is internally consistent, and doesn't try to deceive and pervert.

      I had the displeasure of sitting through a seminar by some ID people the other week. The demonstrations, which were prepared by "PhD Biologists" had all kinds of factual errors, lies-by-ommision and misdirection. There is no way that I can accept that God's Message is spread by the deliberate use of lies, so I have to come to the conclusion that the ID people (and the publishers of "Creation" magazine) are doing the work of someone other than God as I know him.

      I know many Christians who believe that ID is probably some kind of scheme to erode Christian values, as well as to make Christians seem ridiculous and hence to invalidate their other statements. I can't say that's my view, but it is that of many.

    5. Re:Striking news? Here's some striking news: by cagle_.25 · · Score: 1

      Which conference, which biologists? Just curious.

      --
      Human being (n.): A genetically human, genetically distinct, functioning organism.
    6. Re:Striking news? Here's some striking news: by CrankyOldBastard · · Score: 1
      It was Gary Bates doing his travelling show spruiking his book "Alien Invasion: the Link between Evolution and the UFO Controversy" (I may have the title wrong!).

      I saw him at the Parkwood Church of Christ on a Wednesday night about 2 weeks ago. He's part of the team that publishes "Creation" magazine.

    7. Re:Striking news? Here's some striking news: by CrankyOldBastard · · Score: 1
      If anyone is interested, here's one of the really nasty "errors", and what's really worrying, what the typical response to it was...

      We start with 2 dogs, these dogs have a short hair gene (h) and a long haired gene(H), so both dogs have [hH] genes. Supposedly this means they have "medium length" hair (it was actually like "obviously they will have medium length hair")

      Now these two dogs breed and have the typical Mendelian proportions of offspring:

      [hh], [hH], [hH], [HH]

      Along comes the ice age, and as a result all except the long haired dog ([HH]) die off, so now all dogs have [HH] genes!

      See? Natural Selection means a loss of information! How can new species eveolve if the amount of information is decreasing?

      On pointing out to Gary Bates that that isnt actually how it works (there's all sorts of problems, not the least being: Dominance/recessive relations, the risk of homozygous re-inforcement of negative traits, the existance of other genes and alleles that will favour shorter hair resulting in a more diverse mix, the likelihood that in other regions short genes will survive to mix back into the long hairs after the Ice Age passes - you can add your own I'm sure!), he admited that it was "simplified for the un-educated" but that it had been put together by "two PhD Biologists in Brisbane".

      Now I have a problem with believeing that any PhD Biologist with a degree from a reputable school would make such a model and say it's indicative of how it works, unless they deliberately decided to "neglect" to mention all sorts of issues that are covered in High School.

      And here's the real danger these people pose! My Pastor, Shane, didnt appreciate me pointing out the errors in the hairy dog model. "It's what I remember from High School" he said. Other people around him agreed. Yes, he remembered the picture of Mendelian Inheritance, but he didnt recall the correct interpretation (and probably never did understand it). As a result he sees a picture that IS familiar, and accepts the psuedo-science bull that goes with it.

    8. Re:Striking news? Here's some striking news: by cagle_.25 · · Score: 1
      My Pastor, Shane, didnt appreciate me pointing out the errors in the hairy dog model. "It's what I remember from High School" he said. Other people around him agreed.

      Bummer, dude. It's discouraging when you're put in the position of being either (a) a heretic, or (b) unable to reconcile seemingly obviously false stuff.

      --
      Human being (n.): A genetically human, genetically distinct, functioning organism.
    9. Re:Striking news? Here's some striking news: by Anonymous Coward · · Score: 0

      The solution is obvious. If the pastor has no clue, and all the other religious people have no clue or are liars then perhaps religion isn't really all that great. Let go of it.

  15. Wait a second by zardo · · Score: 1

    Don't viruses depend on life to reproduce? Seems like viruses must have been a side effect of celled organisms.

    1. Re:Wait a second by SyvanX · · Score: 1

      I noticed that too. I think the article should read

      multi-cellular life

      Instead of All, since viruses need a host to replicate in, and the article summary even says they could be the reason that life progressed past single cellular organisms.

    2. Re:Wait a second by afaik_ianal · · Score: 1

      Seems like viruses must have been a side effect of celled organisms.

      I've actually wondered about this many times before (my knowlege of viruses was, and still is pretty weak [IANAB], but it doesn't stop me from pondering such things).

      Viruses (generally?) need other organisms to allow them to reproduce. Is it possible that viruses are not just a contiguous family as such, but splintered sub-families; fragmented siblings of the organisms they invade? I can imagine a cell breaking down after death, and a mutation of a piece of DNA or RNA forming a virus. What better host for such a virus than the organism it was based on? I'm not sure if that is even plausible, but it's an interesting idea IMO. If my idea were correct, then viruses could have evolved from many points in the tree of life.

      Also, it is believed that evolution has occured in fits and bounds in the past, right? Is it possible that these evolutionary accelerations are related to the times when viruses have become successful? I suppose that any rapid change in environment will accelerate evolution, but viruses could be one of those factors.

      Just a thought...

    3. Re:Wait a second by bfioca · · Score: 1
      From TFA:

      "It is a difficult concept to get one's head around. Parasites, to us, are derivative, necessarily descendant from the biological entities they depend on for life. But simple does not always mean less evolved. Mimi's outsize complement of genes--so large that the virus is tantalizingly close to being an independent organism--suggest to many scientists that Mimivirus underwent reductive evolution early on and shed some of its genome, including the genes necessary to replicate on its own."

      "The implications of that finding are truly radical: that Mimi, or a Mimi-like ancestor, emerged prior to the three other domains and played a key role in inventing the very cells of which humans and all complex cellular life-forms are made."

    4. Re:Wait a second by Kelson · · Score: 1

      Don't viruses depend on life to reproduce? Seems like viruses must have been a side effect of celled organisms.

      That's been the consensus up until now. The article is about some scientists rethinking that interpretation based on new evidence. I could summarize, but you'd probably get more out of just reading the article.

    5. Re:Wait a second by Nuclear+Elephant · · Score: 1

      That's been the consensus up until now. The article is about some scientists rethinking that interpretation based on new evidence.

      For crying out loud, they found the stupid thing inside a host!

  16. Not correct by Anonymous Coward · · Score: 0

    They aren't saying viruses are the precursors of all life. They're saying viruses are the precursursors of cellular nuclei. It would be far from correct to say that all life has cellular nuclei.

  17. Re:beleive what you want... by Anonymous Coward · · Score: 0

    The above post was a very, very bad idea.

  18. Not this crap again... by Digital+Vomit · · Score: 2, Insightful
    "The cover story for this month's Discover magazine tells of a recently discovered gigantic virus, Mimivirus, that has blurred the lines between viruses and bacteria, and spurred speculation that viruses could be the reason life evolved past single-celled organisms." From the article: "This is striking news, especially at a moment when the basic facts of origins and evolution seem to have fallen under a shroud. In the discussions of intelligent design, one hears a yearning for an old-fashioned creation story, in which some singular, inchoate entity stepped in to give rise to complex life-forms--humans in particular. "

    Talk about a flamebait article. The two concepts are not mutually exclusive, and there is absolutely no reason to mention the latter except to stir up controversy and hatred. And with an article title like "Unintelligent Design", it's a safe bet this is what the writer was after. Good jorb, Mr. Charles Siebert of Discover.com.

    --
    Modern copyright is theft of culture from everyone and it retards the progress of the useful arts and sciences.
    1. Re:Not this crap again... by TheZax · · Score: 1

      Talk about a flamebait article. The two concepts are not mutually exclusive...


      As has been mentioned here before, Evolution and ID are mutually exclusive. The basic line of ID is that Evolution is impossible, so it must have been a higher being. If you are going to input on this topic, I suggest you have a basic understanding of the issue.


      --

      JWall: GUI client for IPTables
    2. Re:Not this crap again... by Kelson · · Score: 1

      More precisely, evolution and intelligent design are mutually exclusive*, but evolution and a divine creation are not.

      As you said, a key point of ID is that certain structures cannot have evolved naturally. However, since evolution explains how life changes, not how it began, it does not contradict the possibility that a divine being linked some chemicals together a few billion years ago and got the ball rolling.

      And since evolution doesn't say anything about the origin of the world or universe (aside from requiring a long time to work, but the time it needs is consistent with geological and astronomical evidence), it doesn't contradict the possibility of a divine being creating the universe. Heck, even the big bang theory doesn't contradict this possibility, which makes it awfully strange that so many people reject it on the basis of religion.

      Evolution does, however, contradict a literal reading of the book of Genesis and "young-Earth" creationism. But then, so does intelligent design!

      *As I understand it, ID allows for natural selection, but rejects the idea that it can fully explain the variety of life as we know it today, relegating it from the primary mechanism of speciation to an also-ran.

  19. AI missing ingredient by msbmsb · · Score: 1

    So that's what the AI researchers have been missing all along: some big virus to generate the Big AI?

    1. Re:AI missing ingredient by Amouth · · Score: 1

      just what we need.. some random ball of crazy code to go in and mess with the the interworking bits and distroy each and every cell it can ..... wait.. i think Sony might have something there with the PS3

      --
      '...if only "Jumping to a Conclusion" was an event in the Olympics.'
    2. Re:AI missing ingredient by Dunbal · · Score: 1

      i think Sony might have something there with the PS3

            I was in "biochemist" mode and actually read PS3 as p53 but wait, you might have a point there, hehehe... the p53 is a tumor suppressor gene and when it mutates, bad things happen (ie cancer). Maybe Sony is trying to tell us something about their "rootkit".

      --
      Seven puppies were harmed during the making of this post.
  20. Re:beleive what you want... by Anonymous Coward · · Score: 0

    No, but one might BELIEVE in the non-EXISTENCE of God until HE BLOODY WELL SHOWS UP or teaches his followers how to spell!

  21. Re:beleive what you want... by Anonymous Coward · · Score: 0

    And an all powerful, invisible being who created us from nothing is more probable than random chemical reactions?

  22. Submitter misplaced the focus... by wanerious · · Score: 2, Interesting

    Yeah, it's too bad the focus of the submitter was on the Intelligent Design snippet --- probably the least interesting bit in the article. The most fascinating stuff to a non-specialist like me was the complexity in the genetic code. Much more complex, I gather, than other members of the virus family so far discovered, and in fact sharing some genetic coding with "higher" animals? Wow --- that kind of thing really illusrates what makes science so fascinating.

    1. Re:Submitter misplaced the focus... by caffeination · · Score: 1

      A submitter misplacing the focus? Why? To grab the editors' attention as they scan the submissions list? Does this mean that editors look for key topics that they know are popular here? What's with all these questions? Who am I? King Questionnaire? What kind of a stupid name is that anyway? Why won't you people leave me alone? Stop emailing these pages to my browser? Wait that wasn't a question? Now what's happening?

    2. Re:Submitter misplaced the focus... by steveha · · Score: 2, Informative

      it's too bad the focus of the submitter was on the Intelligent Design snippet

      Hi, I'm steveha. The submitter.

      Please read this:

      http://slashdot.org/comments.pl?sid=178821&cid=148 22486

      steveha

      --
      lf(1): it's like ls(1) but sorts filenames by extension, tersely
    3. Re:Submitter misplaced the focus... by wanerious · · Score: 1

      Yep, you're right, steveha. I didn't see the second set of quotes --- sorry for attributing that to you. Thanks for pointing that out.

  23. Are we then waging a war against our ancestors... by Anonymous Coward · · Score: 0

    Be friendly to the H5N1 viruses then. They are our ancestors.

  24. Discussion? by msbsod · · Score: 4, Interesting

    What discussion? The whole topic of creationism/intelligent design is only being discussed in the US. The problem is that we have too many unteachable people in the US who take every nonsense for granted as soon as it gets the religious smoke screen. And the media in the US love this topic because it allows them to spread their pitiful program 24*7. Not only scientists, but also almost the entire world have put this "discussion" to rest. If you find it mentioned in European media, then only with reference to the difficulties in the US. This is not a discussion. It is comedy.

    1. Re:Discussion? by JabberWokky · · Score: 1
      It's only really being discussed in United States media. It's not even a real issue in schools (although it kind of sounds like it is, there's no actual ID classes being taught outside of private parochial schools despite various proposals). It's not like US scientists are suddenly debating Intelligent Design as a serious topic.

      The "debate" is really just a method to sell newspapers and attract news show audiences. It will last until another very loud, vocal fringe group is found, especially if that fringe group's members can do something showy like sponsor a bill or shoot someone. That new topic will be equally non-relevent in reality... and will draw in more media consumers.

      The Intellectual Design "debate" is as relevant to society as much as Tom Cruise's dating habits or who was voted off American Idol last week. They are all "issues" of the same urgency and fed by the same advertising and rating driven loop.

      --
      Evan

      --
      "$30 for the One True Ring. $10 each additional ring!" -- JRR "Bob" Tolkien
    2. Re:Discussion? by ghislain_leblanc · · Score: 1

      Even here in Canada. I heard I.D. mentionned in the news a total of TWO times, and it was about it making the news in the U.S. In fact, if it was not for slashdot, I wouldn't even know there is a debate going in over there! I find it rediculous, most USians do too, aparently. I think it's a shame that it had to come down to this but it's hard to take any christian seriously when I hear stuff like that.

      I know it's just a crazy few who give the others a bad name, just like a few crazy muslims go out and burn down a KFC because of a joke. Can't people see what irrational thinking leads to? Where is this going to stop? I used to think science would put an end to religious rivalery: we have a better explanation to pretty much everything that religions try to "explain". I'm still hoping that in another twenty year, people will ba able to live the fact that someday, they will die, disgusting worms will eat their bowels, a tree will grow out of it, and apples too, circle of life! It's obvious to anyone thinking clearly. If it can make some people feel better about themselves to think that maybe, something else awaits them (free virgins in paradise), well, actually I wish I believed in something; life would be easier if I could base my choices on WWJD.

      Anyway, back to my point, good old darwinism will take care of all this: the best "theory" will win in the long run and people will stop petty arguments about it.

    3. Re:Discussion? by Stiletto · · Score: 1, Insightful


      Keep saying this. Keep laughing at this "debate" and dismissing it as the work of a few religious whackos.

      Meanwhile, these religious whackos are getting elected to school boards and other forms of local government at an incredible pace. They are patient, organized, and willing to wait decades to reach thier goal of enacting strict religious law within our country. They are working the schools now because they know they need to mold these next generations into the kind of society that will willingly accept a Taliban-like USA.

      Make no mistake. These people are playing hardball--the scientific community must play their game at the political level or lose it.

    4. Re:Discussion? by glwtta · · Score: 1
      It's only really being discussed in United States media. It's not even a real issue in schools

      I am taking a university-level evolutionary biology class right now; they just changed the syllabus last week to add a class that deals with this nonsense. Sure no one there takes it seriously, but there's still time spent talking about it, which in itself is just plain sad.

      --
      sic transit gloria mundi
    5. Re:Discussion? by Anonymous Coward · · Score: 0

      Although it is mostly true what you write, in the Netherlands we actually also have a (good) physicist trying to push this "theory" (another example of how it's never biologists pushing it). And our minister of education is on record as saying that she believed there was some truth to ID --- much hilarity ensued.

    6. Re:Discussion? by glwtta · · Score: 1
      I find it rediculous, most USians do too, aparently.

      If only that were true. Apparently some polls show pretty consistently, that about 10-15% of Americans think evolution is likely to be the explanation for the origin of humans; whereas about 40% take a literal reading of Biblical creation and the rest believe that evolution is directly guided by god.

      I don't know how reliable this data is, I've seen a few similar studies from Gallup a couple of time, but nothing would make me happier than if someone can point me to a thorough debunking, because this makes me rather terrified.

      --
      sic transit gloria mundi
    7. Re:Discussion? by cheesygrapes · · Score: 1

      There are public schools that teach creationism in many parts of the country. Just because it is unconstitutional doesn't mean it doesn't happen.

    8. Re:Discussion? by Prince+Vegeta+SSJ4 · · Score: 1

      is that "their pitiful program 24*7", or their pitiful program "24" 7

    9. Re:Discussion? by Thing+1 · · Score: 1
      I'm not convinced (although I am afraid and believe that the fuckers are as zealous as you say).

      Why? The other day someone mentioned here, wrt GTA, that "gamers will be voters in 10 years or so."

      I'm not sure the fuckers can brainwash everyone; at least, not without hardware assistance.

      --
      I feel fantastic, and I'm still alive.
    10. Re:Discussion? by ScrewMaster · · Score: 1

      Don't worry, there's no debate down here either. Just a bunch of ignorant squeaking wheels fueled by an equally ignorant and sensationalist media. Most of us just try to ignore the whole thing.

      --
      The higher the technology, the sharper that two-edged sword.
    11. Re:Discussion? by Redwin · · Score: 1

      I don't know how reliable this data is, I've seen a few similar studies from Gallup a couple of time, but nothing would make me happier than if someone can point me to a thorough debunking, because this makes me rather terrified.

      From Yes Prime Minister

      Sir Humphrey Appleby: Mr. Woolley, are you worried about the rise in crime among teenagers?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Do you think there is lack of discipline and vigorous training in our Comprehensive Schools?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Do you think young people welcome some structure and leadership in their lives?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Do they respond to a challenge?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Might you be in favour of reintroducing National Service?
      Bernard Woolley: Er, I might be.
      Sir Humphrey Appleby: Yes or no?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Of course, after all you've said you can't say no to that. On the other hand, the surveys can reach opposite conclusions.
      [survey two]
      Sir Humphrey Appleby: Mr. Woolley, are you worried about the danger of war?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Are you unhappy about the growth of armaments?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Do you think there's a danger in giving young people guns and teaching them how to kill?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Do you think it's wrong to force people to take arms against their will?
      Bernard Woolley: Yes.
      Sir Humphrey Appleby: Would you oppose the reintroduction of conscription?
      Bernard Woolley: Yes.
      [does a double-take]
      Sir Humphrey Appleby: There you are, Bernard. The perfectly balanced sample.

      I'm sure if you word the polls properly you could create virtually any data you wish to show, I know someone on /. posted an evolution vs ID version of the Yes Prime Minister conversation, but I can't find it at the mo.

      --
      Warning, comments may not have been passed by the sanity department of my brain.
    12. Re:Discussion? by meringuoid · · Score: 1
      Anyway, back to my point, good old darwinism will take care of all this: the best "theory" will win in the long run and people will stop petty arguments about it.

      Note, however, that the meme that succeeds in this Darwinian struggle need not be the better meme in the scientific sense. Success for a meme consists of infecting as many minds as possible, not in accurately describing the real world.

      That's the reason that scientific education is so important. It's not really about cramming kids' heads with facts, about propagating memes at them, but about implanting the underlying meta-meme: the notion that all ideas should be tested to compare them against the real world. Science is a colossal selective-breeding programme conducted upon memes, to artificially select the memes that best describe the real world. Left to themselves, humans will believe all kinds of rubbish, and will tend to believe whatever makes them feel good about themselves.

      "Man's unfailing capacity to believe what he prefers to be true, rather than what the evidence shows to be likely and possible, has always astounded me. We long for a caring Universe which will save us from our childish mistakes, and in the face of mountains of evidence to the contrary we will pin all our hopes on the slimmest of doubts. God has not been proven not to exist, therefore he must exist."

      -- Academician Prokhor Zakharov, "For I Have Tasted The Fruit", on the subject of Intellectual Integrity

      --
      Real Daleks don't climb stairs - they level the building.
    13. Re:Discussion? by sydb · · Score: 1

      Personally my answer to the opening question is "No". I think that example depends on the surveyee having no real opinion of their own in the first place, rather than a skillful surveyor who can somehow introduce cognitive dissonance where previously there was none. It's good for a laugh once, though.

      --
      Yours Sincerely, Michael.
    14. Re:Discussion? by Anonymous Coward · · Score: 0
      This is not a discussion. It is comedy.

      Look again! How much do you think it costs for government to look into this issue? How much bigger did government become for it? How many new laws had to be written? How many laws had to be corrected?

      There's your answer. It's not a discussion or a comedy. It's a reason to spend money, because spending money is what drives the expansion of government. They will be delighted to look into petty issues like this. What's next on the list?

    15. Re:Discussion? by LaCosaNostradamus · · Score: 1

      "[T]here's no actual ID classes being taught outside of private parochial schools despite various proposals"

      Er, you're wrong:

      ACLU of Ohio Demands Schools Stop Teaching Intelligent Design as Science
      2/14/2006

      Quote: "The American Civil Liberties Union of Ohio today sent a letter to the Toledo Public Schools demanding that they cease allowing staff to teach intelligent design in science classrooms throughout the district."

      Quote: "Recently, a news article in the Toledo Blade featured teachers in the Toledo Public School system who admitted teaching intelligent design in science classrooms. In the article, teachers acknowledged they taught lessons on various pieces of evidence that seemed to refute evolutionary theory, despite the fact that all were proven to be hoaxes by the scientific community."

      So, go ahead and make a few jokes about "Jesusland" for us here in Toledo, Ohio. The sad thing is that, such jokes better represent direct reality here than some farcical part of reality.

      ID is being taught in public schools in America. The religious wack-jobs are constantly pushing it, and even teachers (i.e. people with enough education to know better about science, the seperation of church and state, and political liability) are involved on their own.

      This is a sad state of affairs. It's not fringe; it's pervasive but insidious in various areas of the US.

      --
      [You have a stable society when some nut guns down a schoolyard and the law doesn't change.]
    16. Re:Discussion? by Anonymous Coward · · Score: 0

      I agree, too many Americans are incredibly stupid and easily manipulated. I drive home from work every day in wonder at how many of these people make a living. I can only guess that it is because the US economy generates trillions, some of it has fall through.

      Theories on why this is so prevalent?
      1) It's a political tool, like "war on terror", trickle-down economics, or tax cuts or "lock box" that trys to mobilize the masses, and it's currently being taken to it's illogical extreme. Pushing ID is like raising the terror threat to "Orange". It's pure manipulation.

      2) Many marketing types really benefit from it. Wrapping this crap up and selling it is easier than doing something new, because the people who believe in intelligent design are idiots and therefore separated from their $$ quickly. Why not push an I.D. story and pump up your ratings? It's an old game.

      3) The invention of religion is coming full circle. In the US it's so easy to make a living and we are so bored that we now have to sit around and invent Zeus and Venus and the other gods all over again. Gives us a higher purpose.

      You are right it is comedy. Dark comedy. Intelligent design is an embarassment to anyone with an IQ over 50. It's too bad these morons have a say in our government, their rights should be revoked for being brainwashed by those who would use religion to manipulate the masses.

    17. Re:Discussion? by glwtta · · Score: 1
      Which of the following statements comes closest to your views on the origin and development of human beings -- [ROTATE 1-3/3-1]:
      1) Human beings have developed over millions of years from less advanced forms of life, but God guided this process,
      2) Human beings have developed over millions of years from less advanced forms of life, but God had no part in this process,
      3) God created human beings pretty much in their present form at one time within the last 10,000 years or so?

      Looks fairly non-leading to me.

      --
      sic transit gloria mundi
    18. Re:Discussion? by entropiccanuck · · Score: 1

      "Just under half of Britons accept the theory of evolution as the best description for the development of life, according to an opinion poll."

      The above quote is from the http://news.bbc.co.uk/1/hi/sci/tech/4648598.stm

      The slashdot discussion on this story:
      http://science.slashdot.org/article.pl?sid=06/01/2 6/1346255

      Perhaps the difference in perceived belief between Europe and the US, or other countries, is more a function of who owns the media companies than reality? That's strictly conjecture, but clearly it's not as delineated as your post indicates.

    19. Re:Discussion? by Harry+Coin · · Score: 1

      Looks fairly non-leading to me.

      It's fairly neutral, but notice that all three questions assume the existence of god. It only says that "God had not part." How about one that says "There is no God."

      --
      That's pre 7-11 thinking....
    20. Re:Discussion? by rburgess3 · · Score: 1

      Awesome SMAC reference!

      Best. Game. Evar.

      Alpha Centauri already is what Civ IV could have been. Too bad the game was released during a decline in the popularity of 4x games.

  25. Faulkneresque commentary on technology by QuatermassX · · Score: 1
    This is far OT, but as I'm responding to a post far OT, I hope you'll indulge me. My favourite line in any of his novels is AS I LAY DYING's one-line chapter: "My mother is a fish."

    Funny, tragic, brilliant and memorable. Well, we laughed about it a great deal in High School Lit class!

  26. Re:beleive what you want... by Slime-dogg · · Score: 1

    There is evidence of evolution everywhere. We cannot deny such a thing. There is a reason why the red squirrel population in Europe is declining, one named "Natural Selection." There is another type of squirrel that breeds faster, is sturdier and more adaptable, and remembers where it stores its stuff better. The growth of the gray squirrel population squeezes out the population of the red. It is natural selection at its finest.

    Now, no one can prove or disprove that there could be an intelligence that has guided evolution along. That is a discussion best left for philosophy, though, as it has left the realm of science itself. The only thing that science has to work with, right now, is what is readily at hand. Such is the difference between Plato/Socrates and Aristotle. One is the search for significance and meaning behind the numbers, the other is the significance and meaning in the numbers. Neither is wrong, but then again, it is far easier to follow the latter.

    --
    You need to restart your computer. Hold down the Power button for several seconds or press the Restart button.
  27. Still seems Chicken & Egg to me... by the_skywise · · Score: 1

    The viruses need the single celled organisms to replicate... but the single celled organisms couldn't realy evolve into proper single celled organisms until the viruses came along to do it...

    1. Re:Still seems Chicken & Egg to me... by Miraba · · Score: 2, Insightful
      The viruses need the single celled organisms to replicate... but the single celled organisms couldn't realy evolve into proper single celled organisms until the viruses came along to do it...
      Did you RTFA? The scientists suggest that a virus similar to Mimi is descended from a cell, or that ancient cells looked somewhat like Mimi. They're not saying that Mimi is the Mother Cell, or that cells only existed once virii were around. They're saying that something like Mimi may have been one of the earliest cells/virii/what-have-you, and that virii (like Mimi) may have accelerated the evolution of unicellular lifeforms by inserting themselves into those cells.

      Those Mimi-precursors would not have needed cells to replicate, as they might have been what we consider proper cells and thus self-replicated.

    2. Re:Still seems Chicken & Egg to me... by NoData · · Score: 2, Insightful

      The viruses need the single celled organisms to replicat

      RTFA. Most

      RTFA. Most (known) modern viruses need host cells to replicate. What if the ancient ones did it just fine? But they they got bored of it and started exerting pressure on other proto-life to do their replication for them. What if all of the rest of early life evolved under selective pressure of viruses to be good hosts for them? What if were all the viruses' evolutionary bitches? Just that, you know, things got out of hand and one day the viruses look around and cats are eating gazelles and soccer moms are buying SUVs, and they're like "WTF? Where did it all go wrong?" And then they're like, "Wellp, time to clean house. Break out the H5N1. Will start with the birds."

      Kinda like that. But less anthropormorphically..... ....or MORE so?!

      dum dum DUM.

    3. Re:Still seems Chicken & Egg to me... by NoData · · Score: 1

      apologies. suffering from an anti-preview button virus. i'm its bitch.

    4. Re:Still seems Chicken & Egg to me... by Dunbal · · Score: 1

      Most (known) modern viruses need host cells to replicate. What if the ancient ones did it just fine?

            Then by definition these "ancient ones" wouldn't be viruses.

      --
      Seven puppies were harmed during the making of this post.
    5. Re:Still seems Chicken & Egg to me... by dancpsu · · Score: 1
      No, they are saying that Mimi devolved to lose the ability to reproduce on its own, but just not very much. Therefore, all viruses must have devolved from earlier reproducing cells. Therefore these hypothetical pre-virus cells must be simpler than bacteria. Therefore, they must have been before bacteria, since simpler life means earlier in time.

      Now may I count the assumptions:
      1. The Mimivirus has devolved from a cell instead of evolved closer to a cell
      2. All viruses were like the Mimivirus at one point
      3. There is a fairly straight progression of simpler to complex life in the earliest days of the earth, and there were not multiple, widely varying pre-cell life forms evolving and devolving from independent starting points

      While it is a nice idea, the Mimivirus does not give us much to go on, and I would rather lean on hard evidence than assumptions.
      --
      "Scientists don't change their minds, they just die." -- Max Planck
    6. Re:Still seems Chicken & Egg to me... by tehdaemon · · Score: 1
      Only your third point looks valid to me. The Mimivirus has genes in common to both viruses and other cells.

      "Claverie found genes for such things as the translation of proteins, DNA repair enzymes, and other types of protein. Those functions were thought to be the exclusive province of more complex cellular organisms."

      "certain signature Mimi genes, such as those that code for the production of the soccer-ball shape of its capsid (an outer protein coat common to all viruses), have been conserved in viruses that infect organisms from all three of the domains, particularly in eukaryotes."

      With this information your points one and two are based on hard evidence and few assumptions (like common decent etc, assumptions common to all evolutionary theories)

      --
      Laws are horrible moral guides, moral guides make even worse laws.
    7. Re:Still seems Chicken & Egg to me... by dancpsu · · Score: 1

      It's nice that there is a combination of cell enzymes and proteins in this virus, but is it because the Mimivirus devolved from an original cell, or evolved closer to a cell, due to some kind of copy error that grabbed some DNA from a host?

      I don't doubt that viruses have evolved, but they very well may have evolved separately from other life, and finding one that is a hybrid raises more questions than it answers.

      --
      "Scientists don't change their minds, they just die." -- Max Planck
    8. Re:Still seems Chicken & Egg to me... by sunwolf · · Score: 1
      Just that, you know, things got out of hand and one day the viruses look around and cats are eating gazelles and soccer moms are buying SUVs, and they're like "WTF? Where did it all go wrong?"

      Yeah, WTF? Women don't need cars to get around the kitchen.

      *ducks*
    9. Re:Still seems Chicken & Egg to me... by Miraba · · Score: 1
      It's nice that there is a combination of cell enzymes and proteins in this virus, but is it because the Mimivirus devolved from an original cell, or evolved closer to a cell, due to some kind of copy error that grabbed some DNA from a host?
      "Evolved closer to a cell" ignores the fact that there are many different ways of obtaining the same end result and implies that there's only one way to code for any of those proteins. Identical sequences arising from chance are virtually impossible.

      Obviously we're not sure what the history was, but that's the point of more research. It's unlikely (if not impossible) that the answer will ever be known 100%, but new research will start tipping it one way or another (whether it's a descendent or simply grabbed some DNA).

      BTW, it's a feature, not a bug. ;) In all seriousness, people have known for some time that there are some interesting ways to copy and insert DNA into other genomes, and some people have suggested that evolution has been driven by these swaps. They'd be idiots to not consider it as a possibility.

      I don't doubt that viruses have evolved, but they very well may have evolved separately from other life, and finding one that is a hybrid raises more questions than it answers.
      AFAIK, that has been the theory for some time. A hybrid suggests that virii and/or cells have spent eons copying DNA from each other (either by accident or on purpose) and doesn't add anything new to our bank of knowledge. That's why people are jumping on the new, more exciting idea.

      You're right to take this with a grain of salt. But if they're right, they hit on something really, really big.

    10. Re:Still seems Chicken & Egg to me... by tehdaemon · · Score: 1
      That possibility can be checked out. If some kind of copy error grabbed some host DNA, then we can compare that DNA to known cell families and we can then infer when this copy error occured. The article implied that if this happened, it occured around or even before eukaryotes, bacteria, and archaea split off from their common ancestor.

      "Mimi, it turns out, belongs to its own distinct and extremely ancient lineage of large DNA viruses."

      If viruses did not devolve from cells, then they started after them, as they depend on them to exist. It is unlikely that mimivirus decended from modern-looking viruses as it seems to be as old or older than them.

      --
      Laws are horrible moral guides, moral guides make even worse laws.
    11. Re:Still seems Chicken & Egg to me... by Anonymous Coward · · Score: 0

      Fine. Replace "virus" with "thing that's a lot like a virus but doesn't need a cell to reproduce" and get on with the actual issue instead of griping about semantics.

  28. Which came first? by goombah99 · · Score: 2, Interesting
    Which came first the symbiant or the host? One might say well the host of course. But now consider the virus and the bacteria. we are told the host may have evolved from the virus.



    of course bacteria have their own virus like properties. For example, they serialize their objectes and multi-cast them to other bacteria for remote processing. Sometimes data values from that compuation. That is to say, bacteria have plasmids which a small usually circular chunks of data that are docked along side their primary dna. these plasmids are processed by the local host bacteria to get it's data and instructions. But it can also give these plasmids to other bacteria and accept them. That's how for example, antibiotic resistance is commonly propagated. The instructions for it get put on a plasmid and distibuted to other bacteria for use. thus like viruses this enable the net DNA of the host to change after birth.

    In separate analogy. It's interesting to notice that like von neumann's architecture DNA intersperses data and instructions. And of course we also get buffer overflow error too where data becomes instructions. I've foundit intriguing that Von Neuman also felt this ambiguity was more powerful than separation of data and instructions. These days keeping the separate is of course a big problem in robust programming. Yet life, the ultimate robust system, does the same thing.

    --
    Some drink at the fountain of knowledge. Others just gargle.
    1. Re:Which came first? by Firehed · · Score: 1
      Also consider the fact that if most people were given the opportunity to see a "live" virus under the microscope, they'd say it's alive. They don't give a crap that viruses don't carry on the life processes - I'd consider a virus much more "alive" than a plant, even though plants most definately do carry on the life processes. Clearly our scientific definition of a living organism just sucks. Especially if we can't determine at what point a fetus becomes a baby (or whever technical terms need to be used), but we can say that these little micro-killers are, by definition, dead.

      Wait, does this mean that the Matrix is definately coming? I dunno if the tinfoil hats will cut it for that; I'm thinking a big ol' metal plate screwed onto the back of your skull and anywhere else those data holes would be located.

      --
      How are sites slashdotted when nobody reads TFAs?
    2. Re:Which came first? by toadlife · · Score: 1

      "In separate analogy. It's interesting to notice that like von neumann's architecture DNA intersperses data and instructions. And of course we also get buffer overflow error too where data becomes instructions. I've foundit intriguing that Von Neuman also felt this ambiguity was more powerful than separation of data and instructions. These days keeping the separate is of course a big problem in robust programming. Yet life, the ultimate robust system, does the same thing."

      It's not a bug. It's a feature!

      --
      I don't always use unix-like operating systems; but when I do, I prefer FreeBSD.
    3. Re:Which came first? by Ithika · · Score: 1

      > Clearly our scientific definition of a living organism just sucks.

      I think it's actually our intuitive definition of a living organism that sucks. The science is there to cut out the woolly and contradicting thinking that people use from day to day.

      A 'living' virus would look like nothing at all under a microscope, and you certainly couldn't fool anyone that it was alive if you didn't tell them what it was. Only a preconceived idea that a virus is alive would cause them to change their mind.

    4. Re:Which came first? by Bloke+down+the+pub · · Score: 1
      if most people were given the opportunity to see a "live" virus under the microscope, they'd say it's alive. They don't give a crap that viruses don't carry on the life processes
      They decided that things like respiration and protein sythesis weren't their core value-adding business, so they outsourced them.
      --
      It's true I tell you, feller at work's next door neighbour read it in the paper.
  29. viruses and cross species gene transfer by u19925 · · Score: 1

    Virues may be involved in transferring genes from one species to another. In fact in many eco systems, it is found that plants, animals share common genes. It is unlikely some plants originated from animal or otherway round or they both originated from common microorganism either. It is more likely that the viruses (or virii as it is called biology) when infected different species, they transferred genes from one species to another. So not only all forms of life evolved from viruses, but current genetic evolution may be related to viral gene transfer.

  30. Brings to mind a SF novel I read last year . . . by mmell · · Score: 1
    Virus Clans (sorry, forgot the author's name).

    The central tenet of the story is that virus' posess and are part of an emergent "hive mind", that all evolution on Earth has occurred at the unconscious direction of virus' attempting to modify the environment enough for the virus' to achieve sufficient numbers and complexity to consciously express their hive mind - all while we poor, benighted humans insist on viewing ourselves as the pinnacle of the evolutionary mountain. The author writing lead me to believe that he was strongly influenced by the works of Michael Crighton.

    With appropriate apologies to proponents of Intelligent design - namely, none.

  31. It's called Descolada by skhisma · · Score: 1

    well anyone who read the ender's game series .

    1. Re:It's called Descolada by Anonymous Coward · · Score: 0

      Working link, since you couldn't get it right:
      http://en.wikipedia.org/wiki/Descolada

    2. Re:It's called Descolada by Philotic · · Score: 1

      I think it is Card's turn for a copyright lawsuit.

  32. Precursion by Doc+Ruby · · Score: 2, Interesting

    Most viruses are RNA coated with proteins the RNA generates from its environment. The earliest self-replicating molecule type we can document is RNA, though prions might turn up now that we know a little bit about them. Prions aren't as durable as RNA, so finding ancient evidence of them might be harder. But once we do, might we not start saying prions are the precursors of all life?

    --

    --
    make install -not war

    1. Re:Precursion by scooviduvoctagon · · Score: 1

      "Most viruses are RNA coated with proteins."

      Sounds tasty!

      (glad I'm not a vegetarian)

    2. Re:Precursion by Doc+Ruby · · Score: 1

      Animals and vegetables are DNA coated with protein (and RNA). Many are tasty, though those acids can come back on you.

      --

      --
      make install -not war

  33. How much we don't know.... by katorga · · Score: 1

    This title of this article should be "We Don't Know Jack". After reading the article I was almost ready to become an Intelligent Design proponent.

  34. Re:beleive what you want... by Anonymous Coward · · Score: 0

    so this natural selection, does it cause these squrrels DNA to improve? or does it add anything to it that actually improves it in anyway? how does the weak dying make the stronger any better than they were before?

  35. similar to eukaryotic versus prokaryotic by circletimessquare · · Score: 3, Interesting

    viruses certainly play a roll in evolution: they are mercenary gene transfer mechanisms, even across species

    as to the roll they played in the very beginning, it's my personal belief they were there from the start, swapping dna between proto-bacteria. i think self-replicating dna came first, then one day a miraculous/ fortuitous event happened: one of the self-replicating dna got swallowed by a little oil droplet, a bag, a micelle, and in this contained environment, was allowed to direct it's self-replication in a more controlled manner. this protobacteria's dna most definitely still had a life outside the oil droplets where it could still self-replicate. so therefore the first "virus" was still self-supporting. but then, parasitically, it devolved and co-evolved with the proto-bacteria to get a free ride: get its energy source for its replication from its new more stable proto-bacteria

    this oil micelle adapation was only one miraculous/ fortuitous moment. the prokaryotes, bacteria, are very simple: loose dna floating around inside a capsule. the eukaryotes are highly regimented: they have organelles throughout the cell, one of which, the mitochondria, has its own genome

    how did that happen?

    it can only mean, one fortuitous day, billions of years ago, one cell swallowed another and instead of being digested, the swallowed cell made "food" (atp, other energetic molecules) for the master cell

    and the rest is history. our genetic history. without that one fortuitous moment, whenever and wherever it happened so long ago, life as we know it would not be the same in the most radical of ways. perhaps the earth would still be just bacterial and algal mats. perhaps life would still evolve more complex, but in ways utterly alien to how they are now

    so there is, in a way, many such "miraculous", if you believe in intelligent design, or "fortuitous", if you believe in undirected evolution, throughout our history as life

    and in the end, it doesn't matter which way you view it: god-directed or random, as long as you agree it HAPPENED

    the real problem with the intelligent design crowd is when they deny basic facts

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
    1. Re:similar to eukaryotic versus prokaryotic by Dunbal · · Score: 1

      it devolved

            Where has this ground-breaking theory of Devolution been published, and how does it work?

      --
      Seven puppies were harmed during the making of this post.
    2. Re:similar to eukaryotic versus prokaryotic by sunwolf · · Score: 1

      Instead of proto-bacteria, it might be more accurate to use "protobiont," because the characteristics that make bacteria bacteria weren't necessarily around at the beginning of life. Also, self-replicating DNA is kind of a big first step - more modern theories point to ribozymes as the original self-replicating molecule, being a ribosome molecule that can act as an enzyme and therefore have information-storing and metabolic functions. The oil droplets, or micelles, that you mention are probably better known as liposomes (that's actually a really good article on selectively permeable membranes and the first cells) and the presence of what are essentially protists (mitochondria and chloroplasts) inside eukaryotic cells is called endosymbiosis, and occurred (at least with mitochondria) by endocytosis. More on that here.

      And here's a bugmenot search for Discover.com: http://www.bugmenot.com/view.php?url=www.discover. com

    3. Re:similar to eukaryotic versus prokaryotic by Anonymous Coward · · Score: 0

      i believe in god and i too believe it happened.

    4. Re:similar to eukaryotic versus prokaryotic by smellsofbikes · · Score: 1

      I'm not quibbling with your general outline, but probably the genetic precursor to DNA was RNA. Tom Cech got his Nobel for showing that RNA can act as an enzyme as well as its more standard job of transporting genetic information. If it can be coaxed to perform both protein and DNA functions, it's likely that in some previous iteration it DID perform both, and only later did life settle on dividing the functions up, leaving only dim echoes of RNA's old abilities. Since there are RNA viruses, this might indicate that they're very old, dating from the pre-DNA times, or it might indicate that they're escaped RNA sequences from cells. In the latter case, they could be thought of as basically a second, derivative, abogenetic event -- a pile of chemicals that gains the ability to self-replicate, parasitically. (All life is parasitic. Viruses are parasitic on life. It's just a matter of degree.) You can draw a continuum, from multicellular life, through large complex bacteria, through obligate parasitic bacteria like the chlamydia group that have a metabolism but can't actually survive on their own (probably), through viruses that have no metabolism and require cellular machinery, to stuff that's just protein -- prions -- but still manages to self-amplify. The line of "this is alive and that is not" is really fuzzy.

      --
      Nostalgia's not what it used to be.
    5. Re:similar to eukaryotic versus prokaryotic by Deiouss · · Score: 0

      "it can only mean, one fortuitous day, billions of years ago, one cell swallowed another and instead of being digested, the swallowed cell made "food" (atp, other energetic molecules) for the master cell"
      An interesting speculation, and I am sure it was possible, but it would not have played a role in evolution. The ingested cell would not have affected the genome of the host cell and when the host cell split, the newly formed cells would not contain the "parasite" cell.

    6. Re:similar to eukaryotic versus prokaryotic by Anonymous Coward · · Score: 0
      when the host cell split, the newly formed cells would not contain the "parasite" cell.

      They would if the "parasitic" cell had itself grown and divided. And that's likely exactly what did happen.

    7. Re:similar to eukaryotic versus prokaryotic by rrohbeck · · Score: 1
      one of the self-replicating dna got swallowed by a little oil droplet

      Basic fallacy here: Phenotype vs. genotype.

      How would this event have created the DNA/RNA code for its offspring to re-build or regenerate that oil droplet?

      No, the ability to build a cell wall must have evolved just like everything else. Only if you have two replicating entities (mitochondria, chloroplasts...) fusion or symbiosis becomes a possibility. Or if genetic code itself is transferred (plasmids, viruses.)

    8. Re:similar to eukaryotic versus prokaryotic by wrecked · · Score: 1

      Somebody mod parent up. Tom Cech won the Nobel Prize for that work on self-replicating strands of RNA.

    9. Re:similar to eukaryotic versus prokaryotic by Anonymous Coward · · Score: 0

      I'm at a public terminal and I don't want to log in

      But I have to ask: what is up with your aversion to periods at the end of paragraphs? In any particular paragraph you have lots of well formed sentences. Many end in periods. But the last one never has one

      I have noticed that this is a theme with your posts. Maybe you think of it as a way of expressing your individuality? Or you want to annoy grammar and punctuation nazis in a not-so-subtle, passive aggressive way? Or perhaps your first language has wildly exotic and different punctuation rules to our own?

      I ask this, circletimessquare, because most of the time your posts are reasonably lucid and well thought out, and I enjoy reading them

      Except that your wacky use of punctuation makes every thought you have seem unfinished

      And it makes your posts hard to read, and I find myself, having read them, being unable to remember much about your point. Mostly all I remember is your aversion to periods

      It's a shame really

    10. Re:similar to eukaryotic versus prokaryotic by glitch23 · · Score: 0

      the real problem with the intelligent design crowd is when they deny basic facts

      The real problem with the evolution crowd is when they don't provide any basic facts but have to speculate on everything with no definitive answers for anything. This article just proves that point because now they think that viruses may have been the start of life. How many more ideas are they going to go through? It doesn't ever get them any closer to making the theory any more sound. If evolution is real I have to wonder why one branch of the tree became so different compared to the other branches (humans to any other species). There should be a lot more similar variations of humans but there is only 1 type of human at that. There is a big divide between humans and any other species. The fact that the DNA structures are similar isn't enough to counter my statement because we are all on the same planet and live by the same general physical rules so the fact that DNA is similar isn't surprising nor does it imply anything. Human intelligence for example is far beyond any other species on earth.

      --
      this nation, under God, shall have a new birth of freedom. -- Lincoln, Gettysburg Address
    11. Re:similar to eukaryotic versus prokaryotic by Anonymous Coward · · Score: 0

      There should be a lot more similar variations of humans but there is only 1 type of human at that. There is a big divide between humans and any other species.

      Haha, that's funny. Perhaps you live in a small in-bread town, but out here in the real world there ARE lot's of similar variations of humans! We call them races. Further more, on a larger scale we break them down by historical periods which show rather large variations over time.

      Your other complaints are ludicrous. You claim that saying "God did it!" is a better answer then gathering information and slowly building a complete picture. That's, well, moronic. I also find it amazing that you'd DARE to claim that the evolution crowd "don't provide any basic facts" when your ONLY fact you have to present is "God! GodGodGodGodGodGodGodLAlalallalalala I can't HEAR you!" Faith is a wonderful thing, unless it's blind faith.

    12. Re:similar to eukaryotic versus prokaryotic by Bryan+K.+Feir · · Score: 1

      I remember seeing a description once, that listed the rough percentage differences in genetic makeup between various groups. I seem to recall that the maximum difference between any two humans was about 0.2% of our genetic structure. (For comparison, humans and chimps differ in about 2% of our genetic structure.)

      (As another note, these sorts of numbers are more than a little controversial, as there is great debate over whether to count all base pairs, only base pairs that would change the resulting amino acid, or only ‘active’ genes.)

      The thing that got me from the original article was that to get the maximum difference between two humans, you had to take two people from two different relatively isolated and inbred tribes in Africa. Effectively, you get several ‘pools’ of genetic information when they're separated from each other, and the pools will tend to drift in different directions. Sure, all of those groups could still interbreed, but from a genetic point of view there were some pretty significant differences...

  36. Well by beakerMeep · · Score: 1, Insightful
    "In the discussions of intelligent design, one hears a yearning for an old-fashioned creation story, in which some singular, inchoate entity stepped in to give rise to complex life-forms--humans in particular. "

    In The discussion of evolutionary biology, one hears a yearning for people to leave out the ideas behind itellegent design so that the scientists can get back to doing their work.

    Seriously, what's wrong with this poster and slashdot editor for letting this through? Why did that need to be included for this to be talked about? Nice of the poster to inject a controvertial personal view in the end of his submission for all of us to flame about.

    --
    meep
    1. Re:Well by steveha · · Score: 3, Informative
      Nice of the poster to inject a controvertial personal view in the end of his submission for all of us to flame about.

      Hi, I'm steveha. The poster.

      For the record, here is the story submission exactly as I submitted it:

      The cover story for this month's Discover magazine tells of a recently discovered gigantic virus, Mimivirus, that has blurred the lines between viruses and bacteria, and spurred speculation that viruses could be the reason life evolved past single-celled organisms.


      Please note that I didn't put any personal views there.

      Please also note that Zonk did not put words in my mouth. He put my summary in double-quotes, and then after the double-quotes he put some additional stuff from the article. He edited my link references but did not edit my words at all.

      steveha
      --
      lf(1): it's like ls(1) but sorts filenames by extension, tersely
    2. Re:Well by beakerMeep · · Score: 1

      my appologies steveha, i wrongly attributed the sensationalism to you and zonk. and, eventhough i expect as much from zonk (he is probably my least favorite editor), it was a bad assumtion nonetheless. clearly the author of this article used the idea of ID to spice up their writing. the fact the he did that detracts from the ideas being talked about. *that* was what i was reacting to. sorry for misdirecting it towards you.

      --
      meep
  37. So it wasn't an Intelligent Designer... by geobeck · · Score: 1

    ...that created life as we know it; it was an Intelligent Hacker!

    --
    Find environmentally and socially responsible products on http://buy-right.net
  38. Until it's final, keep your opinions to yourself? by Anonymous Coward · · Score: 0

    Yeah, nothing like fighting for our freedoms, huh?

    Tell me, when the Rapture comes will it hurt your head if you're inside?

  39. They didn't mention ID... by Kozar_The_Malignant · · Score: 2, Insightful

    >Is it possible for scientists to publish their findings WITHOUT stooping to the level of mockery?

    Scientists don't publish their work in Discover. It is a news magazine with a science focus and a somewhat sensationalist editorial style. Don't confuse the hyperbole of journalists with the scientists writings. The scientists working on these things tend to publish in obscure journals like Virus Research. For more information on these things including some cool photos (these things are larger than some cells) see GiantVirus.org.

    --
    Some mornings it's hardly worth chewing through the restraints to get out of bed.
  40. Viri as the "prime mover" by paladinwannabe2 · · Score: 1

    I find this article extremely interesting- it implies (amoung other things) that by altering DNA in its hosts, viruses could be one of the main mutation contributors. Genetic engineers do this now by using retroviruses to insert genes we want, so it's not a stretch to say that this happened incidentally in the past.

    --
    You are reading a copy of my copyrighted post.
  41. Speculation by Locarius · · Score: 1

    The only link I see between 'Virus -> Humans' and 'ID' is that both are conclusions brought about by speculation.

    1. Re:Speculation by shaitand · · Score: 1

      Non-sense. Viruses as a precusor to life is a theory. There is evidence to support this theory, further there are predictions that can be derived from this theory and it can be disproven. ID is not a theory, it is pure conjecture. There are no predictions that can be derived from ID. ID can never be disproven, whatever evidence turns up, regardless of nature can be explained as having been caused by the intelligent designer.

      If it is not possible to predict conditions based upon the model your "speculation" resulted in, and/or no advance in science or technology could ever allow one to test your conclusions then they are not science.

  42. X-Files by Anonymous Coward · · Score: 0

    Who knew X-Files was right all those years ago....

  43. The solution to the chicken & egg problem... by ArsenneLupin · · Score: 1
    Of course there is a third participant: THE BIRD-FLU VIRUS!

    The viruses need the single celled organisms to replicate... but the single celled organisms couldn't realy evolve into proper single celled organisms until the viruses came along to do it...

    AFAIK, the point is that the virii forced the single-celled organism to evolve beyond single-cell, i.e. to transform into multi-cell organisms.

    It's a little bit like windows, the virii and Linux. First came Windows (single-user^H^H^H^Hcell). Then came the virii. And with the virii came the awareness that security was important after all, which gave rise to Linux (multi-cell).

  44. Re:beleive what you want... by Spy+der+Mann · · Score: 1

    "the chance that higher life forms might have emerged by chance is comparible with the chance that a tornado sweeping through a junk yard might assemble a Boeing 747 from the materials therein."

    There's a flaw with this thinking.

    Boeing 747s do not self-replicate, nor mutate. Living cells do.

  45. Re:beleive what you want... by Qzukk · · Score: 1

    how does the weak dying make the stronger any better than they were before?

    That depends. Were they weak because of a mutation that made them grow one leg backwards? Was another squirrel stronger because of a mutation that allowed it to stand on two legs?

    --
    If I have been able to see further than others, it is because I bought a pair of binoculars.
  46. MOD PARENT UP by LeonGeeste · · Score: 0

    The condescension of some biologists drives me nuts. I remember a magazine that published arguments from IDers (all relatively respected, with PhD's) followed by response from more wizened biologists. Now, if I were responding to a fellow scientist, I would treat them respectfully as I dismantled their arguments. But what did the magazine call this collection? Something like "Evolution: Science versus faith." Okay, if the people were openly religious and phrasing their arguments that way, I can see that title as being fair. But people with PhD's presenting what they deem scientific arguments? The whole title is skewed against them. It would be like a magazine publishing economists responses to arguments against tax cuts with the title of the "debate" as "Tax Cuts: Economics and Emotion".

    --
    Rank my idea: http://www.sinceslicedbread.com/node/531
    1. Re:MOD PARENT UP by Anonymous Coward · · Score: 0

      The condescension of some biologists drives me nuts.

      I agree. Some people are very childish. Oh sure, the IDers can be childish too, but I don't care about them. It makes me cringe when the people *on my side of the argument* stoop to name calling. I hate it when biologists do it. I hate it when people defending Apollo do it. I hate it when Linux users do it. I just hate it!

    2. Re:MOD PARENT UP by Darby · · Score: 1

      I hate it when people defending Apollo do it.

      Rocky shot first!!! ;-)

  47. this is news? by Xtravar · · Score: 1

    From TFA: "A monstrous discovery suggests that viruses, long regarded as lowly evolutionary latecomers, may have been the precursors of all life on Earth"

    Wait... who actually thought viruses came later? Isn't it pretty obvious they came first? They've got DNA... but they aren't "alive". Isn't it a no-brainer that they came before cells?

    --
    Buckle your ROFL belt, we're in for some LOLs.
    1. Re:this is news? by TekGoNos · · Score: 1
      They've got DNA... but they aren't "alive". Isn't it a no-brainer that they came before cells?
      No.

      Current viruses cannot replicate without an nuturing environnement, i.e. outside a cell. Therefor, the theory was that cells were there before viruses and that viruses evolved from RNA/DNA fragments.

      The article mentionned the idea that viruses might have evolved from something a little bit more complex but distinct, that was able to replicate outside a cell and became simpler after cells emerged.
      Another idea the article presents is that viruses might have high-jacked bacteria (cells without a nucleid) and stayed inside, becomming the nucleid, thereby creating eukaryotes (cells with a nucleid), the base of all complexe life.
      --
      I have discovered a truly remarkable proof for my post which this sig is too small to contain.
    2. Re:this is news? by Xtravar · · Score: 1

      Isn't it just common sense that non-living packages of DNA/RNA came before cells? Oh sure, they may not have infected anything, but they replicated. Then, some adapted to be more complex and some adapted to infect the complex ones.

      --
      Buckle your ROFL belt, we're in for some LOLs.
    3. Re:this is news? by Expert+Determination · · Score: 1

      What came first? The computer virus, or the computer. Early computers were not computer viruses. Viruses exploit features pre-existent in computers to reproduce. For example a virus is unlikely to contain a TCP/IP stack but might exploit one on its host to spread. Similarly, nobody expects early organisms to look like viruses (except now, maybe they do).

      --
      "The White House is not an intelligence-gathering agency," -- Scott McClellan, Whitehouse spokesman.
    4. Re:this is news? by BananaPeel · · Score: 1

      You are dead right and raise an interesting point. A non living thing which encapsulates DNA(or RNA) is the obvious precuror to life. It doesn't matter if it doesn't have a host as long as it can self assemble at some level The thing that I constantly come back to thinking is that this precursor must still around today, its probably pretty ephemeral and easily missed, but there should still be a lot of it around. It may be limited to areas where conditions are simlilar to early earth conditions. But it must still be there. Afterall the huge amount biological material floating around the planet would constantly bring some of the precursors together.

    5. Re:this is news? by Xtravar · · Score: 1

      I think computer viruses and computers aren't quite a good analogy. But computer viruses and early computer programs probably were. Say you have a binary that dynamically compiles code in memory and executes it. That's not far from having a binary that modifies other applications' memory to do what it wants.

      But nevermind computers.

      Sure you can argue semantics, but really: what if a virus were capable of reproducing, not by infecting cells, but by destroying or utilizing other 'non-living' things? To us, it would most closely resemble a modern virus: an arrangement of molecules capable of reproducing itself.

      So yes, early organisms would look like simplistic viruses.

      --
      Buckle your ROFL belt, we're in for some LOLs.
    6. Re:this is news? by Nuclear+Elephant · · Score: 1

      What came first? The computer virus, or the computer. Early computers were not computer viruses.

      To support this statement further, if you look at every byte (including deleted bytes) on a computer, you'll also find plenty of traces of past viruses, at least if you're running windows. It doesn't mean the virus created the computer, just that the computer has had many viruses.

  48. Re:beleive what you want... by Cheapy · · Score: 1

    Even if there is an incredibly small chance of it all working out, you must remember:

    It has to happen to someone.

    --
    Would you kindly mod me +1 insightful?
  49. Re:beleive what you want... by Anonymous Coward · · Score: 0

    but mutations are destructive to the dna code not constructive they do not add any information. and I doubt that the entire group of squirrells were mutants. and, well, squirrells do stand one two legs.

  50. If virii helped us to evolve... by thewiz · · Score: 1

    is that why you just can't get rid of people who annoy you?

    --
    If "disco" means "I learn" in Latin, does "discothèque" mean "I learn technology"?
  51. Shroud? by Anonymous Coward · · Score: 0

    a moment when the basic facts of origins and evolution seem to have fallen under a shroud.

    More like been obscured by the cloud of smoke being blown by american fundamentalists. Evolution theory is stronger than ever with important new fossil record discoveries shedding light on natural history.

  52. Evolutionary proof doesn't matter... by highspl · · Score: 1

    Someone who believes in ID will ignore this study as part of Darwinism, just as someone who accepts Darwin's theory ignores the ID belief.

    --
    It puts the lotion on it's skin, or else it gets the hose again.
  53. Re:beleive what you want... by Anonymous Coward · · Score: 0

    No. Some mutations are beneficial. Most are neutral.

  54. RTFA by StonedYoda47 · · Score: 1

    Basically I read two different ways around that: 1) Viruses are uber-creative in coming up with ways to replicate 2) Viruses basically "de-evolved" from more complex structures, and shed their abilities to self replicate.

  55. Desperate for Darwin by packetmill · · Score: 1

    Viruses May be the Precursors of All Life

    Yep, either them or Elton John.
    Or something other than God, right? Scientific theory is good when it doesn't invovle a "Mimivirus" (are you guys serious) or researchers who jerk off to pictures of Darwin before they go to sleep every day. But when you stoop this low, prepare to be called names and screamed at on your way to work.

    P.S Spyware spawns a lot more life on your desktop than a virus does, believe me.

    1. Re:Desperate for Darwin by Anonymous Coward · · Score: 0

      You're right, it's so much more uplifting to believe humans came from dirt.

    2. Re:Desperate for Darwin by deglr6328 · · Score: 1

      please note: you are an idiot. that is all.

      --
      - "Hear that?! The percolations are imminent! Cease your ingress!"
    3. Re:Desperate for Darwin by packetmill · · Score: 1

      But it's better than being the great grandson of a Mimivirus, no?

      Ahem..

      Lets not choose our beliefs according to which one of them makes you look better, ok. Good.

  56. primordial soup... virii... by Spy+der+Mann · · Score: 2, Insightful

    It makes sense. A self-replicating nucleic acid form must have access to proteins and aminoacids to multiply... in the beginnings of life, these materials were readily available on the surface of the oceans (primordial soup)... when the first self-replicating acids evolved into unicellular beings (having the ability to CREATE a membrane), others evolved along with them (having the ability to PASS through said membrane).

    Survival of the fittest. Those "protovirii" (term is an invention of mine) which couldn't adapt to the new environment of isolated (membraned) aminoacids, simply disappeared, or, to be more precise, were consumed by the other protovirii. It seems logical that the nucleic sequences with more "useful features" later merged with other useful sequences, obtaining things like the mimivirus discovered recently.

    So it's not "random aminoacids -> hocus pocus -> living cells", but rather "random random aminoacids -> protovirii -> living cells + cell-invading-virii".

    And THAT explains a mystery which i have thought about for so long... the existence of parasites and symbiotes. If an organism evolved, how could another organism evolve to take advantage of the first? The answer is that they evolved from the beginning, it's always been like that. Virii as the beginning of life solves this riddle with elegance.

    1. Re:primordial soup... virii... by bunbuntheminilop · · Score: 0

      Any evidence for the 'spontaneous generation' of life would be a scientific achievement rivalling Darwin's achievements.

    2. Re:primordial soup... virii... by Spy+der+Mann · · Score: 1

      Any evidence for the 'spontaneous generation' of life would be a scientific achievement rivalling Darwin's achievements.

      As long as it's science, I wouldn't mind.

  57. Like Keanu Reeves by nightsweat · · Score: 1

    Messiah? Yeah, you know - like Keanu Reeves.

    --

    the major advances in civilization are processes which all but wreck the societies in which they occur - A.N. White
  58. Re:beleive what you want... by i8puppies · · Score: 0

    "the chance that higher life forms might have emerged by chance is comparible with the chance that a tornado sweeping through a junk yard might assemble a Boeing 747 from the materials therein."

    in a junkyard the size of the universe, with a tornado the size of billions of galaxies, and it blew the materials around in such a way that they could only create structure and build off of their own structure, over the course of billions of years, i really think it would be impossible if many "Boeing 747s" weren't formed together.

    No evidence of evolution? HEY POT! IT'S ME: KETTLE!

  59. Re:beleive what you want... by ReverendLoki · · Score: 1
    Consider that intelligence, strength, and agility have all been shown to have an hereditary aspect. Now, consider the case of Squirrel A and Squirrel B. Squirrel A has genetic pre-disposition to being smart, strong and agile, while you... er, I mean, Squirrel B, do not possess any of these qualities.

    Squirrel A remembers where his nuts are at all times, and excels at providing nourishment for himself, his mate and his offspring. He get's all the chicks and has many, many offspring, all of which also carry his superior traits and are equally skilled at procreation.

    Squirrel B, however, even if he were to be able to blindly find his way out of his mother's basement, doesn't present a very desirable mating choice. If he were to mate, he'd be lucky to have the nuts needed to keep a family fed, and any offspring that managed to survive the winter without starving to death will be weak and sickly, and they to would be poor performers when it comes to procreation. Through this, the overall squirrel population becomes more likely to survive in the ecosystem.

    And that, poor Squir.. er, AC, is how Natural Selection makes the squirrel population stronger. The existence of this behaviour on Earth does not in any way exclude the existence of a supreme being as a creator.

    --
    09 F9 11 02 9D 74 E3 5B D8 41 56 C5 63 56 88 C0
  60. Even from the Vatican. by C10H14N2 · · Score: 1

    http://www.ncseweb.org/resources/news/2006/US/733_ intelligent_design_belittles_2_1_2006.asp

    "One gets the impression from certain religious believers that they fondly hope for the durability of certain gaps in our scientific knowledge of evolution, so that they can fill them with God. This is the exact opposite of what human intelligence is all about."

    --Father George V. Coyne S.J., director of the Vatican Observatory

    1. Re:Even from the Vatican. by Anonymous Coward · · Score: 0

      What a novelty. A hypocritical Catholic.

  61. Re:The solution to the chicken & egg problem.. by dcapel · · Score: 2, Informative

    Except for the fact that Unix long predated Windows, it just constantly screws itself over in various ways.

    --
    DYWYPI?
  62. Chicken and the egg... by Chris+Bradshaw · · Score: 1

    Again we are faced with the age old "What came first, the chicken or the egg..." debate. Let us please not forget about the Flying Spaghetti Monster FSM for it was by his noodly appendage that all things were and are created...

    --
    Get your Windows Malicious Software Removal Tool Here for FREE! - http://fedora.redhat.com
  63. Windows? by Anonymous Coward · · Score: 0

    Does that mean that Windows is the primordial ooze?

  64. Re:beleive what you want... by drgonzo59 · · Score: 1
    I am partial towards the red squirrels. I grew up in Russia and through all my childhood, in all the cartoons and childrens' books, the squirrel was a red squirrel. So for me that is how a scquirrel is supposed to look. After I came to US, I only saw the gray squirrels, and they just looked "wrong" to me.

    But, on a serious note, would it still be evolution if humans would interfere and introduce new species? Would that still be "nature doing its thing" because we are a part of nature or would that be some sort of a "bad" thing.

    I have always wondered about the "protected species". It seems that if evolution is what has been happening we should not have to worry about protecting species. We are the evolved species and we should be able to do whatever we want. Eventually we will nuke ourselves during some WWIII and then perhaps the squirrels or the monkeys can take over. Or should we regard ourselves above evolution...?

    Anyway, I guess I am not replying to your post specifically anymore, just thinking (writing) out loud...

  65. Life _is_ a virus... by scooviduvoctagon · · Score: 1

    And a virus is a meme.

    Therefore life is a meme.

    Would a meme, by any other name, not be as pointless?

  66. mutations from line noise? by know1 · · Score: 1

    mayb mutations from line noise or it's modern equivalent (i'm sure we've all seen borked files from sftp or whatever since then) will one day accidently change the code of a virus just enough to stick in the part of the code that is self aware. programs get bigger every day, with even the smallest of virii being bigger than the average program of twenty years ago by far. maybe when there is a sizeable enough chunk of code and some accidental buffer overflow occurs it finally will become aware. however due to the amount of time, with the million monkeys million typewriters thing, maybe this would eb as slow as the amount of time it takes real evolution. who knows, i'm just blueskying here. any thoughts?

  67. Re:beleive what you want... by Anonymous Coward · · Score: 0

    Stop reading Jehovah Witnesses books!

  68. I can see it now..... by isotope23 · · Score: 1

    ALL HAIL THE CURCH OF THE MIRACULOUS HERPES(tm)!

    Coming to a street corner near you...

    Great God Herpes, thank you for stepping in and creating multicellular
    life!

    --
    Service guarantees Citizenship! Questions Guarantee GITMO.... Amerika Uber Alles!
  69. Here we go again... by CodeShark · · Score: 1
    --as me pulls on the flameproof pajamas--

    While I find the idea that life originated from some primordial soup mix to be distasteful at best and downright inconceivable at worst, using scientific conjecture to attack the idea that a sufficiently super-advanced, presumably immortal "super being" that we conceptually use language to call "God" could not:

    • bring together the proper elements for life to survive, AKA a planet which is created (made) for that purpose,
    • populate the planet with biological organisms in a planned manner designed to insure balanced a eco-system forms,
    • then place another unique organism (humans) within that eco-system,

      while perhaps not scientifically provable at this time, is also not scientifically discreditable.

    So the whole science vs. religion arguments are a great big waste of time, flame wars, and effort, when the things that really matter are that we learn enough about our local world and do what it takes to make it the best possible habitat for all of the creatures that live in this corner of the universe.

    --
    ...Open Source isn't the only answer -- but it's almost always a better value than the alternatives...
  70. This isn't supprising... by Anonymous Coward · · Score: 0

    ...Humans as well as other advanced lifeforms seem to act just like viruses. We consume & reproduce - that's about it.

  71. Also possible... by Zantetsuken · · Score: 1

    though I haven't read the article, it sounds like its saying that the viruses (whats the plural for that?) themselves evolved, but I wonder (again, I haven't read it - yet) if mentions the possibility that the existence of viruses forcing the single cell organisms into having to evolve to be able to survive...

  72. Re:How many evolutionists does it take... by Dunbal · · Score: 1

    How may evolutionists does it take to change a lightbulb?

    None.
    Given enough time it will screw in itself!


          This shows a basic lack of understanding of evolution. The correct answer would be:

          None. Given enough time, fire-flies will evolve.

    --
    Seven puppies were harmed during the making of this post.
  73. Everybody knows the egg came first by i8puppies · · Score: 0

    Dinosaurs were laying eggs way before chickens were. Oops I forgot-- Dinosaurs didn't really exist, God put them in the ground so we get confused when we try to question him.

    1. Re:Everybody knows the egg came first by mfrank · · Score: 1

      No, *Satan* put them in the ground to make us believe in evolution and reject Christ. Please pay attention.

    2. Re:Everybody knows the egg came first by i8puppies · · Score: 0

      As a Pastafarian I refuse to believe in Satan. The bones were obvioulsy placed there by the one and only God, Flying Spaghetti Monster. And lo' there was the soil, and in which were not dinosaur bones but empty beer cans and a midget, which proved His existence, and He took his noodly appendage and turned them into dinosaur bones to confuse us. Raaaaaaamen.

      Please convert to Pastafarianism, since there is obviously only one correct religion and this is it.

  74. News? by Transcendent · · Score: 1

    My biology teacher in High School taught us this. How is this news?

    1. Re:News? by CrankyOldBastard · · Score: 1

      Because when your teacher taught you that, he was wrong. Now of course we can see he was visionary. Soon he'll be just a forerunner.

  75. here by circletimessquare · · Score: 1

    http://www.google.com/search?q=evolution+of+parasi tes

    evolution is replete with thousands of stories of free-living organisms who co-evolve with other organisms and then devolve (lose some of their functions such that they become entirely dependent on a host)

    a virus is such a parasite

    i said it was my personal belief, but: virus's are just batches of dna/ rna that need a host to replicate

    at one time, that's all there was (free-floating self-replicating bits of dna/ rna).

    one form of this proto-life adapted oil micelles as their housing for a stable environment, and became cells. the ones that remained free-floating eventually co-evolved and then devolved such as first they borrowed energy from their proto-bacterial neighbors, and then became entirely dependent on them to replicate

    so, in a way, viruses are the first forms of life, just devolved to be dependent on "higher forms" of life to exist today

    in other words, one day, we were all viruses, but a special kind of virus that doesn't exist any more: a virus that needs no host to replicate, a virus that can self-replicate

    viruses have lost that ability today, they've devolved into parasites of cells, once their ancient prehistoric neighbors in the primordial sea they borrow energy from, now their hosts they need to survive

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
    1. Re:here by Dunbal · · Score: 1

      and then devolve

            They don't "devolve". This would somehow mean that the precursor was "better" to your judgement because more functions means "better" right?

            They evolve. As they evolve, redundant functions are selected against, and the organism becomes more specialized at what it does. This is a more sophisticated organism, even if it does less. Remember that your judgement is always going to be biased - it's human nature.

            Using the term "devolution" implies that somehow evolution can be made to work backwards, which is impossible.

      --
      Seven puppies were harmed during the making of this post.
  76. Re:beleive what you want... by someone300 · · Score: 1

    Mutations are not always destructive (whatever that means anyway). Mutations are just.. well... mutations. They can increase or decrease chance of reproduction, or not affect it, and naturally, the ones that increase the chance for reproduction are more likely to be passed onto decendents of the squirrel.

    If mutations are always destructive, how come there are people with different colours of hair and skin?

  77. Re:beleive what you want... by Anonymous Coward · · Score: 0

    yes but how did the living cell get arranged in the first place? it too was arranged before it became alive. even a "simple cell" is incredibly complex, with all sorts of functions that would all fail if they were not in place together, including replication systems.

  78. You're confusing her with Flo by EmbeddedJanitor · · Score: 1

    In winter people with blocked noses always phone in to work and say they're in bed with Flo.

    --
    Engineering is the art of compromise.
  79. Re:beleive what you want... by Dunbal · · Score: 1

    Some mutations are beneficial. Most are neutral.

          And the ones that are detrimental we call "disease".

    --
    Seven puppies were harmed during the making of this post.
  80. achooo! by micromuncher · · Score: 1

    I sneeze therefore I am.

    --
    /\/\icro/\/\uncher
  81. Mod parent A++, very funny by Anonymous Coward · · Score: 0

    rent A++, very funny

  82. Virus or single Celled Organism by Anonymous Coward · · Score: 0

    what came first virus or single celled orgasm?

  83. Re:How many evolutionists does it take... by Anonymous Coward · · Score: 0

    How may IDers does it take to change a lightbulb?

    None.
    Given enough time, God will screw it in for us!

  84. Gallery Link by truckaxle · · Score: 1

    For a better view check out the large-virus Gallery. I hate it when people publish articles about something visual but only give you a little low-res image to accompany the article.

    So are extant viruses sorta like the biological equivalent of big bang background radiation?

  85. Re:beleive what you want... by someone300 · · Score: 1

    Oh.. if only there were answers to your questions then maybe it'd be easier to sleep at night... they sound a bit nihilistic.

    I'm vegetarian since I think that, being a human, it's possible to try and cause less harm to other animals without causing harm to ourselves.. yet occasionally I find myself questioning it on "Well we evolved to be like this so why shouldn't we?". It's a bit like the taking animals into zoos to breed them up and release them back into the wild. Is there any point releasing seemingly evolutionally deficient animals back into the wild? Are we taking them in because essentially it's humans causing them to go extinct and we have "morals"? God knows... (maybe).

    Sometimes I wish I was religious.. then I could believe that there is one correct path. It'd be so much easier, but you can't believe in something you don't believe in...

  86. A Virus by Pfau · · Score: 1

    I'd like to share a revilation with you that I've had during my time here. It came when I tried to classify your species, and I realised that you're not actually mammals. You see, every mammal naturally develops a natural equillibrium with it's environment, but you humans do not. You move to an area, and you multiply, and you multiply untill every natural resource is consumed, and the only way to survive is to spread to a new area. There is another life form on this planet that follows the same pattern. A Virus. Human beings are a disease, a cancer of this planet, and we are the cure.

  87. Re:Here we go again...back 2 school by micromuncher · · Score: 2, Informative

    While I find the idea that life originated from some primordial soup mix to be distasteful at best and downright inconceivable at worst...

    Doesn't everyone in biochem201 do Miller's experiment?

    http://www.chem.duke.edu/~jds/cruise_chem/Exobiolo gy/miller.html/

    The unfortunate thing about the skeptics is that they seldom want to take into account 1) time, and 2) chaos.

    --
    /\/\icro/\/\uncher
  88. Virus or Single Celled Organism by Mel+Tom · · Score: 1

    what came first Virus or Single Celled Orgasm?

  89. I.D. just the sex-it-up portion of the article by paco3791 · · Score: 1

    In my opinion this article doesn't need any sexing up. It really is a fascinating read. The general thrust of the article is that this large virus bears a striking resemblance to a primitive cell nucleus. The theory goes that back in the dawn of time a large complex virus, similar to the one discovered, infected a nucleas-free ameba (I had no idea there where single "celled" organisms that didn't have a nucleas!) and instead of using that environment to replicate, and destroy the host in the process, it stayed on and integrated itself into the host organism, evolving into the nucleas.

    This makes perfect sense to me and so does the other premise the article puts forth. That because the virus inhabits a very strange middle ground between life and non-life, it is thereby a perfect candidate for the very precursor to life; the missing link if you will. I am having some trouble thinking of ways a virus could replicate without any kind of cells or bacteria around, but that doesn't mean there wasn't/isn't one.

    I say, onward great march of discovery!

    1. Re:I.D. just the sex-it-up portion of the article by truckaxle · · Score: 1

      This is really an extension to the Endosymbiotic theory. Where the existence of mitochondria and other organelles are really vestiges of prokaryotic parasites that became symbiotic and that the parasite's repoduction cycle became aligned with the repoduction of the host cell, and the two became one.

      Carried to the extreme this theory indicates that all cellular and multi-cellular life are really just parasites that finally got along.

  90. Re:How many evolutionists does it take... by Dunbal · · Score: 1

    God will screw it in for us!

          Yes I hear this is going to happen "soon".

    --
    Seven puppies were harmed during the making of this post.
  91. MOD PARENT INFORMATIVE! by Spy+der+Mann · · Score: 1

    Apparently this was the cause of the weird title article. Good job! :)

  92. Aliens? by bobalu · · Score: 1

    I don't see any reference to aliens when searching their site. Surely probability-wise if not evolution then we were cloned by visiting creatures. After all, we know how to do some space travel, we know how to do some cloning, eventually we'll be capable of it ourselves. Then we'll be God on some poor dumb moon somewhere.

    That's OK with you though, right? Wouldn't ruffle any feathers at the Discovery Institute?

    Be honest, they may not be young-earthers, but the Discovery Institute was created by an old lawyer to promote the Christian God as creator of the Universe. That's a fact.

    --
    The revolution will NOT be televised.
    1. Re:Aliens? by Bryansix · · Score: 1

      That's OK with you though, right? Wouldn't ruffle any feathers at the Discovery Institute?

      I cannot speak for the Discovery Institute but personally it would be fine with me if that was the case. While it is true that I hold personal beleifs about the existance of God; I could care less if ID promotes him. The reason I support ID is to stimulate intelligent discussion regarding the orgin of all species of life. Science is just numbers and cannot explain the orgin of species in and of itself. Some philisophical approach must be used to explain what we do not really understand as of yet. Neo-Darwanism disgards philisophy though and that is why I do not beleive in Neo-Darwinism.

    2. Re:Aliens? by Shadowin · · Score: 1

      Since "neo-darwinism" disregards theological philosophy, you don't believe it? Last I checked, all science does the same. So, do you reject quantum mechanics? How about relativity?

  93. Re:beleive what you want... by VultureMN · · Score: 1

    Read "The Blind Watchmaker", or some other good book that explains what probably happened.

    Fuck, man. Just because you're too lazy to go inform yourself doesn't mean IT CULDNT HAV HAPENED ITZ 2 COMPLEZX!

    Besides, claiming a Divine Creator just pushes the question back a bit, but doesn't solve anything. If GOD created life, where did GOD come from? Something as complex as an eternal, all-powerful being surely couldn't have just popped into place.

    Unless GOD evolved from something else...

  94. Giant Mimi by Nom+du+Keyboard · · Score: 1
    Giant Mimi, huh. And what other giant Mimi's are out there?

    Well for starters there's the one that used to be married to Tom Cruise. Quite a pair of Mimi's there.

    --
    "It's the height of ridiculousness to say for those 9 lines you get hundreds of millions."
  95. You are incorrect by Seoulstriker · · Score: 1

    Clearly, the lower-activation energy of phosphodiester bond formation between nucleotides (RNA) causes favorability over the much higher activation energy for peptide bonds.

    Prions are defective proteins. You appear to be latching onto an idea and running with it rather than understanding the science behind it, much like Darwinists do with evolution.

    In the context of proper science, your post makes no sense.

    --
    I am defenseless. Use your button. Mod me down with all of your hatred.
    1. Re:You are incorrect by Dachannien · · Score: 2, Interesting

      Instead of trolling, why not try to educate.

      The use of the term "prion" might not be absolutely correct since it was originally used to describe an infectious agent. However, the idea that a protein with two conformations - one as produced by a simpler biological process, and another which can alter a protein that's in the first conformation by putting it in the second conformation - might be fundamental to early biological systems, is a valid hypothesis.

      In fact, it's possible (perhaps likely) that the first self-propagating (and therefore, arguably biological) chemical systems had nothing to do with RNA at all. But once the RNA (and then DNA) regimes took over, surviving instances of those chemical systems most likely were food for more advanced systems, which explains why evidence of the earliest parts of life's evolutionary trajectory is so hard to come by.

  96. Re:beleive what you want... by Anonymous Coward · · Score: 0

    imagine being a character in world of warcraft, imagine what the programers must seem like to you (the character). living in a dimention far greater than your own. where 3D is an illusion but to you seeming solid as a rock, created from nothing. talk about far fetched right?

  97. Hypotheses and theories and laws, oh my! by MrNougat · · Score: 1

    http://wilstar.com/theories.htm

    When did "theory" get redefined to mean "Here's something you can take as true, or make up anything you like"?

    Furthermore, I would graciously request that the Creator (or spokespeople thereof) explain to me what my tailbone and appendix are for.

    --
    Web 2.0 == Giant Blogspam Circle Jerk
    1. Re:Hypotheses and theories and laws, oh my! by cagle_.25 · · Score: 1
      Your tailbone is so that you don't get spina bifida .

      Jes' sayin'.

      --
      Human being (n.): A genetically human, genetically distinct, functioning organism.
    2. Re:Hypotheses and theories and laws, oh my! by Kelson · · Score: 1

      Furthermore, I would graciously request that the Creator (or spokespeople thereof) explain to me what my tailbone and appendix are for.

      And why squids have very similar eyes to ours, but "designed" correctly (with nerves behind the retina instead of in front, so they don't have a blind spot).

    3. Re:Hypotheses and theories and laws, oh my! by 123abc · · Score: 1

      Have you correctly designed an eye before? If so, get that patent application sent in!

      Animals with inverted retinas can have amazing vision (raptors for example) and it's hard to argue that their eyes are poorly 'designed'.

      Anyhow, if you need some tools to help you get started implementing a proof of concept for your design, this link might help:
      http://mcdb.colorado.edu/courses/3280/lectures/cla ss14-2.html

  98. Regardless of molecular bond strength... by Pup5 · · Score: 1


    I have had similar thoughts to Doc Ruby. We used to think of viruses as much different that bacteria because there was no cell, no metabolism... or whatever. Virii were simple... almost just chemicals. Well, although prions are a very specific version, why can't we stretch our minds to think of proteins in the same lineage?

    It begins to make you realize that life, as amazing as it is, might just be the evolution of chemical reactions such as simple proteins.

  99. Re:beleive what you want... by MadUndergrad · · Score: 1
    I believe the point in trying to keep species from going extinct isn't so much charity to a deficient creature, as it is trying to maintain genetic diversity.

    If everything besides humans, roaches and wheat went extinct, you'd have a pretty sorry ecosystem. Not only would it be less able to cope with changes and disruptions, but it wouldn't be nearly as able to spin off most, possibly more successful, organisms.

  100. Re:Brings to mind a SF novel I read last year . . by Anonymous Coward · · Score: 0

    why, none thanks you!

  101. Seriously, guys... by quizzicus · · Score: 1
    Why does every single biology-related article have to devolve into this stupid ID debate? Is it for the benefit of the dozen creationist proponents on ./, or the hundreds of evolution "believers" who want to show everybody else how "smart" they are. Regardless, all it does is provide some instant gratification for those who like to argue, and impedes the rest of the readers, who actually want to have an intelligent discussion on scientific discoveries.

    Want to prove me wrong? Go ahead. Stand up and reply to this message, and tell me that your fundamental worldview has been changed as a result of this ID/evolution Slashturbation. I think the messages that follow (or more likely don't) will speak for themselves.

    And moderators, do your part. If the discussion fails to include anything relevant to the article itself, you need to put it in its place with offtopic mods.

    Finally, if you're frustrated like I am, then speak out! Otherwise, the inteligent discussion we enjoy on Slashdot will decompose into the same juvenille, knee-jerk flamewars you find on the rest of the web.

    1. Re:Seriously, guys... by Anonymous Coward · · Score: 0

      It scares the hell out of me.

      That so many people think ID is on par with a scientific theory like evolution is insane. It shows a complete lack of understanding of science.

      The ID debate shows the power of propaganda.

      A SCIENTIFIC theory has been proven beyond a reasonable doubt.

      I am a biochemist

    2. Re:Seriously, guys... by Kelson · · Score: 1

      Otherwise, the inteligent discussion we enjoy on Slashdot will decompose into the same juvenille, knee-jerk flamewars you find on the rest of the web.

      I hate to say it, but I think you're about 5 years too late for this site...

    3. Re:Seriously, guys... by jericho4.0 · · Score: 1

      Every day, I pray to God that the rapture will come and take all these idiots away.

      --
      "A language that doesn't affect the way you think about programming, is not worth knowing" - Alan Perlis
  102. Article misplaced something, not sure what. by jd · · Score: 1
    It was stated as a direct inference that because the precursor to mimivirus would have infected proto-cellular life, that it must be related to the formation of eukarytes. Now, I can certainly buy the argument of different types of life merging, but there is no cause-and-effect mechanism given. It is stated, but no mechanism or evidence is presented.


    Then there is the issue of mitochondrial DNA, which is non-nuclear DNA that has merged into modern cells late on in the cellular picture. Are they implying that mitochondrial DNA was a virus that got stuck in a nucleic cell, or that the nucleus is the foreign part that infected a non-nucleic mitochondrial cell? Or maybe those were two independent cells where one had been infected by this virus, and then the cells (as cells) combined to form a chimera.


    Three ways to interpret a single article, with minimal knowledge of what possibilities exist. An expert might easily find hundreds, if not thousands, of interpretations of events. Of course, there is the question of whether that matters. I would say yes. If you have a totally generic theory like that, it is unfalsifiable, because no matter what evidence you come up with, you can twist the meaning of the theory to fit.


    Am I saying that they're wrong? No. It is self-evident that "life" and "non-life" are two regions on a continuum that has no discontinuities. There is therefore a third region, which I'll call "semi-life", which exists between those two regions. Whatever point you pick in the "semi-life" region, you will find something that has non-life attributes between that point and the start of the "life" region. Likewise, there will also be something, somewhere, that has life attributes between that same point and the "non-life" region. Given that, it would seem fairly obvious that viruses are probably a major component in the "semi-life" realm and probably had some role in the stepwise refinement process we call evolution.


    The lack of a testable hypothesis, the wooliness of the conjecture, the lack of discussion on mitochondria - these tell me that the paper is grossly inadequate. NOT necessarily "inaccurate", just inadequate. The quality of the work may well be there, but you cannot determine this from the quality of the writing, which read like tabloid journalism. People whose idea of news is the UK's "The Sunday Sport" are unlikely to be interested in microbiology and the chimerical nature of modern cells. It is unclear how many could even spell "microbiology" or "chimerical" with their concentration absorbed on the pictures.


    Slashdot and K5 have excuses for stories that aren't "perfect" - they're not supposed to be. Nobody (sane) subscribes to Slashdot in the expectation of the next Einstein or the next Arthur C Clarke publishing vivid, powerful, truly revolutionary stories there. Although said stories would almost certainly be covered. Maybe twice in the same day. When science journals start to resemble a cross between a teenager's blog and some advertising hype for a paperback novel, though, I have to wonder why they're bothering. Those who can understand the subject well enough to appreciate it fully will be repulsed by the pop style. Those who like the pop style are unlikely to understand a word of what was said.


    Probably the greatest hope for scientific journalism is if a law is passed banning the writing of academic papers when under the influence of hallucinogens.

    --
    It's a small world and it smells funny; I'd buy another if it wasn't for the money; Take back what I paid (SoM)
    1. Re:Article misplaced something, not sure what. by Thing+1 · · Score: 1
      Probably the greatest hope for scientific journalism is if a law is passed banning the writing of academic papers when under the influence of hallucinogens.

      I've written 100% of my academic papers under the influence of hallucinogens, you insensitive clod!

      (Well, 100% of zero is still zero, and I've never taken hallucinogens...)

      --
      I feel fantastic, and I'm still alive.
  103. Obligatory Agent Smith... by Anonymous Coward · · Score: 0

    I'd like to share a revelation that I've had during my time here. It came to me when I tried to classify your species that I realized you aren't actually mammals. Every mammal on this planet instinctively develops a natural equilibrium with its surrounding environment, but you humans do not. You move to an area and you multiply, and multiply until every natural resource is consumed. And the only way you can survive is to spread to another area. There is another organism on this planet that follows the same pattern. Do you know what it is? A virus. Human beings are a disease, a cancer of this planet. You are a plague, and we...are the cure. - Agent Smith (The Matrix)

  104. Some problems by Michael+Woodhams · · Score: 1

    The article seems to be stretching too far beyond the facts in many places. In particular:

    Moreover, certain signature Mimi genes, such as those that code for the production of the soccer-ball shape of its capsid (an outer protein coat common to all viruses), have been conserved in viruses that infect organisms from all three of the domains, particularly in eukaryotes. The implications of that finding are truly radical: that Mimi, or a Mimi-like ancestor, emerged prior to the three other domains and played a key role in inventing the very cells of which humans and all complex cellular life-forms are made.

    I can think of three alternative explanations: convergent evolution (it is such a good protein design that multiple viruses have developed it independently), horizontal gene transfer (e.g. a virally infected amoeba eats a virally infected bacterium. Virus particles are released which contain DNA from both of the original viruses) or host switching (e.g. a bacterium virus "learns" to infect amoebae.) Host switching is problematic, because the domains use slightly different genetic codes.

    How can they call genes "signature Mimi genes" and also claim they are in many other viruses? This is contradictory.

    --
    Quattuor res in hoc mundo sanctae sunt: libri, liberi, libertas et liberalitas.
    1. Re:Some problems by Anonymous Coward · · Score: 1

      While you have some decent speculation, those suggestions really aren't all that feasible.
      The convergent evolution is easily ruled out. One simply needs to compare the sequences between related caspids to see that much of the basic sequence is conserved. I am sure that the researchers have used BLAST and other computational tools to determine the phylogenetic similarity in these organisms. These are not examples of convergent evolution, such as the wings of birds and insects; it is an identical mechanism, slightly tweaked over time by evolution.
      Horizontal gene transfer is possible, but simply unlikely: the mimivirus would more likely have had the gene in its ancestral sequence (remember that the external protein coat is one of the most critical elements for viral survival while it is outside of the cell, just as a cell membrane/cell wall is for the bacterium) than have acquired it at a later point.
      Regarding the host switching, as you mentioned, it is rather difficult to adapt a bacterial virus for eukaryotic infection. This all points to evidence of the viruses evolving along with the 3 branches of the phylogenetic tree, making special adaptations as their hosts changed. There has to be some point at which the same virus could infect multiple life forms, and that is most likely the point in evolution at which there was no distinction between eukaryotes, archaea and prokaryotes.

    2. Re:Some problems by Michael+Woodhams · · Score: 1

      I haven't read the real paper (as opposed to the linked pop-sci article) so I really don't know how good their data is, in particular how strong the argument for homology rather than convergent evolution is. (Nor would I be very confident at interpreting their argument - I've used BLAST before, but only at the nucleotide level, on ncRNAs. I'm not so familiar with proteins. I'm also not very familiar with viruses.)

      They may well be right, but I bet there will be many who contest the "proof" that Luca had viruses.

      Host switching could come from a combination of viruses: a eukaryotic virus accidentally incorporates a bacterial virus. I then starts infecting bacteria, and loses the eukaryotic genes, but keeps the old membrane.

      I had been thinking that detectable homology from pre-LUCA was unlikely in a virus, but I'm more used to RNA viruses that DNA ones, and we do have many proteins in bacteria/eukaryia with homology from pre-LUCA. Do DNA viruses have similar rates of evolution in key proteins to cellular life?

      --
      Quattuor res in hoc mundo sanctae sunt: libri, liberi, libertas et liberalitas.
    3. Re:Some problems by Anonymous Coward · · Score: 1

      I concede regarding the host switching, although it would probably not be by simple viral "incorporation." The structural proteins could at some point have been conserved as the actual viral load of DNA/RNA would be altered in some bacterium by chance infected with 2 viruses.
      Regarding BLAST, the structural biology tools are well-developed to analyze homology at a nucleotide, sequence and (with other tools such as MAMMOTH protein alignment server) even at the tertiary structure level.
      Regarding DNA vs RNA viruses, the RNA viruses are much more error-prone since the RNA polymerase itself makes many more errors (maybe around 1/10^5) than the DNA polymerase, which has the entire error-correcting nucleotide repair/excision mechanism on its side to reduce errors to 1 in 10^9 base pairs.

  105. Re:beleive what you want... by Anonymous Coward · · Score: 0

    There is another type of squirrel that breeds faster, is sturdier and more adaptable, and remembers where it stores its stuff better. The growth of the gray squirrel population squeezes out the population of the red. It is natural selection at its finest.

    point 1:

    it took how many billions of years for this decline to happen? boy, evolution *is* a slow process.

    point 2:

    the possibility of extinction isn't at issue. you have to prove that the red squirrel was, at some point in time, not a squirrel or, in the future, not a red squirrel.

    if macro-evolution were true, odds approach unity that the red squirrel would be toast after all these millions of years.

    you can't show an instance of point 2, so you don't.

    rather, you proof text some nonsense and try to spin it as something it is not. this reminds me what the religious folks do when they try and proof text their pet beliefs onto the scriptures.

    macro-evolution may well be wholly or partially true, but if it was as obvious as some like to say, people like you wouldn't be so irrational when explaining it.

    btw, i find the nonsense you've shared to be the norm, so don't feel too bad.

  106. In related news... by lengau · · Score: 1

    In related news, many famous virus developers, including the inventors of the mydoom virus, are being hired by artificial intellicenge labs across the world.

    --
    I really wanted to change my sig to something witty, but all I could come up with is this.
  107. My dupe alert is ringing... by cyclop · · Score: 1
    --
    -- Patent no.123456: A way to personalize /. comments with a sig attached to the end.
  108. wrong by circletimessquare · · Score: 1

    devolve means to get less complex

    when i say a human is more complex than a bacteria, this is not prejudice, it's just a simple fact

    likewise, when you say something devolves, there is no judgment or bias involved at all

    lampreys are not better or worse than their ancestors, but they are certainly less complex, as all parasites are, because they are shedding functinality they no longer need to survive

    they have DEVOLVED

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
    1. Re:wrong by juhaz · · Score: 1

      devolve means to get less complex

      No, actually it means no such thing. If you want to talk about something get less complex, how about you say "get less complex" instead of assigning new and misleading meanings to words?

      likewise, when you say something devolves, there is no judgment or bias involved at all

      When you say something devolves, there is bias involved since you're implying devolving is some kind of opposite of evolving. Which it's not, because evolution does not have a direction and so doesn't have an opposite.

      http://en.wikipedia.org/wiki/Devolution_(fallacy)

  109. not true by Britz · · Score: 1

    The earth (according to bible studies) was created 4000 BC, if you take it literally. I even met a nutcase who did while I spent a High School year in California in the 90's (I am German). I didn't understand this at all, but nowdays it wouldn't astound me as much.

    Anyways, the tale of Jesus is about 2000 years old. He was/is a jew. So christianity is a jewish sect strictly speaking. The old testament was taken from (or is) the jewish tanakh, which is much older. I don't know exaclty how old, but I believe Genesis (which is the part that contains the "fable" that you are referring to) is much older.

    Why does such a blatant factual error get such a high rating? I always thought the US was so religious? Mmmh Slashdot, not the stereotype, mmmh. (I like)

    1. Re:not true by Physician · · Score: 1

      You even met one in high school, as if they're so rare? I don't know how things are in Germany, Hauptmann, but there are millions upon millions of Americans who believe in intelligent design.

      --
      Does God treat us as servants or friends? Check my homepage.
  110. Re:beleive what you want... by Anonymous Coward · · Score: 0

    Well, that falls more closely to the Matrix theory than to the God theory.

  111. So that means... by slashname3 · · Score: 1

    So that means that God is a virus?

    Cool!

    1. Re:So that means... by geekoid · · Score: 1

      or a MEME. . .

      --
      The Kruger Dunning explains most post on /. http://en.wikipedia.org/wiki/Dunning%E2%80%93Kruger_effect
    2. Re:So that means... by BBobberson · · Score: 1

      Sure, the symptoms are evangelizing and stupidity.

      --
      12 steps is too long. My ideal plan is: 1) Quit 2) Relapse 3) ??? 4) Profit!
  112. Not necessarily true by ArcherB · · Score: 0

    Nothing will change ID people's minds.

    That's not necessarily true.

    The way I understand evolution is that it is driven by mutation. For example, giraffes had short necks. Every now and then, a long necked giraffe was born, but couldn't graze that well on grass and was generally unsuccessful, until there was suddenly no more grass anywhere the giraffes lived (like all of Africa) and those with long necks that were able to eat leaves thrived(because trees were mysteriously not affected by whatever killed all the grass), and the short-necked giraffes died off.

    While this story seems plausible, in order for Darwin to be correct, every species would have to come into existence because of some catastrophe that causes it's non-mutated parents to die off. I say this because no one can show me two distinct species (short and long necked giraffes) where one had evolved from the other... Nowhere on earth. Humans, chimps and baboons both evolved from some great-grandparent species, but none of these are around... and none of the species that existed between us and them exist either. They are all mysteriously extinct, for all species, everywhere on the plantet, leaving no fossil records of any kind.

    In other words, not only is there no missing link between humans and our ancestors, but there is no missing links for any animals, past or present. You find me one species and it's direct ancestor and maybe I'll change my mind. But the way it stands right now, I've seen about as much evidence for evolution as have for some sort of ID.

    --
    There is no "I disagree" mod for a reason. Flamebait, Troll, and Overrated are not substitutes.
    1. Re:Not necessarily true by Anonymous Coward · · Score: 0

      I don't really understand your post, especially your second and third paragraph. What exactly do you mean by:

      They are all mysteriously extinct, for all species, everywhere on the plantet, leaving no fossil records of any kind.

      No fossil records?

      As well as:

      In other words, not only is there no missing link between humans and our ancestors, but there is no missing links for any animals, past or present. You find me one species and it's direct ancestor and maybe I'll change my mind.

      No missing links? Well there are missing links but if you assert there are no missing links, then you should be able to find millions of examples "one species and it's direct ancestor".

      I guess I just don't get what you are getting at. I am guessing your an ID person but your post is weird and contradictory.

    2. Re:Not necessarily true by ArcherB · · Score: 0
      I don't really understand your post, especially your second and third paragraph. What exactly do you mean by:

      They are all mysteriously extinct, for all species, everywhere on the plantet, leaving no fossil records of any kind.


      What I mean is that there are no two distinct species living on earth right now that are next to eachother on the evolutionary ladder, nor do their fossils exist.
      According to evolution, man (and other primates) evolved from some ancient primate that no longer exists. Along the way, there were several non-human species that make up the branch between "Grandpa-Primate" to human. I mean, we did not evolve directly from this ancient primate directly into people, there were steps along the way. This is true for all animals.
      My question is, where did all these "mid-level" species go? Why did they all disappear? Where is all the fossil records for the chain species that must have existed from the between the "ancient primate" and now (missing links)? All missing links, which must have existed between each species and the each species that preceded it along the evolutionary ladder, have become extinct, taking all records of their existence with them. The only fossils we have are "off-shoots" of the evolutionary tree that leads to where we are now. For example, we are not decendents of neandrethals, but closely related. Neandrethals are an offshoot of the evolutionary branch that leads to man. What creature are both we and the neandrethals decended from? Why did it go extinct all over the world? Where are the rest of the fossils from all those creatures that make up that branch?

      In other words, not only is there no missing link between humans and our ancestors, but there is no missing links for any animals, past or present. You find me one species and it's direct ancestor and maybe I'll change my mind.

      No missing links? Well there are missing links but if you assert there are no missing links, then you should be able to find millions of examples "one species and it's direct ancestor".

      Evolution asserts there there have to be missing links that connect one species to the next. Otherwise, species such as man, would just "spring up", as if designed, stangly enough, that is exaclty what the fossil records show. If evolution were true, we'd see fossils of some "near-human" that existed a few million years before man showed up and it should start dwindiling after man showed up. No such creature exists. Man just kinda showed up. What creature did man evolve from? What creature was the next step up on the evolutionary ladder, where are its fossils and why did it become extinct?
      Evoluation states that one species mutates from another and gains favorable traits. Why does the parent always become extinct and why can no one find what was the "parent" of humans, dogs, cats or whatever? This is true for all animals. A man, a dog and a cat have a common ancestor, what was it? Where are its fossils? Where is the common ancestor of a gazelle and a white-tail deer? And again, why did all these ancestors go extinct all over the world?
      --
      There is no "I disagree" mod for a reason. Flamebait, Troll, and Overrated are not substitutes.
    3. Re:Not necessarily true by fimbulvetr · · Score: 1

      While you do pose good questions, good questions that have puzzled the scientific community for years, I think that you do not understand just how rare fossils are.

      Only under exceedingly rare conditions does the potential for a creature to become a fossil exist. Even then, it's exceptionally rare for all of the right things and non of the wrong to happen to a fossil. This of course, still doesn't account for us finding them. Sure, we may have done a significant amount of scanning on the surface of the earth (the present surface, that is), we haven't done significant amount 1 foot, 2 feet, 3 feet, etc, below that.

      It would be a good time to pull out the Sagan and say: "absence of evidence is not evidence of absence".

      All in all, Fossils can probably never be as the sole source for evolutionary theory, but just as one cornerstone of it.

      To call the theory bunk because we don't have hard proof of things is exact, gradual steps for every single attribute is absurd, especially in light of the rarity of fossils. If we can lay out logical steps of evolution between, say, Homo erectus and homo sapians, with _rational_ steps and logical conclusions, I think it'd be hard for anyone, maybe 90IQ+, to argue.

      p.s. Man didn't just kind of show up. Check this out: http://en.wikipedia.org/wiki/Human_evolution Pay close attention to the Miocene period.

  113. Mitochodrial DNA by Anonymous Coward · · Score: 0

    One of the leading theories about the origin of the mitochondria in eukaryote cells is that they came about as the result of endosymbiosis between a bacterium and a proto-eukaryote cell.

    Recall the function of mitochondria: to generate energy for the cell in the form of ATP. Some bacteria have this capability. It is believed that, somehow, some such bacteria intermingled with some proto-eukaryote cells and got taken up by them, that is, captured inside a vacuole. This produced a beneficial arragement where the host cell got the energy produced by the bacteria, and the bacteria got a host cell that kept it fed. As this symbiosis continued through generations, the bacteria and host cells became more and more dependent on one another, to the point where neither could live without the other. To the modern observer, therefore, the mitochondria look just like another organelle in the cell.

    There is various evidence for this hypothesis, including:
    ---The mitochondria have double membranes; presumably, one was the membrane of the bacterium and the other was the vacuole membrane.
    ---Each mitochondrion possesses a single, circular chromosome, just like a bacterium.
    ---We find other examples of endosymbiosis (inside-symbiosis) in nature, where the integration of the host with the smaller cell is not complete, and each can live independently.

    Just thought I would mention this since you brought it up.

    1. Re:Mitochodrial DNA by jd · · Score: 1

      I'm not joking when I say your post was a few hundred times more precise and meaningful than the entire original article. Now, all you have to do is get an article that is uniformly of that quality published on the mimivirus, and you'll be set for life.

      --
      It's a small world and it smells funny; I'd buy another if it wasn't for the money; Take back what I paid (SoM)
  114. Corollary to Godwin's Law: Slashdot's Contempt by Anonymous Coward · · Score: 0

    Every time an article get's posted to Slashdot that has some reference to Evolution, someone brings up how it waves something denigrating in the face of Intelligent Design proponents. I was considering posting something to the effect of suggesting that such repetition be noted and logged as a corollary to Godwin's Law except in this case,
    "As any discussion on Slashdot involving biology or any evolutionary science progresses, the odds of Intelligent Design being referenced, especially in a mocking or disparaging tone, approach 1:1."

    I find it strangely appropriate that the "please type the word in this image" word for this post is "Contempt". Perhaps that was because an intelligent designer anticipated the moment this poster would need a word to describe the aforementioned phenomenon.

  115. Re:beleive what you want... by Mad+Hughagi · · Score: 1

    I'm surprised no one has brought up the implications this has with respect to theories like Panspermia.
    A virus could withstand extrasolar transit much better than even the most hardened extremophile bacteria.

    --
    UBU
  116. Uh indeed by Anonymous Coward · · Score: 0

    Hmm, I wonder. If a bunch of scientists could travel back in time "2 thousand years ago" to illuminate the unlearned non-scientific heathen, how would they explain "modern science"? Without sounding like a "bunch of idiots" that is.

  117. Cool! by Descalzo · · Score: 1
    "science proving it's bunk"

    I'd like to see that proof! I didn't think it had progressed that far. I am thinking about it, and I have to admit that I don't understand the scientific method enough to know how you would even begin to prove it.

    --
    I cried real tears when Li Mu Bai died.
    1. Re:Cool! by failure-man · · Score: 1

      It's fairly easy to test whether a hypothysis is true. Finding the right hypothysis is the tricky bit. Science doesn't have the answer yet, but it knows quite well that the old testament doesn't either.

    2. Re:Cool! by Descalzo · · Score: 1

      Thank you for clarifying.

      --
      I cried real tears when Li Mu Bai died.
  118. Agent Smith was right? by v3xt0r · · Score: 0

    Agent Smith: I'd like to share a revelation that I've had during my time here. It came to me when I tried to classify your species. I realized that you're not actually mammals. Every mammal on this planet instinctively develops a natural equilibrium with the surrounding environment, but you humans do not. You move to an area, and you multiply, and multiply, until every natural resource is consumed. The only way you can survive is to spread to another area. There is another organism on this planet that follows the same pattern. A virus. Human beings are a disease, a cancer of this planet, you are a plague, and we are the cure.

    Agent Smith: Do you hear that, Mr. Anderson? That is the sound of inevitability.

    Agent Smith: Never send a human to do a machine's job.

    --
    the only permanence in existence, is the impermanence of existence.
  119. Some Clarifications by Anonymous Coward · · Score: 0

    -Some viruses DO have membranes, but they're taken from the host after it lyses. The membrane is typically from the nuclear envelope within the cell. So don't think they don't have the phospholipid goodness entirely. -Viruses are genetic-level parasites. The critters hijack a cell and has no sympathy for the cell. Even if a virus may integrate it's genetic data with a cell's, it will eventually bail out during bad times (but there are always exceptions). Technically, they will eventually kill the host.

  120. Welcome, Mr. Anderson by roman_mir · · Score: 3, Interesting

    The Matrix is definitely one of the most profound movies of all time. The dialog by Agent Smith has these words:

    I'd like to share a revelation that I've had during my time here. It came to me when I tried to classify your species. I realized that you're not actually mammals. Every mammal on this planet instinctively develops a natural equilibrium with the surrounding environment, but you humans do not. You move to an area, and you multiply, and multiply, until every natural resource is consumed. The only way you can survive is to spread to another area. There is another organism on this planet that follows the same pattern. A virus. Human beings are a disease, a cancer of this planet, you are a plague, and we are the cure.

    This may as well just be it - the actual truth.

    The discovery of Mimivirus lends weight to one of the more compelling theories discussed at Les Treilles. Back when the three domains of life were emerging, a large DNA virus very much like Mimi may have made its way inside a bacterium or an archaean and, rather than killing it, harmlessly persisted there. The eukaryotic cell nucleus and large, complex DNA viruses like Mimi share a compelling number of biological traits. They both replicate in the cell cytoplasm, and on doing so, each uses the same machinery within the cytoplasm to form a new membrane around itself. They both have certain enzymes for capping messenger RNA, and they both have linear chromosomes rather than the circular ones typically found in a bacterium.

    "If this is true," Forterre has said of the viral-nucleus hypothesis, "then we are all basically descended from viruses."


    Follow the white rabbi

    1. Re:Welcome, Mr. Anderson by Eli+Gottlieb · · Score: 2, Interesting

      Which white rabbi, all the Ashkenazic rabbis are white!

      Seriously, it's quite interesting, but here's an alternate theory: Life arose "spontaneously" in several places; such that not all life has a single common ancestor. If the environment was right for forming life, why couldn't it have happened multiple times and result in multiple trees of life?

    2. Re:Welcome, Mr. Anderson by roman_mir · · Score: 1

      Life arose "spontaneously" in several places - as I see, this is more likely than not. There probably were trillions upon trillions of combinations of 'life' happenning, certainly it is expected that in some cases results could lead to single cell organisms of higher order.

    3. Re:Welcome, Mr. Anderson by saltydogdesign · · Score: 1

      The Matrix is definitely one of the most profound movies of all time.

      Oh please, let's not ejaculate on ourselves, alright? The Matrix was a good movie with a nice little brain tingler at the center, but "one of the most profound movies of all time?" Next thing you'll be telling me that Socrates has got nothing on the Wachowsky brothers. Agent Smith made a metaphor that works ok if you are willing to ignore a few basic facts, like, say that the whole notion of "classification" and "species" is a human one. Good for him. What that speech really boils down to is "humans suck." Not exactly groundbreaking philosophy there.
      --
      // This is not a sig.
    4. Re:Welcome, Mr. Anderson by roman_mir · · Score: 1

      So show me the movies made by Socrates and then you can act all patronizing.

      I didn't say Matrix was the most original script. I said it was the most profound MOVIE. Then I made a joke about following the white rabbi, which obviously is a reference to the rabbit, as in Alice in Wonderland, which is an ongoing theme in that movie.

      Obviously Neo - The One, the 'savior', is just as metaphorical of the christ or buddah, as Luke Skywalker was, or Don Quixote de la Mancha.

      I can say the same thing about Servantes and his Don Quixote - it was the most profound book of all times, not that Socrates had no influence on the theme.

      --
      You have got no point.

    5. Re:Welcome, Mr. Anderson by saltydogdesign · · Score: 1

      It would really be pointless of me to start dragging out movies I think are more profound than The Matrix, so I'll just say that practically any random selection from Kubrick, Scorsese, Truffaut, Godard, Bertolucci, Bergman, Fellini, Kurosawa, Peckinpah, Woody Allen, or Altman would have a good chance of eclipsing the Wachowsky's movie insofar as insight on the human condition is concerned.

      I like The Matrix, and I think it's a fun movie, but philosophically it's a bunch of twadle. Just because the main character is a Christ figure doesn't make it profound. The Matrix raises a lot of questions that have been raised repeatedly (and more subtly) throughout the history of film (and philosophy), and then answers them in totally concrete terms. Q: How do we know what's real? A: Reality is gray and rusty, and machines are trying to kill you. What's profound about that?

      As an aside, your assertion that Cervantes' (if you're going to cite him, for God's sake learn to spell it) book was "the most profound book of all times" is just breathtakingly silly. I mean, have you even read every book that's ever been written? I rather doubt it. Don Quixote is one great book among many. Art is not a race. There is no winner, and only teenagers and magazine feature editors waste their time making top ten lists. Don Quixote is clearly better than, say, Quantum Leap: The Novel, but Don Quixote vs. Frankenstein? Apples and oranges.

      --
      // This is not a sig.
    6. Re:Welcome, Mr. Anderson by heavyVoid · · Score: 1
      "There is another organism on this planet that follows the same pattern. A virus."

      Actually, a virus is not an organism.
      "You move to an area, and you multiply, and multiply, until every natural resource is consumed."

      Any living thing without a predator tends to be a plague.

    7. Re:Welcome, Mr. Anderson by XMod · · Score: 1

      Any living thing without a predator tends to be a plague.

      That's why Smith said the machines would be the cure, they would be the predators.

    8. Re:Welcome, Mr. Anderson by roman_mir · · Score: 1

      It would really be pointless of me to start dragging out movies I think are more profound than The Matrix - I can agree that this is a matter of the taste. I will rephrase, to me the first Matrix is the most profound movie of all times and not because The One is the christ figure, or anything like that, but because it works well for me, as a computer programmer and resonates with the ideas that I have about this universe.

      All the other movie directors you used as examples, are all well, just too plain for my taste. So I should have said AFAIAC.

      As an aside, your assertion that Cervantes' (if you're going to cite him, for God's sake learn to spell it) - well, I read the book in Russian and I don't particularly like the Latin spelling of his name, so whatever.

      book was "the most profound book of all times" is just breathtakingly silly. I mean, have you even read every book that's ever been written? - no. But I did spend twenty nine years (that I remember) reading various books, and I mean I read more in a month than most people in years. Again, from my point of view Don Quixote is the most profound book and comedy of all times. In this specific case you will have tough time giving me a counterexample.

    9. Re:Welcome, Mr. Anderson by saltydogdesign · · Score: 1

      because it works well for me, as a computer programmer and resonates with the ideas that I have about this universe.

      I guess profundity is exclusive of universality. Given that most people are not computer programmers, "the most profound" is more than a bit of a stretch. Especially given that you are talking to a computer programmer who finds it trite.

      All the other movie directors you used as examples, are all well, just too plain for my taste. So I should have said AFAIAC.

      Fellini is plain? Kurosawa is plain? You have a strange notion of the word "plain."

      I don't particularly like the Latin spelling of his name

      Well then, by all means, just make up whatever spelling you like. I did my master's in music history, and I would have been slapped down had I ever written anything about someone named Chikoffski or Struvinskee.

      But I did spend twenty nine years (that I remember) reading various books, and I mean I read more in a month than most people in years. Again, from my point of view Don Quixote is the most profound book and comedy of all times.

      Your humilty is duly noted, as is your frantic backpedaling.

      In this specific case you will have tough time giving me a counterexample.

      The Canterbury Tales. Perhaps you need to narrow it down more. How about "the most profound Spanish comedy of the 17th century?" That I will accept unequivocally.
      --
      // This is not a sig.
    10. Re:Welcome, Mr. Anderson by roman_mir · · Score: 1

      Fellini is plain? Kurosawa is plain? You have a strange notion of the word "plain."

      didn't I say this? : All the other movie directors you used as examples, are all well, just too plain for my taste. Why should I reiterate things? Plain for my taste.

      Your humilty is duly noted, as is your frantic backpedaling. - if you have real arguments, please bring them up, otherwise this is just silly. Humility? I am being realistic when I say that I read more than most people. More than a book a week, every week. For a few decades now.

      All in all, It is my opinion that Cervantes (not to start another spelling war,) has created something in his D.Q., that is more profound than any other fiction of the past two and a half thousand years.

  121. Re:beleive what you want... by shaitand · · Score: 1

    Viruses on the other hand are far far simpler than cells and according to the article have been shown to have an evolutionary history. At some point it is likely that viruses could self-replicate and they can still readily adapt. We have seen evolution occur in viruses.

    There is far more in the article itself to refute your statement. Perhaps you should read it.

  122. meme theory by HelloKitty · · Score: 1

    google meme theory, and you'll find you're not joking... :)

  123. Where did the Aliens come from? by Anonymous Coward · · Score: 0

    n/t

    1. Re:Where did the Aliens come from? by Tatarize · · Score: 1

      Clearly the aliens which created life on Earth were created by other aliens.

      Now, the question becomes, where did THOSE aliens come from... obviously, those alien-creating-aliens evolved over millions of years via natural selection.

      Intelligent design does have the obvious problem of making it "turtles all the way down."

      --

      It is no longer uncommon to be uncommon.
  124. The IDers are not gonna like this.. by boingo82 · · Score: 1
    Viruses, long thought to be biology's hitchhikers, turn out to have been biology's formative force.
    Aiee! The creationists complained enough when scientists said humans evolved from apes. I'm sure they'll get their hackles up now! How insulting this new theory is. :tsk:
    --
    As a republican I feel it my responsibity to manufacture criminals. People need punished!
    1. Re:The IDers are not gonna like this.. by Anonymous Coward · · Score: 0

      Yeah

      still doesnt mention how the use of insertion mutations ,which destroy DNA information, fit in the picture!!

  125. Slashdot party!!!1 by bigmauler · · Score: 1

    (writes article about cool virus findings. Doesn't think it's cool enough so throws in needles "ID" buzzword and watches slashdoters have a jerk off party over ID bashing that detracts from the original article)

  126. Peter Watts ahead again by kadathseeker · · Score: 1

    Digitally anyway. His novel Maelstrom deals with artificial life developing from viral software . The first two books of his Rifters trilogy (Maelstrom being the second) are available for free here http://rifters.com/real/shorts.htm until they are reprinted this summer. Very, very good hard sf.

    --
    The 'Net is a waste of time, and that's exactly what's right about it. - William Gibson
  127. I, for one... by squizzz · · Score: 1

    ...welcome our new viral overlords.

  128. It's still a theory by thundergeek · · Score: 1

    "This is striking news, especially at a moment when the basic facts of origins and evolution seem to have fallen under a shroud."

    What facts? They are speaking of Macro-Evolution (the changing of one kind of species to another), which can not be observed, tested, or proven, and therefore is still a theory.

    If they are speaking of Micro-Evolution (the belief that dogs and wolfs share the same ancestor), then yes, I guess one virus turning into another would be fact.

    But to say that I am related to banana? And now it's a virus' fault? That's not science. It is, and always will be, a theory.

    Mod everyone flaim bait. This story reaks of it.

  129. Tom Ray's Tierra Suggested This by 4thamendment · · Score: 1

    The Tierra virtual life simulation from the early 90s exhibited some interesting, life-like behaviors. Parasitism was one of the early, and unexpected results of letting snippets of randomly mutating code operate. At times, the simulated primordial soup consisted primarily of virus-like entities, dependent upon others for their existence.

  130. Re:beleive what you want... by shaitand · · Score: 1

    Sometimes it seems like I'm the only one who does not have these questions anymore. The questions seem to stem from believing that there is a cosmic right or wrong or that one needs to reconcile such a thing. However there is nothing to support this idea.

    There is no right or wrong to evolution. Evolution does not have the goal of making the fittest survive, that is merely a side effect. If you rinse a glass with alcohol you have changed its environment, the things most fit in that environment will continue to be, and other things will change form as a result of interacting with the alcohol. Neither was stronger, one simply was resistant to change. Which is better, to be static or to change? The answer is that there simply is no better. Was it wrong to put in the alcohol? No. Was it right? No.

    Put some yeast in sugar water and the yeast will first destroy the sugar, producing alcohol (nature evolved the sugar into alcohol, see)the alcohol in turn kills the yeast. None of this is wrong. If the alcohol developed consciousness and killed yeast where it would save sugar from conversion or avoiding killing yeast and pooled on one side of the tub this would not be wrong either.

    The first illusion to dispel is right and wrong. There is merely cause and effect, no effect is any better than another unless you supply a 'goal' or 'motivation'. Of course there is no cosmic 'goal' or 'motivation'. If there were, we would all have the same goals, motivations, morals, and so forth. Fortunately there is no particular reason we need to imagine there being one.

    The next illusion is the separation of man from the rest of nature. Man is just another animal, like all others he has a set of characteristics and there are numerous complex organisms that function in a similar way to us. Harming a cow would be no more right than a man. See the first illusion if you are still wondering about how wrong harming a man is (this is why I am not a vegetarian).

    The question then is how far can we take that illusion? The great question of where do you draw the line? The answer is that you do not draw a line. The universe is composed of a constant flux and changing of states of energy. Matter is merely a subgroup of energy in states that remain stable in certain ways that allows us to interact with it (being composed largely of this sort of energy ourselves). If you follow this to its conclusion then you quickly realize that the distinction between living and non-living can not be defined because it is also an illusion. All matter is merely a pattern of energy in a subgroup of states whether regardless of what the human brain classifies it as.

    The human brain works by classifying and sub classifying all things around us. We never "know" anything, we merely label it, develop a model to describe our observations. We develop labels and classifications for behaviors we witness also and combine them to form the models. None of this is cosmic truth. It does however reveal why the above illusions exist. They exist because humans need labels like good and bad, right and wrong. Intelligence is the act of ordering. The first thing classified is self. Philosophy discovered this with "i think therefore I am". After classifying itself an intelligence must then classify characteristics of self. The very act of classifying the chaotic universe of "what is" requires artificial constructs like "right" and "wrong". How could one successfully order something that is not orderly without INVENTING patterns in the chaos?

    Master yourself. Realize that intelligence needs goals to drive it, master yourself by choosing those goals consciously instead of pretending they are chosen by cosmic consequence or innate morality.

    In summary, evolution is a side effect of the fact that nature is constant change of energy states. A change of energy in one state is a change of environment that results in the change of states of still more energy. Evolution can not be stopped or started, it can not be wronged because IT DOES NOT HAVE AN EN

  131. Re:beleive what you want... by mantar · · Score: 1

    Do we know the difference between macro- and micro-evolution in this discussion?

    --
    # man tar
  132. My guess would be that by iminplaya · · Score: 1

    it was the "karma sutra" virus.

    --
    What?
  133. Re:beleive what you want... by shaitand · · Score: 1

    Natural selection is true without question. Changes in environment cause extinction. Therefore those less suited to an environment are selected for extinction.

    As for macro-evolution it is also obvious. Macro organisms are composed of micro-organisms and micro-organisms evolve fast enough that we have watched the entire process again and again. This point has been clearly settled with the proof that virii are no less organism than single celled life. Since the macro-organism is merely a sum of its mico-organisms evolution in the micro effects an evolution in the macro.

    As for squirrels not being squirrels there is no need for any such non-sense. Squirrels were always squirrels because a squirrel is not a factual thing, it is simply a label we have given to a grouping of characteristics. If something mutated in a way that caused a vast change in those characteristics we would not classify it as a changed squirrel, we would classify it where the characteristics best fit or call it a new species. If squirrels are an evolutionary decendant of something else we clearly would call the something else by a different name more suited to its characteristics. For instance, if squirrels evolved from something we would call a bat, we would have called it a bat and would call any old skeletons of it that we found bats.

    Fortunately we have now sequenced the DNA of many lifeforms and conclusively proven that there are common roots.

    It is a lot easier to think these things out if you try to remember what is fact, and that nothing needs to resolve a conflict in classification systems we made up to be true. Most questions of philosophy have arisen in this manner. For instance, morals and ethics. Both are constructs that have been made up to provide direction for intelligence not universal truths with which the universe must be reconciled.

  134. Viruses without hosts? by JourneyExpertApe · · Score: 2, Informative

    Don't all extant viruses require hosts to replicate? How could viruses be the precursors to prokaryotes? If they existed before cells, wouldn't they, by definition, not be viruses?

    Disclaimer: IANAMicrobiologist

    --
    If you can read this sig, you're too close.
  135. Computer viruses as precursor to AI by Anonymous Coward · · Score: 0

    I, for one, welcome our Blaster decended Artificially Intelligent overloards.

  136. Re:beleive what you want... by Anonymous Coward · · Score: 0

    Perhaps we need to revise our definition of life? For me, life is a pattern. It is a pattern of molecules in space. It is a pattern of processes. The atoms in you today are not the same as those next week. Are those atoms "alive" today and "dead" next week? Why?

  137. did you read correctly? by xenn · · Score: 0

    what I think he was trying to say is that he met someone in highschool that literally believed that the earth was created 4,000 BC (around 6,000 years ago).

    SO, what are you saying? That millions upon millions of Americans believe the earth to be around 6,000 years old?

    1. Re:did you read correctly? by jericho4.0 · · Score: 1

      According to this Gallup poll, it's well over a hundred million of them.

      --
      "A language that doesn't affect the way you think about programming, is not worth knowing" - Alan Perlis
  138. wrong by circletimessquare · · Score: 1

    oil micelles in water spontaneously create themselves

    if there were any self-replicating rna/ dna, they would have been exposed to all sorts of disruptions

    any that got trapped in an oil micelle would be in a controlled environment, and would have been exposed to less interruptions, and would replicate more

    over time, types of self-replicating molecules dependent on the existence of oil micelles would have evolved, and, over a long time, any that could extend the existence of the micelle, or control its shape/ size would have evolved (it created byproduct molecules that interact with the micelle)

    eventually, the ability to control the micelle's formation and to create new ones would have established a huge evolutionary leap, and survival guarantee, and such creatures would come to dominate

    its a gradual process, where there are rewards for every tiny incremental improvement

    just like the evolution of flight: it didn't happen because lizards kpet jumping off cliffs util one spontaneously had mutated wings in all their complexity

    more like lizards jumped from tree to tree, and those with webbing could jump a little more, glide a little more, and the survival benefits of this concentrated... better and better aeronautical abilities until full flight was achieved

    gradually, in tiny incremental steps, where each tiny improvement meant a survival advantage

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
  139. Personally I reject quantum chromodynamics by Ayanami+Rei · · Score: 1

    I think the red, green and blue stuff is malarky.
    I say it's cyan, magenta and yellow!

    --
    THIS THING CAN TURN ON A DIME, MACROSSZERO STYLE ALSO FUCK BETA, ~NYORON
  140. "inchoate"?!? by porkchop_d_clown · · Score: 1

    huh? I've heard lot's of words used to describe a supreme being, but "inchoate" !?!

    Which religion defines the creator of the universe as a rudimentary being who isn't fully formed? What person has a deep seated psychological need for an inadequate supreme being?

    1. Re:"inchoate"?!? by rburgess3 · · Score: 1

      The Greek and Norse Mythos', for a couple of examples. Basically any polytheistic mythos who's gods are exaggerations of human traits could be described as 'inadequate' when comparing to more modern belief systems.

      One can put a lot of the 'fun' back in fundamentalism by educating them on the evolution of religious belief systems.

      In defense of the OP, they were most definitely using definition two of inchoate:

      Imperfectly formed or developed: a vague, inchoate idea.

      Most modern conceptions of 'God' have several glaring problems, the most famous being the paradoxes invited by their absolute attributes like omnipotence and omnibenevolence - Can an omnipotent being do something he cannot do? or Can an omnibenevolent being actually allow evil to exist? You'll get a lot of wishy-washyness from theologians about those, they've had thousands of years to come up with good answers and haven't yet. They like to side-track you with discussions about 'what's the point?' and 'God's essence is such that these things do not occur'. Wikipedia featured just this issue on the front page on the 9th of January.

  141. I also have to ask - "is this news"? by porkchop_d_clown · · Score: 1

    Which biologists haven't been thinking of viruses as the logical step between non-life and life?

  142. Viruses first seems obvious by Stephen+Samuel · · Score: 1
    Viruses are much simpler than bacteria. Unless you go with intelligent design, I find it hard to see how you could get bacteria without the 'bare' DNA coming into existence first -- and then ultimately mutating into the more complex bacterium.

    I agree with the scientist who noted that bare viri would be rather unstable compared to bacterium -- but that would explain why self-replicating viri are essentially extinct today -- they've been beaten out by bacterium, and forced into a parasitic niche.

    The really novel thought for me is that cell nuclei may have evolved from a large virus 'melding' with a bacterium.
    This would mean that we, like lichen, are a hybred creature -- half bacterium colony, half virus.

    And the "intelligent design' people complain about being descendents of the apes .... bwahahaha! we're a walking, talking viral colonoy!

    --
    Free Software: Like love, it grows best when given away.
  143. Some time in the future... by St0rmwarden · · Score: 1

    ... Will a super-intelligent AI look back and be depressed to discover that it's ancestors included SoBig and Blaster?

  144. yes it is a shame by circletimessquare · · Score: 1

    that you have asperger's syndrome

    and that your brain is so brittle that you can't focus on deeper meanings, and get stuck on shallow style

    i wish you luck on your impediment

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
  145. well said by circletimessquare · · Score: 1

    said better than me at least

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
  146. thank you for the info by circletimessquare · · Score: 1

    nt

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
  147. Where's the Intelligent Design? by gillbates · · Score: 1

    From the article:

    We have been looking for our designer in all the wrong places. It seems we owe our existence to viruses, the least of semiliving forms, and about the only thing they have in common with any sort of theological prime mover is their omnipresence and invisibility....

    And, of course, their intelligent design. Few things in the biological world accomplish so much with so little complexity as a virus. Relatively speaking, they are lean and mean, optimized for their particular function. Think of them as the hand-optimized assembly code of the biological world.

    I'm growing weary of psuedo-intellectuals spouting off politically correct claptrap without any regard for critical thought whatsoever. There was nothing in the article which disproved, or even significantly weakened the case for intelligent design. In fact, the key claim of Intelligent Design - that a statistically random organization of DNA sequences would not produce a viable organism isn't even discussed. If anything, the presence of viruses in the evolutionary chain would only reinforce this claim, because 1.) their DNA sequences are much more crucial to their survival than in other types of organisms, and 2.) they are not a viable organism apart from their host.

    Granted, I don't like the ID argument because of its statistical basis, but this latest research does nothing to disprove intelligent design or theories of a benevolent Creator. Perhaps if the author had really thought about this critically he would have realized that as exciting as this discovery is, it does nothing to weaken the ID argument. It is science, not theology!

    This was a scientific, not theological discovery. Why does the author confuse the two?

    --
    The society for a thought-free internet welcomes you.
  148. Actually religion has some use for certain people! by Anonymous Coward · · Score: 0

    It is the drug of the poor. If you can convinced the poor (in mind and/or matter) that there
    will be an after life then you can also convince them to leave you all the power and money.
    The after life will be a lot of fun if the current life is very bad. The more you suffer
    the happier you will be after death.

    A religion is a must for any tyran who wants to control his people. When there is a conflict
    between the tyran and religion is when the tyran doesn't control the religion.

    Perhaps this is why people in the USA have felt like they were free for many years, because
    of the separation of church and states. If assholes like bush or robertson ever get their
    way we'll live in a theocracy no better than Iran or Saudi Arabia. You will get killed
    with stone or burned perhaps instead of having your head cut off.

    Life for the normal people would be just as miserable.

  149. 1.4 Billion Muslims would like to disagree. by Anonymous Coward · · Score: 0

    i am sure they believe in Creationism. and i am also sure they are outside of the US... just because Christians in this country have been quiet, and allowed themselves to be marginalized (mostly because they actually may believe in freedom of speech) they have only been pushing back hard lately... be glad they don't push as hard as say a suicide bomber (usually).

    1. Re:1.4 Billion Muslims would like to disagree. by Anonymous Coward · · Score: 0

      So we got it wrong? God is a Muslim?

    2. Re:1.4 Billion Muslims would like to disagree. by Anonymous Coward · · Score: 0

      Parent was referring to the discussion of creationism, saying that it was only being discussed in the US. i was making the point that many people who believe religion X (i used muslim 1.4 billion strong and it is only the 2nd largest religion in the world)add in christianity with an estimated 2.1 billion followers you are talking about more than half the world population believing in some form of creationism/god designed world... starting to feel outnumbered yet ? back to the point, like i said the discussion is going on by more than just a few "kooks" in the US. the kooks are spread far and wide, and far outnumber the scientists and others that believe in straight evolution. this is all coming from an athiest who just happens to see things from BOTH sides unlike some others who call religious people names. just remember, this freedom to say that evolution is real came from founding fathers who were largely god fearing men. need more people like them that could straddle the line and see things from both sides.

  150. Agent Smith Was Right! by Master+of+Transhuman · · Score: 1

    Humans are a virus.

    --
    Richard Steven Hack - This sig is TOO GODDAMN SHORT TO DO ANYTHING USEFUL WITH! MORONS!
  151. the giraffe by circletimessquare · · Score: 1

    has a neck length like no other

    it is like that because of feedback with the environment: giraffe's with longer and longer necks survived and had more and more offspring

    the amplification of the neck required nothing more than the fact that: longer neck= more food, the longest of the long always had the fullest belly

    same with human intelligence: the smarter of the smartest always had the fullest belly

    this amplification of traits is actually quite common throughout species and evolutionary history. the amplification of certain traits due to sexual selection is a prime example: peacock's tails and deer's antlers among thousands of other such examples

    you really should educate yourself on the subject matter you speak of before you open your mouth

    otherwise, you run the risk of sounding ignorant

    like you do now

    How many more ideas are they going to go through?

    many many more. each one tries best to match the evidence set before it. the main reason intelligent design will never defeat evolution is simply because intelligent design is like this: "this is the way it works, accept it, shut up, don't think about it anymore, end of story." this is dogma. it is not science. science always defeats dogma because dogma ends thought, while science is always welcome to more and better thought. so science grows and gets stronger and stronge rover time while dogma sits and rots. evolution works like this: "we will try to get the idea that makes the most sense with the evidence set before us, and as more evidence or better ideas present themselves, we will incorporate them until we have an explanation which is the best explanation of what we see in the natural world." with every passing day, evolution gets stronger and a better description of the world around us, while intelligent design looks more and more full of holes

    If evolution is real I have to wonder why one branch of the tree became so different compared to the other branches (humans to any other species). There should be a lot more similar variations of humans but there is only 1 type of human at that. There is a big divide between humans and any other species.

    there have been more than one type of human: homo sapiens killed them all off. witness the hobbits of indonesia and the neanderthals of europe. there even were some sort of gigantic type of human in africa i recently heard about. the reason you can't fathom these other things you talk about is because you can't wrap your mind around the immensity, the sheer volume of time we are talking about. we get to where we are with the branches of life and the big differences of species (pruning the branches continualy over time) simply because we are talking about such a FUCKING HUMONGOUS amount of time

    you're just too much a simpleton and a dimwit to appreciate it

    educate yourself first, then open your mouth next time

    --
    intellectual property law is philosophically incoherent. it is your moral duty to ignore it or sabotage it
  152. life is mearly a racetrack for electrons. by lazy+genes · · Score: 0

    That is all.

  153. What this means is genesis by CarpetShark · · Score: 1

    That's always possible. Even a random memory malfunction (ie, a random mutation) could lead to intelligent computers, given programs that were close enough already. As time goes on there will be more computers, and more artificially intelligent software, so the "breeding ground" for these mututations, and therefore the chances of it happening successfully, will increase.

    But actually, it means something cooler than that... if viruses can cause evolution beyond single-celled organisms, then beginning the process of intelligent life on other planets is just a matter of sending a virus there. It's a slow approach, of course... ;)

  154. Re:beleive what you want... by Pooua · · Score: 1
    in a junkyard the size of the universe, with a tornado the size of billions of galaxies, and it blew the materials around in such a way that they could only create structure and build off of their own structure, over the course of billions of years, i really think it would be impossible if many "Boeing 747s" weren't formed together.

    Very amusing; so, you believe there are some 747s floating around somewhere else in the Universe, all formed by chance?

    Evolutionists and mathemeticians have been at odds (pardon the pun) with each other for many years. Evolutionists know that anything is possible given enough time and particles, whereas mathemeticians know there aren't enough particles or time in the entire Universe for all the things evolutionists claim. And, you, my friend, have completely lost the sense of scale in probability, beyond which events may effectively be said to be impossible. Something that has a 1 in a google chance of happening can effectively be considered impossible; the last stars in our Universe will burn out before it happens.

    --
    Taking stuff apart since 1969 (TM)
  155. OT by onco_p53 · · Score: 1

    Off topic, but it fascinates me how many molecular biologists / microbiologists are on slashdot (myself included).

    1. Re:OT by smellsofbikes · · Score: 1

      It amazes me how many serious experts in almost any technical discipline are here. Some of the astrophysics and theoretical math threads have made me feel like I'm about two inches high -- and with eight years of biochem and microbiology, I still often feel completely clueless when people with PhD's are going on about minutae I've never even heard of. This place is teeming with experts.

      --
      Nostalgia's not what it used to be.
  156. Re:beleive what you want... by i8puppies · · Score: 0

    Uhhhh
    Did you not see the quotes I put around Boeing 747?

    Did you not even stop, for a moment, to think that I metaphorically meant "intelligent life"?

  157. Re:beleive what you want... by i8puppies · · Score: 0

    And in terms of being off-scale, please re-read my initial criticism of parent post. Tornado + Junkyard != Something as large as a 747. I completely agree that a tornado in a junkyard cant make a 747, which is what the statement is supposed to do, make you think it's impossible because its a biased and innaccurate analogy. Maybe a tornado in a junkyard could make something _smaller_ (assuming the range of acceptable "things" were things we are already familiar with). The statement assumes that a strong wind could assemble an airplane out of washing machines, broken tv's, rocking chairs, and a toaster. No wonder it's so easy to not believe. "Believing in gravity is like believing birds cant fly!" So let me re-iterate and spell it out for you, with a "junkyard" the size of the universe, "junk" meaning an unimaginable amount of particles, "tornados" being natural forces not chaotic enough to destroy said particles if they were to happen to assemble by chance, and "boeing 747" meaning intelligent life. Then yeah, what is so impossible about something nice happening given enough time? Much more believable than "Oh. Yeah. Some invisible grandfather-figure guy, who has no creator, who is very involved in human affairs, made you from nothing."

  158. Re:beleive what you want... by Bastard+of+Subhumani · · Score: 0
    The existence of this behaviour on Earth does not in any way exclude the existence of a supreme being as a creator.
    But then neither does ... well, anything, actually. But then the existence of supernatural beings is not a falsifiable claim, so it doesn't belong in science.
    --
    Only three things are certain; death, taxes, and apocryphal quotations - Ben Franklin.
  159. True by Opportunist · · Score: 1

    I am in Europe. When I heard there's a "discussion" going on about creationism or intelligent design or other rubbish, my first thought was "(snicker) They won't budge to reality, will they?" Little did I know, or at least assume or even consider, that in the US this discussion is very real.

    At first I thought it's a fad. You know, like that low carb thing. Some nutjobs trying to create a tempest in a teapot to be heard. A marketing stunt for a church, so to speak. That this could honestly be considered teaching material, I don't think anyone here would have considered this possible.

    If a state funded school tried to push this bullspit into courses, they would probably be struck from the funding list. Worst, certificates from said schools would no longer be accepted as valid. Simply for teaching bullcrap. And trying to push this matter into politics would be suicide for the career of the pushing politician.

    We've had our time of clerical oppression. Maybe the US need some of that time, too, before they realize that it's not really a good idea and that (organized) religion is the best way to keep a country backwards and out of the scientific loop.

    --
    We used to have a Bill of Rights. Now, with the rights gone, all we have left is the bill.
  160. Re: Miller's Experiment -- is inconclusive by Anonymous Coward · · Score: 0
    (In advance I am acknowledging that Been a long time since Biochem and I don't remember all of the specifics)

    If I recall correctly, Miller's Experiment and it's variants have only been able to create amino acids and precursor chemicals, not any form of "life", and then under very carefully constructed conditions "surmised" to have existed at some point on earth. Even these experiments required intelligence to design, so in a way, even if scientists eventually cracked the code of creating the simples one celled organism, it took an "intelligent being" to design the experimental conditions required. Which instead of defeating the idea of an intelligent designer for life supports it.

    But to my main point there is a chicken and the egg problem that would have to be solved for these amino acids to begin assembling the amino acids into the self-replicating protein chains required, and even prior to that it seems like their was a problem where polymerization is required but the formation of some of the acids prevents it (?) I am not saying there wasn't a primordial soup by the way -- the fossil record shows there was. What I am saying is that it doesn't make sense to insist that the process of intelligent creation would not be supported logically AND in the fossil records, where random design would tend NOT to be logical or supported in the fossil records.

  161. Good that you ask by leehwtsohg · · Score: 2, Informative

    What is referred to as "the theory of evolution" consists of several parts. First of all, common descent - i.e. that the different species that live on earth (or lived on earth in the past) have common ancestors. They did not appear independently, but instead descended and changed from that common ancestor. The theory does not specify if there was just one common ancestor, or several ancestors (i.e. that life might have originated several times). Currently evidence points at one common ancestor, with no good understanding of where to put viruses.
    This theory had already many opportunities for being disproved. For example, if it had turned out that the DNA of one species has no resemblence to very close species - so for example, if the DNA of a marsupial rat was closer to that of a regular rat then it is to a kangaroo. Or if the genetic code of species would be a patchwork of pieces assembled from other species, taken almost without change, and not according to a pattern of common descent. It is amazing that the DNA, totally unknown at the time of Darwin, shows almost exactly the same pattern of descent as can be inferred by looking carefully at the animals - i.e from taxonomy - even when one looks at parts of DNA that seem to have no function.
    Fossil evidence provides another opportunity for the theory of common descent to be chalenged: if we discovered a bird in 2 billion year old rocks, it would be a serious problem for the theory of common descent.

    Another part of the theory of evolution is how changes from one species to another happen. The idea of evolution by natural selection and random changes. Part of that theory is a mathematical theory, and can not be disproven. Just like you can not disprove that 7 is a prime number - if you accept certain axioms, then it follows from them. What is disprovable is whether the theory applies to the world - to the way species changed in the past. That, again can be disproved. Darwin provided one example - he said that if one would find even a single instance in which a feature of one species evolved for the sole benefit of anoter species, then his theory would be proven wrong. Thus, artificially selected species have many features that are only good for humans - increased fat content, wiered shapes and so on, which make the species they are in much less viable. If you found something like that in species that were supposed to have been naturally selected, it again would provide a serious chalange to the theory of evolution.
    Another possible way of disproving the theory is if you found within the DNA of humans a single gene of a length of say 1000 bases (letters) (out of the 10^9 that we have) that does not appear to be similar to a sequence in any organism on earth. (Though it would be already an increadible challange if it did not appear in any closely related ape).
    Or imagine the following experiment: take bacteria, and delete the gene for digesting a certain sugar. Grow them with that sugar for some time. If the gene suddenly appeared back, it would be a serious challenge to the idea that things change through random mutations.

    Hey - that was almost on topic!

  162. trolling trolling trolling by Anonymous Coward · · Score: 0

    Why is it so difficult for you to use punctuation beyond the occasional comma? Reading your posts is quite the task.

  163. Makes sense... by sowalsky · · Score: 1

    Considering that the most potent viruses are "RNA viruses" and that biology students are taught that "the RNA universe" preceeded the "the DNA universe" (basically meaning that on Earth, organisms used RNA before DNA evolved) then the theory that viruses promoted evolution (possibly as a way to combat the "RNA universe") holds water.

  164. Simple... by The+Creator · · Score: 1

    Since chickens evolved from organisms that had eggs, then eggs must have come first.

    --

    FRA: STFU GTFO
  165. Did these guys go to college. by supersnail · · Score: 1

    Viruses are parasitical organisms which use the RNA mechanism in the cells of "real" life forms to reproduce thier DNA.

    Viruses have no cell structure, therfore no cell nucleus, therefore no RNA and therefore cannot reproduce on there own.

    So how can a parasitic virus which depends on celled organisms to reproduce be the ancestor of celled organisms.

    --
    Old COBOL programmers never die. They just code in C.
  166. inchoate being? by Anonymous Coward · · Score: 0

    inchoate
              adj : only partly in existence; imperfectly formed; "incipient
                          civil disorder"; "an incipient tumor"; "a vague
                          inchoate idea" [syn: incipient]

    I can't even understand what kind of belief system Zonk is talking about. It's definitely not Christianity, nor is it creationism.

    Perhaps he's talking about that Que character from Star Trek TNG?

  167. god by jumparound · · Score: 1

    This proves it... god IS a 1337-h4xx0r

  168. Some links by Anonymous Coward · · Score: 0
    At first, I thought of it as another misrepresentation by popular science media. Then I read this:

    Wikipedia article: much shorter, much more informative

    One of the recent papers in Science on that matter: quite nicely written for a junk that both Science and Nature are becoming.

    In particular, the latter states:

    The most unexpected is the presence of numerous genes encoding central protein-translation components, including four amino-acyl transfer RNA synthetases, peptide release factor 1, translation elongation factor EF-TU, and translation initiation factor 1.


    The question is, whether the bold stuff works? It seems to me that it is all debris of old working cell-replication machinerie.

    My humble hypothesis is that it is downgrade from bacteria.

    Sorry for being an Anonimous Coward
  169. Sorry, facts wrong, logic wrong! by SlippyToad · · Score: 2, Insightful
    Evolution has never been duplicated in a lab

    By what criteria would you like to have it demonstrated? If you mean the large-scale evolution of microbes into mammals, I'm afraid then that there's no lab with enough time or funding to create life from scratch, given that we think it takes about 2 billion years under the most ideal conditions we know of for it to happen. The condition you are requiring for "proof" is ridiculous. I might say also that you have to create the Sun in a lab to demonstrate that fusion occurs -- but I could just invite you to a vacation on the Bikini Atoll for a smaller demonstration.

    Adaptation of moths or bacteria to environmental stress is not evolution.

    So, faced with an example of small-scale evolution clearly occurring, you dance to one side and and re-define the process in order to avoid accepting the unmistakable truth -- organisms change their forms in response to selective pressures from their environment. Good one! Nice to see that evidence doesn't really mean anything to you.

    The origin of life itself cannot be shown experimentally. Nobody has ever taken any mixture of all 92 elements, none of which have ever been part of something alive, and created any life . . .

    blah, blah, blah. Again you come up with the clearly-impossible requirements of proof, as you bloody well know we do not yet have the knowledge to reproduce biogenesis. Not knowing exactly how to make it happen doesn't mean the theory is invalid. And by attacking biogenisis you are also not really attacking evolution. You're instead moving goalposts far and wide to avoid the squarely-kicked points that you don't want to see.

    Evolution tries to apply to living systems what applies nowhere else -- namely that systems left to themselves become more complex, rather than breaking down into simpler components.

    Fundamental and bloody ignorant misunderstanding of the 2nd Law of Thermodynamics. Try to grasp the complete implication -- left to themselves any systems of order will tend towards disorder. Our system is not left to itself, idiot! We have a gigantic ball of flaming light pouring energy into the system, which can directly be proven to drive evolution's movement. We even know how chlorophyll works in plants to make photosynthesis possible.

    Evolution teaches that over large spans of time, simple cells evolved into complex animals -- even eventually humans. No experiment has ever been done to prove even the smallest link in such an amazing chain of events.

    Again with the impossible requirements. What we do have is a long chain of irrefutable evidence from which the devoutly stupid avert their eyes in fear. An experiment is what science uses when the real world's evidence isn't specific enough or obtainable. You once again wildly shift goalposts across the field, because if you didn't you'd be confronted with a TEEMING MASS of indisputable evidence that didn't need to be experimentally obtained.

    Evolutionists try to convince us and themselves, that complex living structures, such as brains, eyes, ears, circulatory systems all came into being without detailed instructions and knowledge of how put them all together. Hemoglobin molecules are very complex structures that have a very precise arrangements of atoms.

    Funny, during the latest trial on ID, "Dr." Behe was unable to convince a jury of the theoretical underpinnings of this, and whenever confronted with any questions about it ID'ers are eerily silent on the details of at what juncture this complexity becomes irreducible. Do you have any math to back this up? That's usually what real scientists use to frame their quantitative proofs. What is the measure of complexity as expressed by a number, and at what "percent" or vector or whatever of complexity does a system become too complex to have evolved independently of intelligence? As an aside, any theoretical papers on this topic whatsoever would be o

    --
    One day I feel I'm ahead of the wheel / the next it's rolling over me / I can get back on / I can get back on
    1. Re:Sorry, facts wrong, logic wrong! by arminw · · Score: 1

      ......By what criteria would you like to have it demonstrated? If you mean the large-scale evolution of microbes into mammals....

      Take any collection of cells you wish and make a self-sustaining multi-cellular organism. A dozen or so cells will be good enough for a demo, even though real organisms have millions of cells organized into complex structures. Whenever evolutionists are asked to show by EXPERIMENT that their theory is real science they always come out with the old worn out excuse of time. Immense periods of time are needed. In every science, except the philosophy of evolution, time is always the enemy of organization. Whether manmade or natural, complex systems break down into simpler ones. This is demonstrated to you in all areas of life. You and your new car are both subject to wearing out. Once the you die, the genetic codes, the information therein combined with an energy supply cease to operate and your body breaks down into the basic elements.

      -----So, faced with an example of small-scale evolution clearly occurring------

      Living things are very adaptable and in that sense, "survival of the fittest" is certainly valid. However, the urge to survive by adapting to stress in no way proves the claim of evolution from the simple to the complex. Natural selection is NOT a process that explains or even attempts to explain how a single celled creature became say an elephant. It simply states that within a grouping of organisms, the ones that adapt best to environmental stresses are the ones in that group that tend to reproduce that group.

      -----Not knowing exactly how to make it happen doesn't mean the theory is invalid.----

      You state that evolution is fact, yet say that not knowing still makes a valid theory! Facts are things we know. You name me ONE other real science that is NOT based on doing experiments and measurements in the lab other than the pseudo-science of evolution. The principles of thermonuclear fusion have been awesomely demonstrated at the Bikini Atoll and billions are being spent to harness this energy in a reactor.

      ------We have a gigantic ball of flaming light pouring energy into the system, which can directly be proven to drive evolution's movement.-----

      It is you that has no understanding of entropy. Here is a quote from the relevant section of WIKI. Look the whole article up. Pay special attention to the "arrow of time" part.

      A quote from the WIKI article: "Unlike most other laws of physics, the Second Law of Thermodynamics is statistical in nature, and its reliability arises from the huge number of particles present in macroscopic systems. It is not impossible, in principle, for all 10^23 atoms in a gas to spontaneously migrate to one half of container; it is only fantastically unlikely -- so unlikely that no macroscopic violation of the Second Law has ever been observed."

      Evolution of simple life forms into complex ones has also never been observed, and although not impossible, it is just as unlikely as the atoms all migrating to only one part of a container. If you have two such containers connected with a pipe, the pressure in both of them will be equal. If you replace the pipe with an intelligently designed power-driven pump, you can get all or most of the atoms into one container only. If you supply energy only, such as heating the pipe or the container(s), there will be be an equal increase of pressure in both containers. Only the DESIGNED pump, supplying energy does the job. Simply put, the sun supplies the energy for all life, but there is also INFORMATION or knowledge needed how and where to apply that energy.

      Information is a product of mind and evolution denies that there is a mind behind the complexity of life. A computer without a program is a door stop. Programs only arise in minds.

      -----That life evolved from simpler forms to more complex forms isn't so much a theory as an observed fact.-----

      This process has neither been observed happening today in nature, nor has anybody MADE it happen

      --
      All theory is gray
    2. Re:Sorry, facts wrong, logic wrong! by turnipsatemybaby · · Score: 1

      Do you know what a strawman argument is? You are changing the very concepts of how evolution functions just so you have an argument you can knock down.

      Evolution has huge amounts of evidence behind it, a huge chunk of in in the form of short-time scale real world experiments.

      Perfect example: Bacteria becoming resistant to medications? If you don't think that that is evolution, you're an unqualified idiot, and it's a waste of time arguing with you further because you're not actually interested in knowledge. You just want to push believes that someone told you from a pretty building you visit once a week.

    3. Re:Sorry, facts wrong, logic wrong! by arminw · · Score: 1

      ....Perfect example: Bacteria becoming resistant to medications? If you don't think that that is evolution....

      That is adaptation, "survival of the fittest", but in no way proves that is the mechanism by which you get from a single cell to a complex creature such as my cat. Living things are PROGRAMMED to survive and propagate their genes.

      Name me just ONE experiment that shows how a single cell organism "evolves" into a complex multi cell creature.

      --
      All theory is gray
    4. Re:Sorry, facts wrong, logic wrong! by Copid · · Score: 1
      It is you that has no understanding of entropy. Here is a quote from the relevant section of WIKI. Look the whole article up. Pay special attention to the "arrow of time" part. A quote from the WIKI article: "Unlike most other laws of physics, the Second Law of Thermodynamics is statistical in nature, and its reliability arises from the huge number of particles present in macroscopic systems. It is not impossible, in principle, for all 10^23 atoms in a gas to spontaneously migrate to one half of container; it is only fantastically unlikely -- so unlikely that no macroscopic violation of the Second Law has ever been observed."
      So, given your understanding of how the 2nd Law applies to evolution, how does the 2nd Law NOT apply to the assembly of a child from a unicellular structure by simply adding food, water, and energy. The 2nd Law is an inherently mathematical law, so hopefully you can produce some numbers, or at least, equations.

      Evolution of simple life forms into complex ones has also never been observed, and although not impossible, it is just as unlikely as the atoms all migrating to only one part of a container.
      You're ignoring something here: Life brings with it complex chemical reactions that assemble complex stuff all the time. All you need to do is input energy and matter and, under the right conditions, watch complicated structures arise. It's happening all the time. I think that, like the typical creationist argument, yours takes a very precise mathematical idea and applies it in a hand-wavy philosophical way. That's not at all how these things work.

      If you have two such containers connected with a pipe, the pressure in both of them will be equal. If you replace the pipe with an intelligently designed power-driven pump, you can get all or most of the atoms into one container only. If you supply energy only, such as heating the pipe or the container(s), there will be be an equal increase of pressure in both containers. Only the DESIGNED pump, supplying energy does the job. Simply put, the sun supplies the energy for all life, but there is also INFORMATION or knowledge needed how and where to apply that energy.
      Well, we have power-driven pretty much taken care of. We have energy a-plenty flowing all over the place, so a surprising number of chemical reactions can take place. The contraction and expansion of your muscles is a good example. Of course, your argument would dismiss the example by presuming your consequent: the muscles were intelligently designed.

      Information is a product of mind and evolution denies that there is a mind behind the complexity of life. A computer without a program is a door stop. Programs only arise in minds.
      I find it fascinating that people drag in information theory and thermodynamics to lend credibility to their "scientific" arguments and then use ill-defined terms and ignore the mathematics of the theories they invoke in favor of arguments that are no less philosophical than "first mover" and other nonsense. What is your definition of information? How are you measuring it, and why do you say that it's a product of mind?
      --
      An interesting anagram of "BANACH TARSKI" is "BANACH TARSKI BANACH TARSKI"
    5. Re:Sorry, facts wrong, logic wrong! by arminw · · Score: 1

      ....how does the 2nd Law NOT apply to the assembly of a child from a unicellular structure by simply adding food, water, and energy.....

      The second law says that everything goes from order to disorder, from complexity to simplicity. It requires energy and the information or programming to counteract this tendency. Lack of order equates to lack of information needed to create the order to counter the law of entropy. You cannot get around the fact that entropy and information are inversely related.

      The code stored in the DNA molecules is the INFORMATION or program that directs the food and energy to accomplish the end goal of reproduction. You can think of the physical cell as the computer hardware, the food as the energy source to run the circuits and the code in the DNA as the program. All programs are products of thought arising in a mind, both for manmade computers and the programs in the DNA. Having the computer hardware and plugging the computer in the outlet is not enough. There has to be the program that directs the purpose of the computer. Food and water by themselves also are insufficient. The program that exactly tells how to utilize this food and water MUST also be present. There is no way around that fact.

      The the structure of the muscles themselves and chemical reactions that allow then to operate upon command from the nervous system are all precisely programmed in the codes of the DNA.

      Since neither evolution not ID can prove by experiment where that information or programming originated, they are not true science. Evolutionists delude themselves and others by asserting that their belief qualifies as science. People choose to BELIEVE one or the other, but neither can be proved. Once asserts that there is a programmer of life and the other denies there is.

        For this reason, both should be taught on equal footing in philosophy or religion classes, but not as science. Neither so called creation science nor evolution are science, but beliefs. You can choose and cling to your beliefs and I can have mine.

      --
      All theory is gray
    6. Re:Sorry, facts wrong, logic wrong! by Anonymous Coward · · Score: 0

      some macromolecules are more stable than others.. If one of these stable molecules were to by random chance have the quality of attracting (due to electrical charge)the smaller molecules to form a mirror image of itself, it will.. after all the materials it is made out of must have been present in the surroundings to begin with. Then if by chance the addition of one final part splits this macromolecule in two, we are ready to start anew. Once this happens once, this macromolecule is more likely to form again. Once it forms twice it is even more likely to form a third time and so on parabolically. In this way one certain molecule becomes more predominant than another. Then by random substitutions due to simialar structures this molecule changes a little. If the new moleucle more easliy forms a mirror image than the last, or is better insulatedf rom its surroundings( binds to the inside of a oil bubble for example) it will be more likely to form than the previous molecule. Eventually the most common macromolecules are so complex that thier sucess starts depending on the timing of the bonds. This leads to only those molecules that can electrically attract thier own microenvironment "reproducing" and so on.

    7. Re:Sorry, facts wrong, logic wrong! by Copid · · Score: 1

      The second law says that everything goes from order to disorder, from complexity to simplicity. It requires energy and the information or programming to counteract this tendency. Lack of order equates to lack of information needed to create the order to counter the law of entropy. You cannot get around the fact that entropy and information are inversely related.

      No, that's not what the second law says. That's the "voodoo thermodynamics" that creationists who have never taken a proper physics class like to apply. You're ignoring the very important fact that local decreases in entropy can be gained by increasing entropy in other areas. Thermodynamics is the study of heat flow, and there is more than ample heat flow in and out of our planet and all over the place to allow all sorts of crazy reactions to take place. Stop learning about entropy from hand wavers with an agenda. It is a mathematical subject that can't be addressed rigorously with metaphors.

      The code stored in the DNA molecules is the INFORMATION or program that directs the food and energy to accomplish the end goal of reproduction. You can think of the physical cell as the computer hardware, the food as the energy source to run the circuits and the code in the DNA as the program. All programs are products of thought arising in a mind, both for manmade computers and the programs in the DNA. Having the computer hardware and plugging the computer in the outlet is not enough. There has to be the program that directs the purpose of the computer. Food and water by themselves also are insufficient. The program that exactly tells how to utilize this food and water MUST also be present. There is no way around that fact.

      The the structure of the muscles themselves and chemical reactions that allow then to operate upon command from the nervous system are all precisely programmed in the codes of the DNA.

      Argh! More tortured analogies! What I asked for was an actual argument that applies entropy (heat flow / absolute temperature) to an actual maethmatical argument with the actual 2nd law. Let me give you a hand: 1) Define entropy and how it applies to this situation. 2) Show how we can estimate the amount of entropy in the system. 3) Show that evolution decreases this amount of entropy without the requisite heat exchange, while the growth of a child does not. What's the mathematical and physical difference? You seem to have a philosophical idea, but you can't apply it rigorously to what is really a rigorous framework.

      I'm all ears. There are a lot of physicists who would be very interested in seeing you turn their worldview on its ear. Philosophical hand waving is not going to do it, though. You should either make a REAL thermodynamic argument or stop wrapping yourself in a protective blanket of scientific and mathematical rigor when all you have is analogies and poorly defined terms.

      Since neither evolution not ID can prove by experiment where that information or programming originated, they are not true science. Evolutionists delude themselves and others by asserting that their belief qualifies as science. People choose to BELIEVE one or the other, but neither can be proved. Once asserts that there is a programmer of life and the other denies there is.

      OK, I think you're applying your private version of "information theory" to the actual origin of DNA. It should be clear from observation that the complexity of DNA strands can increase through purely natural mechanisms. It is, after all, an imperfect replacating molecule. You seem to be concerned less with the transformations that DNA has undergone over millions of years than you are with the origins of DNA itself. Well, there's work being done, but that's really not what evolution is about. It's about how we came to have the diversity of life that we have today, regardless of where the original life came from.

      For this reason, both should be taught

      --
      An interesting anagram of "BANACH TARSKI" is "BANACH TARSKI BANACH TARSKI"
    8. Re:Sorry, facts wrong, logic wrong! by arminw · · Score: 1

      ....That's the "voodoo thermodynamics" that creationists who have never taken a proper physics class like to apply.....

      The principle of entropy has far wider applicability than only thermodynamics. Look it up on WIKI under second law of thermodynamics.

      A quote from the WIKI article: "Unlike most other laws of physics, the Second Law of Thermodynamics is statistical in nature, and its reliability arises from the huge number of particles present in macroscopic systems. It is not impossible, in principle, for all 10^23 atoms in a gas to spontaneously migrate to one half of container; it is only fantastically unlikely -- so unlikely that no macroscopic violation of the Second Law has ever been observed."

      Evolution of simple life forms into complex ones has also never been observed, although not impossible. It is just as unlikely as the atoms all migrating to only one part of a container.

      If you have two such containers connected with a pipe, the pressure in both of them will be equal. If you can do an experiment by which you are able to move all or, to make it easy, 99% of the gas molecules into only ONE of the containers, you will have reduced the entropy of the system. The constraint to your experiment however is that you are allowed to use energy alone and be dependent on probabilistic procedures. You may NOT employ any kind of pump or mechanism that has a design component.

      If you are hung up with the temperature aspect of the second law you may substitute two copper blocks for the containers and a solid copper rod in place of the pipe. Now you must make one copper block cooler and the other hotter. However, the total thermal energy content of the system may not change, in the same way that the sum total of molecules in the two gas containers never changes. Just one gets hotter, while the other get correspondingly cooler. Again, no designed heat transfer device is permissible. This experiment is harder to do, because whole apparatus must of course be thermally isolated from the environment to prevent heat from "leaking" away which would be equivalent having a hole in one or both of the gas holders.

      If you can do such an experiment, you will have shown that entropy can be reduced by energy input alone.

      You keep dancing around the issue of real science having to prove theories by experiment. No experiment has ever shown complexity arising from simplicity by *any* purely probabilistic, statistical process. That is what must be shown in some way by experiment. DNA stores the information how to construct enzymes and proteins, yet the DNA is made of these. So what came first, the proteins that make the DNA or the DNA that has the instructions to make the proteins of which it is made. Chicken or egg anyone?

      ------Argh! More tortured analogies!-----

      Furthermore, the structure of a computer is avery apt analogy to biological systems, especially humans. All atoms in your body and mine are individually identical. It is only in their precise arrangement as dictated by the software program in the DNA codes that makes us different. In the same way, Windows or Linux and some hackers have also run Mac OSX on the same hardware box. In each case, it is only the software that changes to make them very different. DNA is like a disk and drive that has all the design information on it how to construct them. How then did the first disk drive get made?

      If you find a computer with programs in it, there is no experiment you can do to prove or disprove the existence of a programmer. In the same way, there is no way to prove by experiment the existence or non-existence of the programmer who wrote the codes in the DNA. That is why evolution and ID are BOTH philosophies or beliefs masquerading as science.

      --
      All theory is gray
    9. Re:Sorry, facts wrong, logic wrong! by Copid · · Score: 1
      The principle of entropy has far wider applicability than only thermodynamics. Look it up on WIKI under second law of thermodynamics.
      Yes, it does. That doesn't mean that you can just apply it willy nilly without defining any terms or showing that it actually applies to the situation at hand. That's where you're breaking down.

      Evolution of simple life forms into complex ones has also never been observed, although not impossible. It is just as unlikely as the atoms all migrating to only one part of a container.

      If you have two such containers connected with a pipe, the pressure in both of them will be equal. If you can do an experiment by which you are able to move all or, to make it easy, 99% of the gas molecules into only ONE of the containers, you will have reduced the entropy of the system. The constraint to your experiment however is that you are allowed to use energy alone and be dependent on probabilistic procedures. You may NOT employ any kind of pump or mechanism that has a design component.

      If you are hung up with the temperature aspect of the second law you may substitute two copper blocks for the containers and a solid copper rod in place of the pipe. Now you must make one copper block cooler and the other hotter. However, the total thermal energy content of the system may not change, in the same way that the sum total of molecules in the two gas containers never changes. Just one gets hotter, while the other get correspondingly cooler. Again, no designed heat transfer device is permissible. This experiment is harder to do, because whole apparatus must of course be thermally isolated from the environment to prevent heat from "leaking" away which would be equivalent having a hole in one or both of the gas holders.

      Those experiments are great and all, but you have completely failed to show that they apply to living systems which DO process energy to reduce entropy. That's exactly what they do. All day long. Your argument seems to be: "All things that convert energy to reduce entropy are designed. Life produces localized reductions in entropy by converting energy. Therefore life is designed." Once again, you're presuming the consequent.

      You keep dancing around the issue of real science having to prove theories by experiment. No experiment has ever shown complexity arising from simplicity by *any* purely probabilistic, statistical process. That is what must be shown in some way by experiment. DNA stores the information how to construct enzymes and proteins, yet the DNA is made of these. So what came first, the proteins that make the DNA or the DNA that has the instructions to make the proteins of which it is made. Chicken or egg anyone?
      You're going to have to DEFINE YOUR TERMS if you want an experiment that shows particular results. What is "complexity" and "simplicity" in your argument? Does freezing water into ordered ice crystals count? What about boiling salt water to produce steam and salt crystals (highly localized reduction in entropy by pushing the entropy elsewhere)? Why do I get the feeling that whatever experiment I come up with to point out that you're flat wrong, you'll simply say that the experiment was intelligently designed, thus invalidating it? Seriously, explain what you mean by complexity. Then apply it rigorously to life. Then explain how the energy conversion that life does is not a violation of the 2nd law but evolution somehow is. You really have to draw a thermodynamic distinction between what life does every day and evolution. I'm just not seeing it. Neither are the majority of the world's physicists and biologists, as far as I can tell.

      If you have a problem with the origin of DNA, I can understand that. Nobody is totally sure how it happened. What you're doing, however, is misapplying thermodynamics in a common way, and it's really annoying. Try taking your arguments over to talk.origins. I'd be very interested in what the physicists there have to say. They're usually pretty helpful when it comes to figuring out thermodynamics.

      --
      An interesting anagram of "BANACH TARSKI" is "BANACH TARSKI BANACH TARSKI"
    10. Re:Sorry, facts wrong, logic wrong! by arminw · · Score: 1

      .....Those experiments are great and all, but you have completely failed to show that they apply to living systems which DO process energy to reduce entropy. That's exactly what they do. All day long.....

      When you apply your intelligence to reducing the clutter entropy in your house, you prove that energy alone is not enough. My whole point all along has been that entropy reduction also requires the input of information. DNA is not the information but is merely the information carrier.

      ----What is "complexity" and "simplicity" in your argument?-----

      An example of simplicity is inorganic chemistry based on the combination of two to four elements. If the elements are present under the proper conditions of temperature and pressure the reactions proceed with no regard for the timed order of assembly. The compounds formed have relatively few atoms.

      In contrast, complexity is the time ordered assembly of hundreds or even thousands of atoms into structures which in turn are subassemblies incorporated into systems which have the capability reproducing themselves from the basic elements found in their environment.

      Such complicated assembly processes need to be directed by large amounts of precise information or programs. My quarrel with both the evolutionary and ID/creationist theories is that NONE of them can show by true scientific experiments where this unbelievably huge amount of information originated. We know it is there and it is used in concert with energy and materials to work, for a time, in opposition to the universal principle of entropy. This is evidenced by all life forms.

      You may find a working, complex computer, but just from that alone it is impossible to determine where the software therein came from by *anything* you could possibly do to examine it. You may examine its chips and functions and wonder in awe who may have come up with it, but there are no experiments or procedures whereby you will determine its origin. This is true of the living systems even more so, than of a manmade device like a computer.

      -----If you have a problem with the origin of DNA, I can understand that-----

      I don't have a problem with that at all. The problem I have is that its origin cannot be proven by a scientific experiment and therefore any such explanation is OUTSIDE the realm of science. It matters not whether this explanation is attempted by those in evolutionist, creationist, or intelligent design camps.

      -----Nobody is totally sure how it happened.-----

      There you have exactly summarized what I am trying to tell you. If you are not sure of an assertion someone makes, then you must either BELIEVE it or disbelieve. I happen to believe that there is a programmer, a designer who made it all happen, but there is no proof in the scientific sense that my belief is correct. The converse is also true for those who do NOT believe someone programmed the codes of life. This is why all discussions of origins, being outside the possibility of experimental proofs should not bear the label of and masquerade as science.

      --
      All theory is gray
    11. Re:Sorry, facts wrong, logic wrong! by Copid · · Score: 1
      When you apply your intelligence to reducing the clutter entropy in your house, you prove that energy alone is not enough. My whole point all along has been that entropy reduction also requires the input of information. DNA is not the information but is merely the information carrier.
      You're talking nonsense. What you're talking about is only peripherally related to the physical law you're invoking. Try again: Does boiling salt water to produce salt crystals and steam violate the second law of thermodynamics? Am I adding information anywhere, or am I simply putting energy into a system to create a local state of lower entropy by increasing entropy elsewhere? Time and time again, when the thermodynamics debate gets specific, creationists jump back to these general platitudes that have no basis in the actual physical law. The fact that your arguments are semantically similar to actual thermodynamics does not mean that you're applying the second law of thermodynamics correctly. So what's wrong with the salt water experiment? Does the intelligence of the guy turning on the stove invalidate it?
      --
      An interesting anagram of "BANACH TARSKI" is "BANACH TARSKI BANACH TARSKI"
  170. Confused by Anonymous Coward · · Score: 0

    So is what this article saying is that a more complex "Virus" that could replicate which came from the primordial soup suddenly de-evolved to make simpler viruses and those viruses then inturn evolved into more complex cells. I would also like to know how they know the mimi could at one time replicate itself without a host. That seems like a jump in logic to me with no real supporting evidence except that it makes their theory work.

    I would love some feedback.

  171. Smith/Forterre unrelated by brlewis · · Score: 1

    Agent Smith talked about humans being different from mammals. Forterre is not saying the same thing, because mammals all have cells with nuclei, thus all would be descendents of viruses under this hypothesis.

    1. Re:Smith/Forterre unrelated by roman_mir · · Score: 1

      Thank you, Mr. Obvious. So Agent Smith wasn't 100% correct, all living creatures may have descended from a virus. But maybe humans have in their DNA some virus that is not in other mammal's DNA (just so that you don't feel that you are irrevocably 100% correct either.)

    2. Re:Smith/Forterre unrelated by brlewis · · Score: 1

      I'm saying nothing about Agent Smith's correctness. I'm only saying that Forterre's statement does not support Agent Smith's. This may not be obvious to everyone because both statements connect humans and viruses.

  172. submitter is off topic by Jookey · · Score: 1

    The submitter should be modded down for being off topic. It is like a pastor starting the sermon with. "Todays sermon is going to be about the good sumaritan parable and the lesson of helping others. This is especially improtant today since there is a controversy over whether or not you should convert to bhuddism."

  173. Yes, half is right by SlippyToad · · Score: 1

    Because by his comments the half that knows what the hell it's talking about was apparently never required for his survival. A compelling demonstration of what an amazing machine the human body is that it can manage with only half of the mass of its central nervous system.

    --
    One day I feel I'm ahead of the wheel / the next it's rolling over me / I can get back on / I can get back on
  174. Re:beleive what you want... by Anonymous Coward · · Score: 0

    "whereas mathemeticians know there aren't enough particles or time in the entire Universe for all the things evolutionists claim." Like what? Can you cite any of these mathematicians? Or are you just repeating something you've heard in the past.

  175. de-evolution by peter303 · · Score: 1

    James Gould and other evolution pundits says its a fallacy that evolution has a direction, i.e. get more complex, better, etc. A good fraction of evolution seems to be simplifying life- e.g. leeches and parasites have dropped many bodily organs. Viruses may be simplified cells.

    If evolution has a trend, then it is to occupy more ecological niches over time. About 10% of earth's history ago multi-cellular life came onto land (though bacteria could have been there for eons). Life lives in deep rock, the edge of the atmosphere, has become intelligent, is leaking into space, and so on.

  176. Re: Miller's Experiment -- is inconclusive by micromuncher · · Score: 1

    Apply your genetic algorithms.

    random event-
    -crossover
    -mutation
    if(rank>threshhold) entity persists;
    iterate.

    rank = ability of entity to exist / time

    Where is creative evolution in that?

    --
    /\/\icro/\/\uncher
  177. Re:beleive what you want... by compro01 · · Score: 1

    i think the analogy is off (provided this isn't merely a troll)

    a more apt analogy would be several tornadoes going through a trailer park one after another and eventually assembling something of some level of complexity.

    the way we are occurred by chance. one random change long ago could have resulted in us being far different that we are today, as if that tornado idea assembled a helicopter rather than an airplane for example.

    and no, the "occurred by chance" thing does not eliminate the possibility of there being (a) god(s). something had to start everything. IMO, its entirely likely that he/she/it/whatever simply went "let there be light", "let there be stuff", then just sat back down in his chair and watched things happen.

    --
    upon the advice of my lawyer, i have no sig at this time
  178. Re:feed me to ____(fill in blank with animal) by Anonymous Coward · · Score: 0

    I'm still hoping that in another twenty year, people will ba able to live the fact that someday, they will die, disgusting worms will eat their bowels, a tree will grow out of it, and apples too, circle of life!

    Yeah, but what I'm really hoping for is the day that people accept that as a method of body disposal or funeral. People have asked that question "cremation or burial" in general morbid conversation. I always tell them neither...because cremation is mostly wasting what was me by actually using more energy to burn the body. While burial is locking up what I was made of in some misguided attempt to preserve me.
    Want to really freak people out? Tell them you would prefer to be fed to animals. I really don't give a crap...gators, bears, hyenas, etc. Just let nature be nature. I am not separate from it. The best possible solution would just be burial at sea. Just dump me overboard. Even that is incredibly limited. There also buddhist temples that chop you up and feed you to vultures. Pretty sure you would need to have been there for awhile to get that treatment...
    People look at me like I'm completely insane. I guess they think doing that to a body is disrepectful. How? I am gone. I cannot weep or feel anger. I am not going to haunt you from the afterlife (which I don't believe in anyway) because you did something else. I no longer exist. But if you're going to ponder how to dispose of my now useless vessel...why not consider giving it back? I think I've just accepted what life is and isn't. And what the end of it is and isn't. At least bury me in a shallow grave with some seeds in my pocket or something.

    And no, I am not some dirty hippie. I don't even recycle. :)

  179. Re:beleive what you want... by rp · · Score: 1

    Worlf of Warcraft evolved from similar, more primitive computer games.

    Think about it.

  180. Re: Miller's Experiment -- is inconclusive by Anonymous Coward · · Score: 0
    The problem with the math there is that --at least if I understand it right-- there should be a lot more varied genetic dead ends with MORE instead of less variation AKA more proto- but failed forms instead of mostly successful ones.

    Am I misunderstanding something here?

  181. Re:beleive what you want... by i8puppies · · Score: 0

    What was this creator made out of? Did this creator transend time and space? If so, why did a single event need to start the universe? Is it likely that the universe created itself? As you can see, ID tends to fall away from conventional science and goes straight into the mental-masturbation domain of philosophy and speculation.

  182. STILL wrong. by SlippyToad · · Score: 1
    Take any collection of cells you wish and make a self-sustaining multi-cellular organism. A dozen or so cells will be good enough for a demo, even though real organisms have millions of cells organized into complex structures. Whenever evolutionists are asked to show by EXPERIMENT that their theory is real science they always come out with the old worn out excuse of time. Immense periods of time are needed. In every science, except the philosophy of evolution, time is always the enemy of organization. Whether manmade or natural, complex systems break down into simpler ones. This is demonstrated to you in all areas of life.

    Again, faced with CLEAR and UNAMBIGUOUS evidence that does not require an experiment, you dodge to one side desperately trying to come up with an impossible requirement with which to invalidate evolution. And furthermore, the failure of such an experiment as you propose would not be any kind of falsifiable disproof -- as you have not stated what is irreducably complex. Neither do you understand by the premises of this experiment how life is to have evolved. BTW, you are WAY TOO HUNG UP on the 2nd law. Like Inigo Montoya says, "That word does not mean what you think it means."

    Living things are very adaptable and in that sense, "survival of the fittest" is certainly valid. However, the urge to survive by adapting to stress in no way proves the claim of evolution from the simple to the complex.

    No, I think it's the staggering mass of fossil remains that proves that claim. Why do you keep wanting to change around the rules whenever the evidence doesn't suit you? Are you really that afraid of what it says?

    You state that evolution is fact, yet say that not knowing still makes a valid theory! Facts are things we know. You name me ONE other real science that is NOT based on doing experiments and measurements in the lab other than the pseudo-science of evolution.

    1. Astronomy. Idiot!

    It is you that has no understanding of entropy.

    Oh HO HO HO! Who the fuck are you to tell me what I do and don't know? Entropy speaks specifically to the level of chaos in a system. The end result of entropy in a closed system is HEAT DEATH, the complete cessation of all movement in a system. Don't fucking point me at the Wiki. I took physics 101, and passed it with all aces, which is more, I guarantee, than you can say. Heat death occurs when all of the energy in a system which is organized (into things like stars) has been exhausted. Since the Earth is a system in concert with a STAR, the Earth system is not subject to Heat Death JUST FUCKING YET. When the SUN BURNS OUT then you will have a point. Until then, please slam your ignorant gob shut because you clearly do not understand the VERY FIRST THING about your topic.

    Evolution of simple life forms into complex ones has also never been observed,

    Except in the fossil record. Blind?

    This process has neither been observed happening today in nature, nor has anybody MADE it happen in a lab. Show me just ONE example.

    Shifting requirements . . . yawn. The only reason I'm still typing is that I've made it my personal crusade to mock you until you shut the fuck up. You are wrong. Accept it and gag on your acceptance of it.

    Neither evolution's non-mind stance, nor ID theory of a Mind behind life can be experimentally verified

    Evolution is again a factual process. Natural selection is the theory. Blueness of the sky, and all that. Not seeing the forest for the trees? Your intellectual cowardice is staggering. There's nothing I truly despise more than the willfully ignorant, and you are as willfully ignorant as a four-year-old child. Go change your fucking diaper.

    --
    One day I feel I'm ahead of the wheel / the next it's rolling over me / I can get back on / I can get back on
    1. Re:STILL wrong. by arminw · · Score: 1

      ......Astronomy.....

      Calling people bad names and getting angry, using abusive language just PROVES that you have no real answers. Astronomy is an experimental science. Spectra from stars and the laws of their motions are mathematically defined and PREDICTABLE. Evolution is backward looking, but all true science can also make mathematical projections based on experiments and repeatable measurements of observations. Helium was discovered on the Sun by light spectrum measurements before we found it on Earth.

      Entropy is not only relevant to thermal applications but also has to do with the statistics of order. EVERYTHING, whether manmade or natural is subject to decay and wearing out, WITHOUT exception. The only way to counteract this tendency is to apply energy and the INFORMATION of how and where to apply the correct amount of energy. Nothing EVER becomes more orderly without these two factors. Your messy and disorderly room will get more messed up unless you supply the energy and know how to clean it up periodically. You can twist and turn all you like, but there is no way to get around that FACT which is experienced every day of life by every human on this planet including you. You too are getting older every day and eventually are going to DIE and all the complex systems of your body will simplify back to the elements. Evolution preaches this contradiction against what everybody experiences and is the basis of the religion of atheism. NOTHING about evolutionary theory is mathematically quantifiable or predictable. Name a formula that states how a reptile becomes a bird!

      -----Except in the fossil record. Blind?-----

      The fossil record shows a record of living things in the past, but doesn't show how they "evolved" from one group to another. The "missing links" are STILL missing. Evolution cannot be shown to be occurring today and has NO mathematical basis, such as all the other real sciences. The fossil records show what was, but there us no way to tell from that how it came to be that way. You are willfully ignoring what is true by your BELIEF in a conjecture that is proven false every day in your life. You can mock me, but you will find it futile to mock the truth, for it will mock you in the end, and that will be very sad.

      --
      All theory is gray
    2. Re:STILL wrong. by SlippyToad · · Score: 1
      Calling people bad names and getting angry, using abusive language just PROVES that you have no real answers.

      Bb-b-b-b-boo frickety hoo! I answered correctly and you still CAN'T TAKE IT.

      Astronomy is an experimental science.

      I am rolling on the floor laughing. You are PATHETIC.

      EVERYTHING, whether manmade or natural is subject to decay and wearing out, WITHOUT exception.

      That is not precisely what's addressed by the 2nd law of THERMO dynamics, genius. Just the heat.

      Furthermore, you are not intellectually up to the task of convincing myself or anyone that the situation I have described above in any way deviates from 2nd law requirements. Show me the figures. Show me any kind of rigorous demonstration that you've thought this through from soup to nuts and have an explanation within the boundaries of observed evidence that demonstrates that things had to have fallen apart faster than evolution could put them together. Or again shut your gob.

      the fossil record shows a record of living things in the past, but doesn't show how they "evolved" from one group to another. The "missing links" are STILL missing.

      Demonstrate, then, how those missing links can be bridged by Intelligent Design. Your task awaits you. Put up or shut up. Or at least shut up.

      Honestly, no matter how many missing links are brought to your attention, you will gasp and flubber about attempting to somehow prove that reality isn't closing in on your fictitious construct.

      You are willfully ignoring what is true by your BELIEF in a conjecture that is proven false every day in your life

      Proven how? Evidence, please?

      You can mock me, but you will find it futile to mock the truth, for it will mock you in the end, and that will be very sad.

      John Malkovich on SNL: "You mock me! I will not be mocked!"

      I'd love to debate you in person.

      --
      One day I feel I'm ahead of the wheel / the next it's rolling over me / I can get back on / I can get back on
    3. Re:STILL wrong. by arminw · · Score: 1

      ....That is not precisely what's addressed by the 2nd law of THERMO dynamics, genius. Just the heat......

      The principle of entropy has far wider applicability than only thermodynamics. Look up the topic in the WIKI pages.

      A quote from the WIKI article: "Unlike most other laws of physics, the Second Law of Thermodynamics is statistical in nature, and its reliability arises from the huge number of particles present in macroscopic systems. It is not impossible, in principle, for all 10^23 atoms in a gas to spontaneously migrate to one half of container; it is only fantastically unlikely -- so unlikely that no macroscopic violation of the Second Law has ever been observed."

      Evolution of simple life forms into complex ones has also never been observed, and although not impossible, it is just as unlikely as the atoms all migrating to only one part of a container.

      -----Demonstrate, then, how those missing links can be bridged by Intelligent Design.-----

      I have never asserted that ID, creationism nor EVOLUTION can do this. ALL of them are unable to prove their dogmas by *any* repeatable experiments or measurements, as is done in other REAL science. Since we don't have a time machine, we can only deal with the present. Evolutions asserts that things happened in the past which we cannot duplicate today. From your personal attacks, I'd make the evolutionary prediction that if there were evolution, your descendants (if any) will nastier than a cornered rat.

      Real science with experiments and observations, demonstrating the mathematical preciseness and PREDICTABILITY of nature is only about 400 years old. Before then, "science" was limited to philosophical discussions of various beliefs. That is where evolution is still today, since there is not, neither can there be, solid, repeatable, mathematically defined experiments or observations to prove its assertions. I'm not calling my belief in ID science and your belief in evolution has no business masquerading as science either.

      --
      All theory is gray
  183. Re:feed me to ____(fill in blank with animal) by Bryan+K.+Feir · · Score: 1

    Heh.

    I'm reminded of an incident that happened up here in Toronto. A writer died, and as part of her will, she wanted a tree planted and her ashes used to fertilize it. The tree was to be planted on the grounds of a library that she had previously donated a lot of her book collection to, and which had already been named in her honour.

    The problem was that there are local by-laws regarding disposal of corpses, and this violated at least one of them. I believe someone attached to the library branch snuck out at midnight to make sure the author's wishes were kept, despite the bureaucrats.

  184. Re:beleive what you want... by compro01 · · Score: 1

    i have no idea on what the answer for any of the questions you posed is. i fully accept that i have no idea on the answer and i am confident that we will eventually figure it all out, somehow.

    --
    upon the advice of my lawyer, i have no sig at this time
  185. Re:beleive what you want... by Pooua · · Score: 1

    Size isn't the issue; complexity is the issue. The reason a whirlwind won't assemble a 747 out of a junkyard is that a 747 is too complex for natural forces to produce.

    The number of particles in the Universe might seem unimaginable, but it is not uncalculable. The number of of particles in the Universe is estimated between 10 raised to the 87th power (10^87).

    "If the universe were packed solid with neutrons, there would still be only 10^128 particles, a number larger than a googol but much smaller than a googolplex."

    http://www.stormloader.com/ajy/reallife.html

    Let's suppose there were 10^100 particles in the Universe, and each particle represented a tiny printing press, printing random characters at the rate of one character a year. If it does this for 20 billion years, then the particles would have printed 20 x 10^109 characters. If we increase the rate to the 10^20 characters per second, then we would have 10^100 * 10^20 * 6 x 10^17 characters, or 6 x 10^137 characters produced. Notice that this is more particles than are believed to exist in the Universe, and more time than the Universe is claimed to have existed (that is, around 14 billion years), all at a frequency greater than would produce x-rays. If the odds of something happening are 1 chance in 10^1000, then you should see there hasn't been enough time in the entire history of the Universe for that event to have happened. It is practically impossible. Indeed, an event with a 1 chance in 10^100 isn't likely ever to happen in the lifetime of the Universe.

    There actually is practical application of such a concept. Alan Turing's Halting Problem is based on this principle; namely, there are some problems that a computer cannot solve, because it won't have enough time in the Universe to solve them. Substitute biological evolution for the computer, and you can see why evolutionists hate mathematical analysis of evolutionary theory.

    --
    Taking stuff apart since 1969 (TM)
  186. Wrong by Doc+Ruby · · Score: 1

    "Prions are defective proteins."

    "Defective" means they don't do what the designer expected. In the context of proper science, there is no "designer", or the "designer" is nature, which does not "expect" anything. Or there is an "intelligent designer", for which there is, as yet, no real evidence.

    Self-replicating RNA, not just any nucleotides, constituting just one of the many possible products of random chemical process "mutations", might have taken a much longer time to occur often enough to become established as a permanent presence in the organic soup. Simpler self-replicating proteins might have occurred earlier and in great enough numbers to become established, despite the other processes feeding off them and breaking them down. Where does your oversimplified analysis account for that?

    And where does your obnoxious retorts, including stabs at "Darwinists", fit into the proper context of science? It really sounds to me like you've got your own version of "science", which you're latching onto and running with. Which makes sense, but not in the context of proper science.

    --

    --
    make install -not war